Array 1 247510-247735 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061362.1 Clostridioides sp. ES-W-0016-02 plasmid pESW1602, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 247510 29 100.0 37 ............................. CCATGCTCCACCTCCTACAATATATAAGTTTTGAGTT 247576 29 96.6 36 .................C........... TAGAAGAAGCCTTTCTAAATAAAATAGCTACAGTTA 247641 29 93.1 37 ................T........C... CTAACGATTTGTATTTATTTTATTGTTACTTATATTA 247707 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 97.4 37 ATTAAACCTTAACACTATGTGTATTTAAA # Left flank : TATTAAACATATTTCTGGTGTTTTATTTTTTACATACTCTAAGACTAATCCATTTTCTCTTACAGCATTAATGCACATCTCATATGTCTGTTTTTCTGCATTTATCAAAGACCATGGATGTTCCTTTACCCAATCTACATCTATTTTTCCCATTTAACTCTCCTTTTTCAATCTTATTTTTATAATACTATATTTCGATTTATTATAGTATTATTTATTTTCCTTTATAATTATTGTACATTTTATATTGACTATATAAAATATTGAAACTTGATTTATATAGTGATATAATTAGTTTATCCCAATCTAATTGATGCAGTTGGAAACTATAAAAGAAGAAGTACAAGAATCTGTTTTAAAAGGAAATTTTAACATTAAAGATTATACAAAGTTTTATGTAAATGAATTAAGATTTACTGAAGTTGTTTGTATTGACATAGAGGAAGAATTTCAAGATTTTATTAATGCTTGTACAAAACAATATATGCCAGTTACTTTTG # Right flank : ATAACGCCAATAAAAGTGGTTAAAAAAAGCTATCTAAATTAACAGATAGCTCTTTTTGAATTATTAAAACTTTTTAAAAATTTAAGATATCTTTTCCTATGAGTATTTATTCTTTTCTCTGGGTCAAATCCTCCATCTGTATTATAAATTCTATCAATAAAAGTCTCTTTAGTAATATTATCTTGGCATCCTACAGTAAATAACCATTCTCCATCTTTTTCTATTGCTATTACTTCACTTGCATTTCCCTGCTCTTTTAAATATTTAATATTAAATTCTTCTAAATATTTTTCCTTATCTATTACATACTTAATTGCATCTTTATCTTGTTTTAGAGCTTCTCTACATATCTCTTCTGTTTGGTTTTCTACAAATTGTATTGCCAATCCATCATGTCCTACTGCTTCCATACATATTTTTGGAGTCTGTTCTATTACAAATTCTAAAGATAAGTAGTACTCTCTTACAGCTTCTATGCATATCTCTTCTGTTTGTTCTTT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 248799-249457 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061362.1 Clostridioides sp. ES-W-0016-02 plasmid pESW1602, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 248799 29 89.7 27 ...G...T..........T.......... CGATAGACAAGTACAAGCATTAGAGAA Deletion [248855] 248855 29 89.7 37 ...............CT.........G.. CGCATAAGTAAGAGTAATCCACTTGCAATGAGATACA 248921 29 93.1 37 ..............T...A.......... CAGCATATTAAAACTATTCTGTAACTAAAACTAAGTA 248987 29 96.6 37 ...C......................... AGAAGCTAATCGCTTCGCATCTACATTTTTATTATGT 249053 29 93.1 35 .........G......T............ CTACATAACATTAAAAAATACAATTTTACGAAGTG 249117 29 93.1 36 ............T.T.............. CATCGTTACATAAAGTACATTAGCAATAGAAATCAG 249182 29 100.0 40 ............................. TAACGCTATATTTTTAAAAGAAACAGATTTTCTTACTAAA 249251 29 96.6 36 ....G........................ CCCTTGCAGACCTGTTATAAATGCATAAACGAGTTG 249316 29 96.6 32 ...G......................... CACTATATACTTCATTTAGCTTAGTATTCATC 249377 29 96.6 24 ................T............ TACTGTATAATTGGAATATTAAAA Deletion [249430] 249430 28 86.2 0 ................T.....-..A.T. | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 93.8 34 ATTAAACCTTAACACTATGTGTATTTAAA # Left flank : TCTATATACTCAAGTGCATTACCATCTTCATTTACTGCTTTAAGATATAGGTTATATATCTGTTCTTTGGTTAAATTAAGTTCATCCCACCTTACATCTTTAAGTAACAGTCCATCTTCTTCTATAGCCTCAATACACATCTCATACGTTTGCTTTTCTGCAAATTCTAAATCCCATGGATAATTTTTTATCCTATCTAAGTTCACTTTTTTCATTTAATTTTTCCCCTTTTAAAATTATATTTTATAATACTTTTATTCATGTTTAATATATTATTTTTAAATTATTTTTATAATAAGTATAACATTTTTATTGTTTATATAAAATATTGTAAGTTGATTTATATAGTGATATAATTAATTTATCCCGATTTGATTGGTATATATGTTGAAATATCTACATTATTATTTTTATCTGTTAATTGGGATAAAGGACTTAGCTTAGTTGAAATGTAGTAATTTTAAGTATTTATTGATTTTACAAATAGATTCTTTATAGCT # Right flank : ATAAAAGAAGCCTCTATAGCAATTATGGAAGCTTCTTTAACTTCAAACCCCATATTGTTTATTTTTATAAATATTTTTATCAATAGCAACCACCAAAAATTGTTTATATAAAATATTGTAAGTCAATTTATATAGTGATATAATTAAATTATCCCAAGCTAATTAATATAGCATTTGAAATATCTACATTCTTATTTTTAACTATTAGTTGGGATAAAAAGCTTATAGGAATTGAAACTACTGAATTGTAAGCATTTCTTAATTTTAGAAATGGCTTGTTTACAGTGATTAAACCTTAACACTATGTGTATTTAAATGTAAAACGGTTTCCTAAATTGTGGGGGTGAACTTCTATTAAACCTTAACACTATGTGTATTTAAATCAAGATAATCGAAAGAAGAATTTGCATCTATTGATATTAAACCTTAACACTATGTGTATTTAAATTGTTATTATTTCCTCCGCTTTCTGTACTATTTAAATATTAAACCTTAACACT # Questionable array : NO Score: 3.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:-0.05, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 3 249744-250233 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061362.1 Clostridioides sp. ES-W-0016-02 plasmid pESW1602, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 249744 29 100.0 37 ............................. TGTAAAACGGTTTCCTAAATTGTGGGGGTGAACTTCT 249810 29 100.0 36 ............................. TCAAGATAATCGAAAGAAGAATTTGCATCTATTGAT 249875 29 100.0 37 ............................. TTGTTATTATTTCCTCCGCTTTCTGTACTATTTAAAT 249941 29 100.0 37 ............................. TAAGTATTTTTGAAGGTGTGAAAGATTGTAGGTTTAA 250007 29 86.2 37 ...G...T........T.A.......... CATGTGGGATGACACCAACGATCACATTGTGCAATAA 250073 29 89.7 36 ..............T.G.A.......... TTCAATTATACAAACGTAACCTGCATAACTGTCTGC 250138 29 100.0 38 ............................. CTATTCTACTGTTATGTCCAGCTCGTACCCATATCCAG 250205 29 89.7 0 .......................AAA... | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 95.7 37 ATTAAACCTTAACACTATGTGTATTTAAA # Left flank : TACTAAAATTAGACCTTAACACTATGTGTATTTAAACCCTTGCAGACCTGTTATAAATGCATAAACGAGTTGATTGAACCTTAACACTATGTGTATTTAAACACTATATACTTCATTTAGCTTAGTATTCATCATTAAACCTTAACACTTTGTGTATTTAAATACTGTATAATTGGAATATTAAAAATTAAACCTTAACACTTTGTGTTTAATATAAAAGAAGCCTCTATAGCAATTATGGAAGCTTCTTTAACTTCAAACCCCATATTGTTTATTTTTATAAATATTTTTATCAATAGCAACCACCAAAAATTGTTTATATAAAATATTGTAAGTCAATTTATATAGTGATATAATTAAATTATCCCAAGCTAATTAATATAGCATTTGAAATATCTACATTCTTATTTTTAACTATTAGTTGGGATAAAAAGCTTATAGGAATTGAAACTACTGAATTGTAAGCATTTCTTAATTTTAGAAATGGCTTGTTTACAGTG # Right flank : AGAAGCTTCTATAATCTCTATAGAAGCTTCTTTTTTTATCTTTCTTATTGTACTATATGGTCATTAGTGTCGTCCCACATACTGCCTCTAATCTCAAATTCAAGATTCTTTTCATCGCACAGCTTCTCTTTGCTCTTAGCAGTTCCAACCCCTGTAAGCTCTGGAGTCCAAACATCTAAGCTATAAAATCCGTCTTTTGTATTAGTCCCAGTGTAAATTTTAATAGGTTCTTCCACTCCATTTTTAGATTTTTTCTGCATTGTATATCTTAAAACTGTCTTATCTGCATTTGTACTTACAACTGTTACATCAAAAACTTTTTGGCTTCCAAAAATTCCTGTTGCAGATAAGGTCTTCCCATCTGCTGTTTTTACATATATATCTTTATAAATGTTTGGAGCCATATTCTGGTTTGTTACACTTAATCCTTTACTTGTACTTGTATTTCTTGTATCCCAAGCTTTTGGCTGTCTCGTTAAGGCATTCGTATTATATTCCAC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 255204-255593 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061362.1 Clostridioides sp. ES-W-0016-02 plasmid pESW1602, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 255204 30 100.0 39 .............................. CCCAATATAATGGTGACCCAGAAGAATTCCAACATTATT 255273 30 100.0 36 .............................. CTGTAACGCCTTTAGTTACTAATGTATCTATAATAT 255339 30 100.0 34 .............................. TCATTTGTGGCTTTATAGCCTTATTTAAATCTTC 255403 30 96.7 17 ................A............. TTAATTACTAACGTATC Deletion [255450] 255450 30 73.3 33 CCCTGCT.........A............. CAGAAAAGAGTATAAAAGACAACTATATGTAGA 255513 30 96.7 21 ................A............. TACGTACATATATAAATTAAA Deletion [255564] 255564 30 86.7 0 ................A......A....GA | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 93.3 30 ATTAAACCTTAACACTTTGTGTATTTAAAC # Left flank : TTTTATATTACAGGCTTTAATCTCCATCCTACTTACGTTGAGGATGGAGTATTTCGCCTATTATTGATAAATTATATATCTTCTTCTTATTTAGATTAAGTTCATCCCACCTTACATCTTTAAGCAATCCCCCTTGTCGCTTTACTGCTTCTATACACATCTTATAACTTTGCTTTTGCATGTGTGCCAATCCCCAGGGGTATTTTTTTATCCACTCTAAATCTGTTTTACGCATTTACCTATCACCTTTTTATTTTCATAACATTATATATTATACTTTAATTTTATTTATAATAATCATACCATTTTTATTGTTTATATAAAATATTATAAGTTAATTTACTTAGTGATATAATATAAATTATCCCAAGCTAATTTATGTATATATTGAAATATCTATATTTTTATTTTTAACTATTAGTTGGGATAAAAAGCTCATAGGAATTGAAACTACTGAATTATAAGATTTTCTTAATTTTAGAAATGGCTTGTTTACAGCT # Right flank : AAGAAGCTATCTATTAATTTAGATAGCTTCTTCTTAATATTATTCAAACTCTTTTAAGAAATCAACATAAGTTTGTCTATGAACATTAACACCTTTCTCTAAATCAAATCCACCATCTTCATTATAGATTCTATCAATAAAAGTCTCTTTGGTAATTTTATATTGGCAACCTATTGTAAATAACCACTTATTATATCTTTTTACTGCGAATACTTCTCTGGCCTTTCCTTGCTTTTCTAAATATTTAACACCAAATTCATCTAAATACTTTTCTTTAGCATTTACATACTTAATTGCACATATATTCTGCTTTAAAGCTTCTCTGCATATTTCATCAATCTGTTTCTTTGAGAATCCATCCCATTTTATATACTCTAAAGCTAATCCATTTTGCTTGACTGCCTCTAAACATATCTTTGGTGTTTGTTTGTTTACATATTGTAGACTACTTCCATTTTGCTTGACTGCTTCTATACAAATTTCTTCGGTTTGATTCTTTA # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.35, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTTTGTGTATTTAAAC # Alternate repeat : ATTAAACCTTAACACTATGTGTATTTAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 5 256727-257241 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061362.1 Clostridioides sp. ES-W-0016-02 plasmid pESW1602, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 256727 30 100.0 35 .............................. ATAACAAAAATAAATAGGAATAACAAAATTCGATA 256792 30 100.0 35 .............................. TTATTATCAAACCATATATCTCTATAGATACCCAT 256857 30 100.0 28 .............................. TATATAACAATCTGATTTATCTACAGTG 256915 30 100.0 36 .............................. ATAAATTCAAAGGGGGATTGAAATGAAAATAGTAAG 256981 30 90.0 31 .......T......C...G........... GCTATATACTTCATTTAGCTTAGTATTCATC 257042 30 93.3 28 ..............C...G........... GATTATAAATAATCCGAGGATGGTGAAA 257100 30 90.0 29 ..............C..CG........... ATCGCAACTACACAAAGATATATAAGAGT 257159 30 90.0 23 ..............C.T.G........... ATAGAGAGCATTAATTTGCAAAA 257212 30 80.0 0 .......T......C...G....A.A...A | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 93.7 31 ATTAAACCTTAACATTATATGTATTTAAAC # Left flank : AATTCATCAAACTTCACATATTTAAGAGTCCCACCATCTTTGAATACCGCAATAAGATATAGATTATATAACTGTTCTTTAGTTAAATTAAGTTCATCAAATCTTACATCTTTAAGTAAATATCCATATTGTCCTACTGCTTCTATACACATTTCATAAGTTTGCGTTTTTGCAAATTTTAAATCCCATGGAAATTTTCTTATCCACTCTAACCCTATTTTCTCCATTTATCTATCCATCCTTATTGTTATTTTTTATAATACTTTTTTATATATAATATACTATTTTTCAATTTTATTTATCATAATTATATCATTTTTATTGACTATATAAAATATTGTAAGTTAATTTATATAGTGATATAATATAAATTATCCCAAGATTATTAATATAATACCTACTTTCTATTTTTAACTATTGGTTGGGATAAAAAGATTAAATTAATTGAAACTACTGTATTATAAGATTTTCTTAATTTTAGAAATGGCTTGTTTACAGTG # Right flank : AAGAGCTATCTATTAATTTAGATAGCTCTTCTTGTATTATTCAAACTCTTTCAAGAAATCAACATAAGTTTGTCTATGAACATTAATACCTTTCTCTAAATCAAATCCACCATCTTCATTATAGATTCTATCAATAAAAGTCTCTTTGGTAATTTTATATTGGCAACCTACTGTAAATAACCATGTTCCTTCTTCCTTGATGGCTATTACTTCTCTCGCTTCACCTTGTCCTTCTAAATATTTAATATCAAACTCTTCTAAGTATTTTTCCTTATCTTTTATATATCTAATTAAATTCCTATCTTGCTTTAGAGCTTCTCTACAAATCTTATCTATTTGTACTTCTGATAGCATATGCCACTCTACATATTGAAGCGCTAATTCATTCTTTTTTAATGCTTTTATACATATCTCTGGTGTCTGTTTTTTTACATATTGAAGAGCTGAATAATCTTGTTTCACTGCTAATATACACAATTCTTCTGTTTGTTCTTTTACAT # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACATTATATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 6 263190-263811 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061362.1 Clostridioides sp. ES-W-0016-02 plasmid pESW1602, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 263190 30 96.7 35 .............................A CATCTTCCTTTGTAAAATCATACTCACTAAGAATA 263255 30 100.0 36 .............................. AATATCTGCATATGTAACAAGTTATGCAAGAATTTT 263321 30 100.0 36 .............................. TCTTTTTCTAAGAACATTGCTAAAGGTAGATTTTTA 263387 30 100.0 37 .............................. AATACTTTGTTTAATTTACTATAAATATCATCTTCAA 263454 30 100.0 35 .............................. TCAAAATCTACAATTATTCCATATTTTTCTTTTAA 263519 30 100.0 36 .............................. CGAGTTCAAACAACAAGGTTTTATTGATATTAGCAT 263585 30 100.0 36 .............................. CCAATAGTTTATTCTATAGTAAAAGAAATACTTAAT 263651 30 100.0 36 .............................. AAAGAGGTTATACCTATTTTTATTTTTTCTGGGTTT 263717 30 100.0 36 .............................. AAACATTACTAATGAAAGGGTATTAGAATTTACATA 263783 29 83.3 0 ................T......-AA...G | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 98.0 36 ATTAAACCTTAACACTATGTGTATTTAAAC # Left flank : TATTTTTTTCATTTTATTTCCCTCCATATCCCCTCTATTTATAGTAAACATTATATAATACATACTATAAAAAATATGTAAAATATTGTCACTTAATTATAAATAAGGGAGTCTATCTATTTATATAAGTTTTTTTATAAAAAAACTGTTCTATTTTCTTATTTTAATAGTAATTTTTTTACCAATACATTATATACAAAACAATTTATCTTATAACATCTCTTTCGTGAAAGTTGCCTTTTTATATAATATTAACTTTAATTATATAATATGTATTTATTTGGAAATTGTCAATATTTTTAATGAATTTTATTGATTATATAAAATATTGCAAGTTAATTTATATGGTGATATAATTAAATTATCCCAATCTAATTAAGGTATTTATTGAAATATCTATATTCTTATTTTTAACTGTTAGTTGGGATAAAAAGCTTAGATTAATTGAAGCTACTGTACTATAAGCATTTCTAAAATTAAGAAATGGCTTATTTACAGCT # Right flank : GAAGTTACCTATAAATTAGATAACTTCTTTTTATTTATATTATTTATTATAAATGTCTACATAAACTCCCATGCTTCCATTTCTAATTTCGACTTTCTTGCCATCCAACTGTAAAGTTTGGTCTTCGAATTTTCCTTTTACAATATTAAAAAGTTTTTCTCCTTTATTTGGCAGAAGCAACTTAAAGCATTCTTTTACAGAGCTATCAAATTCTTTGGAATTGGCAAATAAACCAAATCCAACTACATCGTTTTCTGCATTTACAATTCCCATTTCTACGTCCCAATCACCTTTGTCAGTTTTTTGCTTATATACATATGTTGTTTTGCCATCTTTCATCCAACCTAAGTCTTCCAGTTTATTTCTAAACACCTCATTGCTAACACTCAAATCCACATCATTCTTATCTTCTTCTTTTTTATCCTGGTCCTTTACATTTATAGCATTAATTTTAATTCCATTATTATCTTCTTTAAATCCTAAATAATTAACCAATATTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 7 268732-268515 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061362.1 Clostridioides sp. ES-W-0016-02 plasmid pESW1602, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 268731 29 93.1 37 ..A.....T.................... TATTGTAATTTCTCCTTAAATTTTTTATGAATCTTTG 268665 29 100.0 23 ............................. CTACTAACGTATTAGTGTAGTTG Deletion [268614] 268613 29 96.6 41 ............A................ TTAATTATTGCATCAAAAAAATTGAATAAAAAAAAGACTAA 268543 29 86.2 0 ............A....C.......A..A | ========== ====== ====== ====== ============================= ========================================= ================== 4 29 94.0 34 TTTAAATACACATAGTGTTAAGGTTTAAT # Left flank : ACTGAAGTAGCGTGTCCCCTTTTGCCTTTTTTATGGAGATCTGATTGATATTGTATATGATACAAAAAAATAAGAGGGTGGTGATTATTATTAAAAGTTTAAGATGTATATTTAGGCACCTGTTTTCAAGAGTTAAAGATTGTGAGCTGATTACAACAAGAAGTCAGCAGTATACTTGTAAGATTTGGATGTGTAAACATTGTGGACAAATTGTAGCTGGCTCAACACCTGTATATCATCCTAAAATGGAGAAAAACGAATACTATATAAAGTGTGATCAATTAGCATGTGCTAAGAATGATGAAGGATATTGTAATTCTAAAGATAAAGAAATTGAGTTTAAATCGGTTTGTTTAGATGATGGAAAGCAGTTCTTAAAATGTGAAAATTTTGATTGGGAATAAAAAGAGAATAATGAAACCATATATTATGATGATAAGAAGTTGATTTTTAGGGATGTCTTTTAATTTAGATATCCCTATTTATATAAAAAACTATAC # Right flank : TAATTCATTTCTTAATTTAAGAAATGTTCACAAGATAGTAGTATTACCTAATCTATAGTTAAAAATAGAAAGTAGGTATTGCATTAATAATCTTGAGGTAATTTAATTATAGCACTAAGCTAATTTATTTACAATATTTTATATAGTCAATAAAAATGTTATAATAATTATAAAAAATAACAAATAATAATATACTTATTACAAAACATAGTGTTATAAATATAAAAACTAAAAAGGAGATAGATAAAGGAATGTTATGTGGAGGAAGTATATAAATTTGATATTAGAAATAGATATTCAATATTATAGGAGGAAAGAATTATTATGAGAGCATTATTAAATATGTATGACAGTTGTTCAGAAAATGTTGAGGTTAAGGTAGGCGATTATGTAATAGCAAATATAAATGACTTTGGATTAGAAAAAGGTAAAAAGTATAAAATTTTAGGTATCGATTCTATAGATTTAATAACAGTAGAAGTTAATGGGTGTGCACATGA # Questionable array : NO Score: 3.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:-0.24, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAAATACACATAGTGTTAAGGTTTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 8 273664-274160 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061362.1 Clostridioides sp. ES-W-0016-02 plasmid pESW1602, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 273664 30 100.0 38 .............................. CTTCTTTTATTAGCATGGTGAGTTAGGCAAATTTTAAA 273732 30 100.0 36 .............................. CTATCATTGTGGTGGTTATCCAGCTCATCTACATAA 273798 30 100.0 36 .............................. AATCTTTCTACCATAGATAAATACCACCTTTAATAT 273864 30 100.0 37 .............................. GTTGCATTATTATTATATACTATTGATATATTTAAAG 273931 30 100.0 37 .............................. CCTATTTTTTTTCTTTCTATTACATAATAAGAAGCTT 273998 30 96.7 37 .................C............ TATAATTTAGGTCTTATATTTTCTTTTGGTCTATCAA 274065 30 100.0 36 .............................. AATGTATCTAATTCATTTATTATAATATTATCCATT 274131 30 90.0 0 .......................A....GA | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 98.3 37 ATTAAACCTTAACACTATGTGTATTTAAAC # Left flank : CATAACATATTCCAGAGCATATCCAAATTCTTTTACTGCTGTAAGATATAAATTATAAGTTTGTTCTTTGGTTAAATTAAGTTCATCAAATCTTACATCTCTAAGTAGCATCCCCTCTTTTTTTACTGCCTTTATACACATTTCATAAGTTTGTGTTTTTGCATTTTTCAAATCCCATGGATGTTTTTTTATCCAATCTACATCTATTTTTTTCATTTGACTCTCCCTTTTTAAATTTTATTTTTATAACACTTTTATTTATATTTATTATATTATTTTTATTTTTTTTTATAATAAGTATATCATTTTTATTGTTTATATAAAATATTGTAAGTTAATTTATATAGTGATATAATATAAATTATCCCAAGCTATTTTATGTATATATTGAAATATCTATATTTTTATTTTTAACTATTATTTGGGATAAAAAGCTTAAATTAATTGAAACTACTATATTATAAGATTTTCTTAATTTTAGAAATGGCTTGTTTACAGCT # Right flank : AAGAAGCTATCTAAATTAATAGATAGCTTCTTTACTATTCAAACTCTTTTAGGAAATTAAGATATATTTGTCTATGGACATTAATATCTTTCTCTGGGTCAAACCCTCCACCTTCATTATAGATTCTATAAATAAAAATTTCTTTGCTAATATTATCTTGACAACCTACTATAAATAGCCATCTCCCATCTTCTTTTATTGCTATTACTTCTCTTACTTTACCCTGCTTTTTTAAATATTTAATATTAAATTCTTCTAAATATTTTTCCTTATCTATTACATACTTAATTGCATGTTTATCTTGTTTTAGAGCTTCTCTACATATCTCTTCTGTTTGTTTTTCTACAAATTGAAGTGCTAATCCATTTTCTTTTACTGCTTCTCTACATATTTCATCTGTTTGATTATTTACATACTCCAAAGCTAACCCGTTCTCTCTTACTGCTTCCATGCATATTTCATCTGTTTGATTGTTTACATACTTTAAAACATATCCTCTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 9 282896-282731 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061362.1 Clostridioides sp. ES-W-0016-02 plasmid pESW1602, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================ ================== 282895 28 92.9 37 ..T...........A............. TTATATAAAAGTTCTATATTTTTGACAAGTGGAGTGG 282830 28 100.0 44 ............................ TTTAATTATTGCATCAAAAAAACTAAATAGCAAAAAAAGACTAA 282758 28 89.3 0 ..T..............C.......A.. | ========== ====== ====== ====== ============================ ============================================ ================== 3 28 94.1 41 TTCAAATACACAAAGTGTTAAGGTTTAA # Left flank : GGTGCTATCTTACTTAAGCTAAATTATTCATCTATTTATCTTTATAATGTATGTTATTATAATTGTCTTTCTAATTTAAAGTATTCAGATTCAAATTATCATATATTAGGAATCAGTATATCTGCAAAAAAATAAGAAAGCCACCCTGGGCGGAGTGACCTTCTTTACCACCCAAACACCTAAGAGTGGTTTCAAAAAATAAATTGATTTATTAATTCTATTATATCACAAATTTAATTTAAGTACACCTGTAGTTTGATAAAAAATTTAAATTAATATATCTCTTTTTTCTATATTATATATATTAAAACAGTAAAAAACTACCCTTGCAAGGGTAGTTTTTCTGCACTCAAAGTTGGAGCTAAGAGTGGTTGGGAACTTTATTTTAAAATCAAATTCCATAGATTTAAATAATTACTAATTGTTTAAATTACGAACTCTACTCTTGTTTGAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATATAAAAA # Right flank : ATAATTCATTCCTTAAATTAAGAAATGTTCACAAGATAGTAGTTTTAACTAATATAAGCTTTTTTATCCTAATCTATAGTTAAAAATAGAAAGTAGGTATTATATTAATAATCTTGGGATAATTTGATTATATCACTAAGTAAGTACACTTACAATATTTTATATAATCAATAAAAATAATATAATTATTATAAATAAAATTGAAAAATAATATAACAAATAAGATATATAGTATTATAAAAATAAATATAAGGATGGATATGTAAATGAGAGAAGTAAGTTTAAAAGAGATAAAAAGATTACCATGGGAATTTGAATATGCAAAAAACCAAACTTATGAAATGTGTGTAGAGGCAATAAAACGACAAGGGTTGTTACTTAAATATGCAAAATTAAATGAACTAAATTTAACTAAGGAACAGATATATAATTTATATCTTATTGCAGTTAAGCAAAATGGAGAAGCACTTAAGTATATAGAGGAACAAACCGAAGAATTA # Questionable array : NO Score: 3.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAAATACACAAAGTGTTAAGGTTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 1778747-1780113 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061361.1 Clostridioides sp. ES-W-0016-02 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1778747 30 100.0 35 .............................. AGAACACAAGCATAATATAAAAAACCCTTTTATTA 1778812 30 100.0 36 .............................. TTTAGAAAAAGAACCTAACAGATTTCAAATGTTAAA 1778878 30 100.0 37 .............................. TCTAAATCATTTAAATTGTATTTTAAATCTTGATTAG 1778945 30 100.0 36 .............................. GCTGATGAACTAGGGAAAAGTGTTGGAGATAATTTA 1779011 30 100.0 37 .............................. TTCAATGAAAATATTTCGTTTTCTTCCTCTGCTGTAG 1779078 30 100.0 37 .............................. TCAAGTCCCCAAGTTGCTGTATCTATAAAAAACTGAT 1779145 30 100.0 36 .............................. CTAAATATTTTTTCTTACAATAATTAGTTTTACCCT 1779211 30 100.0 36 .............................. TTAAAACTAGCTTTACACTCTGTAAATATGTAACCT 1779277 30 100.0 37 .............................. TTTCAAAATCATCATGTTTAAAATGTTCTTCAATTAT 1779344 30 100.0 36 .............................. GCAACAATAAAGCAGTATGTTGCTAGATTTAGAGAC 1779410 30 100.0 37 .............................. GAGCAAACAGGTGCGGTTTATGGTACTATACCTATGT 1779477 30 100.0 38 .............................. CTAACTCACTATCTTCATCTTCCCATAAATGTAACCAG 1779545 30 100.0 36 .............................. TAATATCTGCTTTAGTATGTTATTTTGTAACAATGG 1779611 30 100.0 35 .............................. TAGCCTAAGAAAGAGAGTTCTTCTATTATAATATC 1779676 30 100.0 36 .............................. AGATGTAAAGTATGGAGAAAAAGAAGATATTTTAGA 1779742 30 100.0 35 .............................. TAATTCAAGTGACAAACTAAAGGTCCATTATATCC 1779807 30 100.0 37 .............................. ATTGAAAGAGAATACTCAAATTCTTAAAGCACTAGAA 1779874 30 100.0 43 .............................. TTTAACAAGAATTACTTGCTTATTTAGTAGATAGGAAAGGAGC 1779947 30 96.7 35 ..................G........... TCAGTATACCAAGTTTTCTTAACTCCTTCTCGGTT 1780012 30 96.7 38 .C............................ CTTGAGGAATATAACATAGTAGAAGATGCAGATAATGG 1780080 30 93.3 0 ........................A.G... | A,AAC [1780087,1780104] ========== ====== ====== ====== ============================== =========================================== ================== 21 30 99.4 37 GTTAAACAATAACATGAGATGTATTTAAAT # Left flank : TTGTATTAAATAATATATTTTAGTTTAGTTTTGAGGGGGATTAATACAATGTGTGAGAATTTACTTGATAATATGTATATTGAAAAGAGAAAAGAAGAATATAGAATTAAACTTTTGAAAATAAGAGAAACAGATATAGATATATATAATAAGATAGAAAGTATAGTATATAAACTTTCTGAGAAAAAATTAGAGAAAAATAAGTAAATAATATGGATAAAGCACTTAGTAAGTACATAAAAGTGCTTTATCTTCCAAAATATGCTATAATTGTAGTGTTAAATATAGGGTGATTACGCATCCTAAATGTGAGCTTATCCCAAGTAATTGGGATAGGCACTCGCAAAGATAGTTGTAAAATGTAGCAATTATCACCGTCCTAGCGAATCGCTAGGTAAAAACATCCGAAATTTAAAGACACTTGGGATAAATTTGATTAGTGCTAGTATTTGCAATGGTTTTAGGAAATTATGCTGTATAAGAATGTGTATTTTACAGTG # Right flank : TATTTATACAAAAACACTTGCTTATGGTAGGTGTTTTTTATTGAAAGGATGTAATTATAATGTAAAAAGTAATATATAGGTAAAATATGTAAAAATTATATGATATAATAATTGTAGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATGTATTAAAAAATTATCCTCCCAACGATAAGAAGGGAGGTGAATATACATGGATAATTTTTTATTTAATGTGTTAGCTAGTGTAACAGCTAGTTACATAGTTTATTTGATTAGCAAGTTAATCAAAAAAGTAAAAAGCCACTCTACCGCAAAGAGTGACTTAAAGATTGATATAAATTTTAAATATCATCGTAAAAAATAACTTTCAGTTATAGAACTTCACTCTACCGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTAGCAAAAATATTGCCTATAATATTTTTTATACACAATGATGATAAATCTAACTGGATGAATAAATTTAATTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 2329878-2327011 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061361.1 Clostridioides sp. ES-W-0016-02 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2329877 30 100.0 36 .............................. ATGAAAAGAGTGTTTAGAAATAAGTGAAACACTCTT 2329811 30 100.0 36 .............................. TCTTTAGATTTAGTCATATACTTAAAAACTTCATAA 2329745 30 100.0 36 .............................. ACTAAAATATTAAATTCATCCCATATCTTTTCATTA 2329679 30 100.0 36 .............................. GCTTTACAAAAGATTTTTATAATTGTAGGTAGACCT 2329613 30 100.0 35 .............................. GTTTTTTGAGTATATTCCTTTATTCTAGACATATG 2329548 30 100.0 35 .............................. AAAACAACTAACCCAGATATAGATGTTGATTTTGT 2329483 30 100.0 36 .............................. ACGACAATATCATTTTCACTTGTACCTTTATAAATG 2329417 30 100.0 36 .............................. ATAATTTGCTTGTGTATAGGTTTTAAGTTCCTTATA 2329351 30 100.0 36 .............................. CTTGCTACATCAAATATTCCTATAGCTACATTTTTA 2329285 30 100.0 36 .............................. TACTTTTAGATATAAGGATAAATATGCTCAACTTTA 2329219 30 100.0 36 .............................. TTTGCATGATTCGCATGAAAAAAGACTTGCATACGC 2329153 30 100.0 37 .............................. ATACTTTGACTGCTTGGGGGTGGTAATTTTGGCTAAG 2329086 30 100.0 37 .............................. TGAAGATAGACAAAGTTATGCTATGACTGTTGTAAAC 2329019 30 100.0 36 .............................. ACTATTGCTTTTGTTAAATCATCAACTTTTTTTACA 2328953 30 100.0 35 .............................. CTTTTTCGTATAATTTTTCTGATAGAGTCTTGTAA 2328888 30 100.0 36 .............................. AAATAATACCCCCAATCACTAACGCACCCCTCAAGG 2328822 30 96.7 36 ............A................. AAATAAAATTTTCTCTAGCCTTTGATATACCATATA 2328756 30 100.0 35 .............................. GACGCTAAGAAACGCTTATTGACTAGTCTTGAAAG 2328691 30 100.0 35 .............................. ACATATATAAGTTAATTATACGGGATTTACAATAG 2328626 30 100.0 36 .............................. CTACTCTAAGCCCTTCATGTTGGTACTAGACAACAT 2328560 30 100.0 36 .............................. ATATCTTCTAAATTAGATATACCCTCAAAAAATTCA 2328494 30 100.0 36 .............................. AAAGTATCTACATAAAGAAATTTCCCTTTTTTCTGT 2328428 30 100.0 36 .............................. AATTCTATATTAATAATAACAGTAACTGGAGGCATA 2328362 30 100.0 36 .............................. ACATAAAAACATCCCCTTTTTATTTATTTTTTTTTA 2328296 30 100.0 36 .............................. TTAACTCCATGAGTCCATAACCAAAAACTCCTAATT 2328230 30 100.0 36 .............................. ACTTAAGATTAAAATGGTACTCAACTTTCTTTTTAA 2328164 30 100.0 38 .............................. CAACTGGAAAGCAACAACTACATTAACTGTTTTGTCAA 2328096 30 100.0 36 .............................. ATCCAAGTGTTTAGTCGGCTCTTGCAGTGTTCTCTG 2328030 30 100.0 34 .............................. AAGACAATTCTGAATAATCTAAAAATATTTCTAG 2327966 30 100.0 36 .............................. GAGATTGGCAAAAGTAAATTAACTTGCATTTGCCTT 2327900 30 100.0 36 .............................. ATCAACATATTCATTACTTTTTAGCCCTGCGCTGAG 2327834 30 100.0 36 .............................. ATAGAAAGGGCTTCTGAAAGTGATATAATTTGTTTT 2327768 30 100.0 36 .............................. AGTTGTAAGAGCCAGTTAAAAAACTTTTTTTAACTT 2327702 30 100.0 38 .............................. GAGTGATTACTTGCAAGAAACAAACGACCATCAAAATA 2327634 30 100.0 36 .............................. AAGTAAGTCTATAATATTCTAGTTTCATTCACAAAC 2327568 30 100.0 36 .............................. CTTATAACTTCTTGTAATTCTTTTTCAAAAACAACT 2327502 30 100.0 34 .............................. ATGTTAAAAAGAGTTGGTTCAACTAAAGTTTCTT 2327438 30 96.7 36 ..................G........... ATCTAAAACAGGTGGAACATTTGTAATTCCATCTAC 2327372 30 100.0 37 .............................. TTTTTTACCTTTTGCAAATGATTGCTTTGTTAGAAAA 2327305 30 100.0 36 .............................. TAGGGATTATGGTTTGAGATGTTTTACCACAACCAG 2327239 30 100.0 36 .............................. TTCATTTGTAAGTAGTGTTAAACCTTGTAACATGAC 2327173 30 100.0 37 .............................. ACTAAAAAATTAGTTCCTGCTACACCTAAAAGTGATA 2327106 30 100.0 36 .............................. TTTTTAGGGCAGCACCATAGCCCTCCTTATATTTTG 2327040 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 44 30 99.8 36 GTTAAACAGTAACATGAGATGTATTTAAAT # Left flank : ACACTCAAGTAGAAGATGAATCTGGAAATATAGTTGTAGGAAGTGATGTTTGGGAAGATTATGTTTCTCTATTAAAAAATAATGATATTGACTATTCTGAAAAAAGAGTAAAGATGTCTGACATTATGGAAAAATTAGATTATTTTACATATAAACTTCGTAAATTTGATAATTCATTTAATGATTATATAGGAGATATTTTTTATATTGATGATGGTGAACAGTATTTTACAGATGGTAAATTTGATAGAAGCAAATTTAATGAAAATGTAGAACATGAGTATATATAGTAAGGTTAGATTAGAAATAGGATATATAGTATAGTGTAATTAAAATTTATCCCAAGCTAGTCAATGAAGAATAGTTTCTAAGTATTGAAATTTAAATATTTTATAACTTTTATAGATTTTTTATGATTAGCTGGGATAAAAAATCTATATATCAGTCTTTTCAATGTGTTTAAAAGCAATATCCTTTTAAGAGATATTGCTTTTACAGTG # Right flank : TATTATACAATATTAAATTAAATAAAAATAATTTTATAGTAAATTATATTGTAAAATTATAAATTTTAATATTCTGAATAAGACAATATATGATATACTTATATATAAATAATCAAATAAATAGGTGATATTATGAAGCTTACAGGAACTTTAATAAATTACTATTTTCATTGTAAAAGACAATGTTGGCTACTTGGCAATAGAATAAACCTAGAAGAAAATAGTGAAGATGTAAAAATAGGTAGAATTCTTCATGAGCTAAAAGAAAAAAATTCAAAACATAAAGAAATTGCAATTGAAAATATAAAGATAGATAAATTAACAAAAGAATATTTAGTAGAGATTAAAAAGTCTGATGCTGATGTAGAAGCTGTCAAATGGCAAGTTCTTTTATACTTAAAAATATTAAAAGAAAAAGGAATTGTTAGAAAAGGAAAAATTGAATTTATAGAAAAAAACAAAACCGACAAAAAAATAGTTTTTGTAGATTTGAGAGAAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [95.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //