Array 1 168-1397 **** Predicted by CRISPRDetect 2.4 *** >NZ_RADW01000110.1 Pseudomonas aeruginosa strain HUM-318-D2 PA2_F5_NODE_33_length_48773_cov_13.8875_ID_65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 168 28 100.0 32 ............................ AGTTGGGCAACGTTGCTTGTCGAAACGACGTA 228 28 100.0 32 ............................ TTGTAGAGAGTCGACGCGCCCTTCAGCATGTA 288 28 100.0 32 ............................ AGCATGACCAGCGCCAAGCGCTTACGGTGATA 348 28 100.0 32 ............................ AAGTGCCGCCGCGATCAGCGCGGGGTCGCCAT 408 28 100.0 32 ............................ TTGCTCAAGGCTTGGAACACTGGCCACCCCGG 468 28 100.0 32 ............................ CTGAAAATGGCGCAGGAAACCGAGGTGGCCAT 528 28 100.0 32 ............................ TGGCCCAGGTAGGTGGCCCAGTCCTGACCCTC 588 28 100.0 32 ............................ TTGTCGGCCACGCGCAGGTTCTCCACGACGTT 648 28 100.0 32 ............................ TGGAAGTCCCGCACCGAGATCGAGGCGTTCAT 708 28 100.0 32 ............................ TGACTCTGCACGGTGTCGCAGATTGACACCTC 768 28 100.0 33 ............................ AGGAACACGCTCGAAGTGTCCAGCACCCTTGGC 829 28 100.0 32 ............................ ATCAATCGCTTGATCCCGTCTCGCATGAATGT 889 28 100.0 32 ............................ AGTGCGGTCAGACCATTCACGCCACACTTGCT 949 28 100.0 32 ............................ TCCCTGCACCGGAGTGGTATCGAGCAGCCAAT 1009 28 100.0 32 ............................ ACCCTTGCGCGCAGTGCTGCGACTTCCTCCGT 1069 28 100.0 32 ............................ ATGGCGTGCAGATCGTCGAGGAACGGCTGCAT 1129 28 100.0 32 ............................ AGAACGAGCCACGGGTATCGGCCTTCGACTCA 1189 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 1249 28 100.0 33 ............................ TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 1310 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 1370 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 33 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10729-9921 **** Predicted by CRISPRDetect 2.4 *** >NZ_RADW01000110.1 Pseudomonas aeruginosa strain HUM-318-D2 PA2_F5_NODE_33_length_48773_cov_13.8875_ID_65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10728 28 100.0 32 ............................ TCGCATTGCGCCTGCGTCATGATGCCCGACTC 10668 28 100.0 32 ............................ AGTACCAGCGATCTGCGAAACCGGACAACTCG 10608 28 100.0 32 ............................ GAGGAGCACGGGACGATAACAAGCGCAAAGGG 10548 28 100.0 32 ............................ TGGTGCAGATGGCCGCCGCGCGGGTACACGTT 10488 28 100.0 32 ............................ AGGCTGCCAAGTCGGTGCGCGAGGCCGGCTTT 10428 28 100.0 32 ............................ TCATAGGGCTGCGGCAGGTTGACCACGTCGCT 10368 28 100.0 32 ............................ ACACCCTAGGCTTCGCATAATGTGCAGACGTT 10308 28 100.0 32 ............................ AACATCGACGGGTCGAACTGCTCCGGCACCTG 10248 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 10188 28 100.0 32 ............................ TCTGGCGAAGAGCGGGATGACAAGGGCAGAGC 10128 28 100.0 32 ............................ TTGCCCGTAGAAGTACGTTTCCTGTGCCATGT 10068 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 10008 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 9948 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 168-1874 **** Predicted by CRISPRDetect 2.4 *** >NZ_RADW01000203.1 Pseudomonas aeruginosa strain HUM-318-D2 PA2_F5_NODE_140_length_13954_cov_17.2472_ID_279, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 168 28 100.0 32 ............................ ACGAAAGCAAAAAAGAATTCCCGGGCTGTGTA 228 28 100.0 32 ............................ TTCGCAAGAGGGGCATCGAGGAAGTCAACACG 288 28 100.0 32 ............................ TCGGAGAGGTTCGTCAGTTCGTAGAAGCCGGT 348 28 100.0 32 ............................ TCCCAGTAGTCCCGCGTGGTGAACTTCACTCC 408 28 100.0 32 ............................ TGCTGCCGTCCCCGATCCACAGCCTGCGCGGC 468 28 100.0 32 ............................ GCCGAAACGCTCGTGCAATTCGTCAGCGATTC 528 28 100.0 32 ............................ TCAATCGGGCATCCATTGGCGGCTGGTGGGGC 588 28 100.0 32 ............................ GGCACACGAACGGATCGTTGTCGCTCGGAATG 648 28 100.0 31 ............................ CACGCATGACCTGACTCAGCAGGTCCGGCGA 707 28 100.0 32 ............................ AGGGAGGACCGGAGCGACAGGTACGACTGGCG 767 28 100.0 32 ............................ TGGACGAGCTCCAGGACGCGCGAAAAGGTACC 827 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 887 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 947 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 1007 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 1067 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 1127 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 1187 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 1247 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 1307 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 1367 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 1427 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 1487 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 1547 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 1607 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 1667 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 1727 28 100.0 32 ............................ TGCGCCCTAAATCAGTGATCCGGCGAATTTGG 1787 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 1847 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 29 28 99.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //