Array 1 110370-111518 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QGPG01000008.1 Staphylococcus pseudintermedius strain MAD424 8, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    110370	    36	  97.2	    29	............................G.......	TTACTTAGTAGAGGTTAATAAAAATGGTG 	
    110435	    36	  97.2	    30	............................G.......	AGGTAATCCGGAAGAAAAGCCTGGTATTGT	
    110501	    36	  97.2	    30	............................G.......	AAATTATCACAGGTGACTGGTCTGGGGCGT	
    110567	    36	 100.0	    29	....................................	AATCAAATGGAAAAAGAAGTGACAGGCTC 	
    110632	    36	 100.0	    29	....................................	AAATACAGTTGATTGTGTCTGAGGATAAC 	
    110697	    36	 100.0	    29	....................................	GCTTTTTCAACTGATGCGACTGGTTTCGT 	
    110762	    36	 100.0	    29	....................................	AATAAAATCAAGCGTAGACCTTTTGAATT 	
    110827	    36	 100.0	    30	....................................	AATAATCATGTCACGCGCATTAGTTGGTCG	
    110893	    36	  97.2	    29	............................G.......	AGTTGCAGATATTGCTGATATTACGGAGA 	
    110958	    36	 100.0	    30	....................................	TATTTCTAGCGTCGGTGTTGCTGTTATTAC	
    111024	    36	 100.0	    29	....................................	GAATTAGAGCGTATTAAAGATGAAGTGAC 	
    111089	    36	 100.0	    30	....................................	ACAATACTTGATGCAGGCAATAACAAGCTG	
    111155	    36	 100.0	    29	....................................	GGACAACAACAAGATATTGCTCAAGCCTA 	
    111220	    36	 100.0	    30	....................................	TTTCCTTCGTGATTTCTTCTTCTACTTCGA	
    111286	    36	 100.0	    29	....................................	GCTAAAAGTCAATGTTACTTCATTCCTTA 	
    111351	    36	 100.0	    29	....................................	TCACAAACCGTTTATGAAAAAAATACATC 	
    111416	    36	 100.0	    30	....................................	CGAAAGTAAAGATAGTATGCAAGGTGCAAG	
    111482	    36	  86.1	     0	..........................AC.TC.T...	|                             	C [111515]
==========	======	======	======	====================================	==============================	==================
        18	    36	  98.6	    29	GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	                              	       

# Left flank :   TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:75.00%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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