Array 1 26164-24676 **** Predicted by CRISPRDetect 2.4 *** >NZ_FFCH01000028.1 Neisseria meningitidis strain 2842STDY5881446, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26163 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 26097 36 97.2 30 ............A....................... ATCACTTTTAAAGGCGGCATCGGCTGGTTT 26031 36 100.0 30 .................................... AGGGGTCGTGAATGGAGTTCTTGCAGTTCG 25965 36 100.0 30 .................................... TAAGCGTTTCTTTTTTGGTCTGCTTCTGCT 25899 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 25833 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 25767 36 100.0 30 .................................... ACACAATCTCCGCCGTTCCAATCAAATGTG 25701 36 100.0 30 .................................... CTGATGAAGATACAACCGCACTAACTTTAC 25635 36 100.0 30 .................................... AATGATGTATATAAAATGCCGTAAAAAATG 25569 36 100.0 30 .................................... CGTCTGAAGGTTTGCCCATCTCCTGACAGG 25503 36 100.0 30 .................................... TCGATTGTCTATGAAAGCACTTGATGATTT 25437 36 100.0 30 .................................... CTCTTCATTGAAGAAGTTATAAGCCTTTGT 25371 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 25305 36 100.0 30 .................................... GCCTGCGTACTTGGTACGCTGGTCGCCTCC 25239 36 100.0 30 .................................... TTCATAGATCGATGCATGAGGTTTTCATGG 25173 36 100.0 30 .................................... AGGTCAAAGTGTCAGGCAAATTTAAAGGTG 25107 36 100.0 30 .................................... AAATCCATTTATCGCCCACCCTTTCCGGCC 25041 36 100.0 30 .................................... TGCTGAAATTATGGCAAGTATGGGGCAAAG 24975 36 100.0 30 .................................... TAGCAAACAAGGAATATTCAAAGTCCTTTA 24909 36 100.0 30 .................................... CGGCAATGCGGCGGCTGTGTTGGTTGGCGA 24843 36 100.0 30 .................................... TGTCTTGTTTTTCAAAGGACTGCATCAGCG 24777 36 100.0 30 .................................... CTGCTCTCCCAATGCGCGATGTCCAAACCG 24711 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //