Array 1 12451-11995 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIP01000001.1 Streptomyces sp. NRRL F-3218 contig1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 12450 30 100.0 31 .............................. CGACGGCATGCGCCCGGCAGAACCCGTACGC 12389 30 90.0 31 ..A...............A..........C ACTTCATGACCTCGCGGACGGTGGCGCCCTC 12328 30 100.0 31 .............................. ACGGGTTGTCGGCGAGCTTGAAATGCCATGC 12267 30 96.7 31 ...........T.................. GGCGGCAGTTGGGCGCCTCGGTCGCCATGAC 12206 30 90.0 31 ............AT...............T CGTGGGTCGGCCAGATGTCCATGGCAGGCGT 12145 30 93.3 31 C............................A CGCTCACCATCGGGGAAATGGCCCGGCATCT 12084 29 90.0 31 ............AT...........-.... GCGACAATGGTCGGCGTACCTGTACGACGGT 12024 29 80.0 0 ........-..C.GG......C.....T.. | T [12010] ========== ====== ====== ====== ============================== =============================== ================== 8 30 92.5 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGTCGGGCGCGGGTTGAGCTTCGACCGTGGCGCCGGGAGGACTTCGTCGCCGACCTGGACGATCACTTAATGGACGCCCTCGGGGCCTGACAACGGGCTTCGCTCACTGCTTCCTGGCTACTCCATGGCAGGGAATGACGAGTTCCTTGAGCCGCCGAAGCTCCGGTCAGGAGTCACGTGCACACGGGCCCTGGGGGCGAGGGCCGAGTCGGCCGACTCAAGGCACCGGTAGTGGTCGTCGTGGTCGAAGACCTCACCGACGTCGGCCACCAACGTGTTCGCACAGCGGGCCCAGAACACAACGCCCCTGGCCGACACCTGCGGAAGGCCGGGCCGCTTCTCTTCCACCGAAGCCGGGCCCACGAGGTCGACGGCGGGCAGAATGGCATCAGCCAAGCCACGCGCATGAACTTTTTACGACAGAAGGTCGGATATGCCGGTTTCTCAAGAAGTGAGTAAAAACCGCCACCCAGCTACCTAAAACCCCAGGTCACGAAGGG # Right flank : CGGGTGTTCGCGGTACCGCTTCGGCCGCCCCGTGTCCCGTAGACGCCCAGGGGCACTCGGCGCGACACCGGGCCGCCCTCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACGTACTCCACCGCCC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16071-15737 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIP01000001.1 Streptomyces sp. NRRL F-3218 contig1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 16070 30 96.7 31 .............................C GTGATGGGCATGGCGCGAGGGATGGCGCCGA 16009 30 100.0 31 .............................. AGACGCCTGGGGACACCCTGAGCGAGCACGT 15948 30 96.7 31 .........A.................... TCGCGGTGGGCCTGGTCCTCCTCCTCCAGGG 15887 30 100.0 31 .............................. CGGCCGCGCTCGTGAACTGGCGGATCACCAC 15826 30 96.7 31 .............................C TCGACGGCGAGTCCCTGGCGCTGCGCCTCTA 15765 29 96.7 0 .........................-.... | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CTCACCGACAAAATCCCACCCCACATCCCCAGGTCGACAGAAGACCGATCGCCGGACACCAAGGAACCCACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACCGGAAGCAACGACACCACCGCACCCACCACAGAAGAAATCGCCACCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGCCTGACCCCCATTCGACAGCCCGCCGCTGGGCTGGGCTGGCACACCACACCCCCGGGGGGGGCCAACCCCTCGGAAGGCAGAACCGCGCCCCTTCCACCGAAGCCCGGACGATGAGAACAGCGGTGGGCAGAATGGCATCAGCCGAACCACACACGCGACCCCTTTGCGAAGGAAGACGAGATATGCCGGTTTCTCAACAACACAGTAAAAACCGCCTCCCCGTCACCTAAACCCGCAGGTCACGAACA # Right flank : CGCACCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGAACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATCCGAGCCCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCATAGATTCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGTAGTCGCCCTCCGCGCACGCCCGACACAACAGATCCCGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGATCGACAGATCGGGGCTCATCCAGCACCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCATGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGCCCGTCCGCACCGGCCGACAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCCGGTGATCGGATCACCTCG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22813-23087 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIP01000019.1 Streptomyces sp. NRRL F-3218 contig19.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 22813 30 100.0 32 .............................. GCTCGGCGCGGGCCTTCTTCCGCTCGGCCTTG 22875 30 96.7 31 .............................G CCGTCCCTGACGACGTCATGACGCAGGCCAG 22936 30 96.7 31 .............................C GGTCCTGCGCGACACGTACGGGGTGACGATC 22997 30 96.7 31 .............................T GGAGGCTGCGGCGCGAGAGCACGCCTGGCAG 23058 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 5 30 98.0 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : ACCGACAAAATCCCACCCCACCTCCCCAGGGCGACAGAAGACCGATCGCCGGACACCAAGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCCCCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCGCACACTCACGGCGGCGAGTCCACCATCCCCACCCCGGACGAGATCGCCTCCGTCAAAGCCCACGTCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTAACCCCCAGGCGATGGGTCGTTGTTGGGCAGGACGACCACACCGCGCCCCGGGGCCGACTCCACGGAAGGCAGAGCCACGCCCCTTCCACCGAAGCCGGGACAATGAGACCAGTGGTGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGTGAAAACCGTCTCCCCGTCACCTAAACCCCCAGGTCACGAAGG # Right flank : ACGGCACGGCTGCGCGCCGCCCTGTGGTCCCGCGAACGCGGGGGCGACCCTGCGCCCCCGCGTGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTTCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGTCGGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAACAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCAGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.20,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 69302-67076 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIP01000029.1 Streptomyces sp. NRRL F-3218 contig29.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================== ================== 69301 33 93.9 28 ...............................CT TGCCCATGCCGGTCATGCCCTTGCCGAG 69240 33 93.9 50 .............................A.C. GCTTACCGCGGGCGACGATCTCCTTGCGGTCCTCCCCGCCGAGCCTGGCC 69157 33 90.9 28 .............................AAC. TGACGTCGTCCATGAAGGTCTCGTACTC 69096 33 90.9 28 .............................AA.A AGACCGACGAAGAGAAGGCCGCCGCCAA 69035 33 90.9 28 ..............................GCA TCAACGACCAGCTCGGCCGCCAGGTCGT 68974 33 93.9 28 ...............................TT CTGGCACCTGACCCTCGCCCAACTCCTC 68913 33 97.0 24 ................................A CATGAGCGACACCGAGATCCAGCT ACAG [68881] 68852 33 93.9 28 ..............................GA. CTGGTCCCGGTGGACATCCATCTGTCCG 68791 33 93.9 28 .............................AA.. CCAAGGAGTTCGGGGCCAACCTCGCGAA 68730 33 90.9 28 .............................G.CT GTCCAAGGCCGCCGCAGTCCGAGTGGTG 68669 33 97.0 28 ....................A............ ACCGCGGTAACCCCACCGTAGGGGTGCC 68608 33 90.9 28 .............................ATC. TGACGGTGCAGTTCGGGCTCGACAGTGG 68547 33 90.9 28 .............................T.CA CGTTCACCGTTCAGAGCTGCACGAACGC 68486 33 90.9 28 .............................AA.C GCCCTACACGGTAGTCGACGTCCTCGGG 68425 33 100.0 28 ................................. CCACCACCCCGTAAGGAGACGGCATGCC 68364 33 97.0 24 ................................A GCAGGAACACGCCGGGACCTTCCT TAAG [68332] 68303 33 100.0 28 ................................. TCTTCTCGTGGCCGGTGTACCGCCGGTC 68242 33 97.0 28 ..............................T.. GGCTGGTCCTCGCGGGCTACATCGGCCG 68181 33 90.9 28 ..............................TCA CCGCCCTCGCCGCCCGCCTCGCCGGCAA 68120 33 93.9 28 .............................AA.. AGAACCCGGTCCACTTCTCCACCACGGC 68059 33 97.0 28 ..............................A.. GCAACATGATCTGGTCCGGTGGGAAGGT 67998 33 90.9 3 .............................AGT. GTG Deletion [67963] 67962 33 93.9 28 ..............................TC. CGGCGGCGGGTACCGGTATCGGTCTGCT 67901 33 93.9 28 .......T.....................A... TGACCTCGCTCAACACCCCCACCGAGCA 67840 33 87.9 28 ...........G.................GT.A AGACACTGGAGCCCGCGGTCGGGCCGAC 67779 33 93.9 28 ..............................G.C AGGCGGCCCGCCGGGCCCGCCGGTGGGT 67718 33 87.9 28 ............................CA.TC CAGGACGCACCGGATCGCGTGAGGACCT 67657 33 90.9 28 ..............................GCC ACATCACGGAGGCCCTCCGCGCCGAGCT 67596 33 90.9 28 .............................GT.C GGCATGCGGATACGGAGGACTGGGTGGT 67535 33 90.9 26 ............A.................T.C GTGTGGATCGACGCGGACGACGAGCC AA [67505] 67474 33 93.9 28 .............................T..A CCTGGTCTGGGTTCACCCGGCCGCAGGC 67413 33 93.9 28 ..............................G.C ACGAGTCCGGCCGGGAGGGCGGTGAGGC 67352 33 93.9 28 ..............................A.C CGCACGGCGACTGCGCGAAGAGGAGCAC 67291 33 90.9 28 ...T.........................GT.. TCCGGATGACTTGTGTGACGACGATAGG 67230 33 93.9 28 ..............................A.C GGGTCGCCGGGGTGGAGTACCTGTCGTG 67169 33 93.9 28 .............................A.A. CTCCCTTACAACTGACGGGCGCGCGGGC 67108 33 90.9 0 .............................GAC. | ========== ====== ====== ====== ================================= ================================================== ================== 37 33 93.2 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Left flank : GACGAGCT # Right flank : CACCGATGAACCCGGAGCAGCGCTCCAAGTCCGGGCGCGACCGCCGAGGTGATGCTGGTCAGCCTGTCCCGCTCGCCTGAGAGGCGTTGCAAGGCTACTCCGGGAGTGCCATGTCGAGGCCAGGTCGGTTGCTGGGCGGCCATCTTGGCGCATAGCTCCTTGAGGGCTTGGCGGCCGTCGGCGAAGTGCTCCTCGTTCCCGAATTGTTCGCGGAGCTGCCGTTCGGCGGCGGCCTGGATCATCGGGTTGGTGTGCTGCTGCCTGCTCCAGGTGGCGCGGTGGGCGGCGATGACTTCGCGGTAGCCCTCCGGCGGATCCGCACGCCGCATCGGCGCTGCGAGTGCGGTCAAAGTGGAGACGGTTCGGCGGCCGCCGTGGCGGGGGCGGCGACCTTTACAGGTGCGGGCGCCAGGACGTTCAGGGCGCGGACGTTCGCGGCGGGCACCTTCTCTTTGGCCGCCGCAATCAGCTTCGGCGCGCTCCAGCGCAGCTGCGTTGCG # Questionable array : NO Score: 4.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.08, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 259297-259023 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIP01000005.1 Streptomyces sp. NRRL F-3218 contig5.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 259296 30 100.0 31 .............................. TCGGGTTGCGCAGCATCCGGGTAATGACAGC 259235 30 96.7 31 .............................G TCACCCGGCCGCGCCGGGCCCACATCCGGTA 259174 30 93.3 31 ............C................G CGCCGTTCTCCTCCTTGAGGGTTCCGGCGAT 259113 30 86.7 31 ...........TGG............T... GCAGGGGCAGGAAGTCCAGGACTGCGTCGCC 259052 30 70.0 0 ..............GC.T....CT..GAAT | ========== ====== ====== ====== ============================== =============================== ================== 5 30 89.3 31 GTGGTCCCCGCGTACGCGGGGGTGGTCCCA # Left flank : CGACAAGATTCCGCCCCGCCTCCCCGGGGCGGTGGAAGTCCGTTCGCCGGGCGCCAAGGAACCGATCTACGAAGCCCTCGTCGAATGCACCAACTGTCGCCGTCCAGGCCCATCGGAAGCCCTTCCTGACGGCCTCTGCCGCCCCTGCCACCGCGCCCACACCACGGGCGGCGACGACACTGCCGTACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAATCTCCTCAAGCCCGTCTGACTCCCCGACCACCACACCCTTCGTCGGGCAGGCCGGGCTTACCGCACCCCCGGGGCCCACGCCTGCGAAAGGCCTGACCACAGCTCTTCCACCGAAGCCGGGCCGATGAGACCGGCGGCGGGCAGAATGGCATCAGCCGAACCACACGTGACCACACTGCGGCAGAAGGCGAGATATGTCGGCTTCTCAAGAAGTAAGCAAAACCCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGG # Right flank : GCCGCTCCTCAGGTTCTTGCCGTGCTCACCGACATCCTTGCCGCCGTCGAGGACGGTGAGCGGGGGGCCTTGTGGAATCTCTCCGAAGGCGGGCGGGAGTTGGACGCCAATCTGGTGTGGCTGCCCGCCGGGGCCGAGGTCGGGGAGCATCAGGAGGACGTGCTCGACGTGTTCCTCGTCGTTCTGGAGGGTGGGGGCACGGTGAAGGCGGCGGGCGGCCGTGAGCTGGGGCTGGAGGCCGGGGCCGTGCTCTGGTTGCCGCGTACGTCCCGGCGCGCGCTGGCCGCCGGGCCGGACGGGCTCGGGTATCTCACCGTCCACCGCCGCCGCCCCGGCCTCGCGATCTCCGCGCCGAGTGCGGCGTACGAGGGTGGCGAGGGGCCCTGCATGCTGGACCGGGTCTGCCCCGAGTGCGGGCGGCTGTCGCAGGACCCCGCCCCGGTCTTCTGCAGCCGGTGCGGGGAGCGATTCCCCGAGAGGTGAGCCCGGCGGTGAGCCGA # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2623-2349 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIP01000047.1 Streptomyces sp. NRRL F-3218 contig47.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2622 30 93.3 31 ...G.........................C CGCGGGCCTCCGCGTCCACGGCGAGAGTGAG 2561 30 100.0 31 .............................. GTCCGTCGCTGCCGACGCCGAACCCGGTCAG 2500 30 96.7 30 .............................C GGGCGAGGGCGGCACCATGACGCCCGGCCA 2440 30 93.3 31 ...G..................C....... CGTTGGCGTAGGCGCACCCCTGCTCCGGGCC 2379 30 83.3 0 ...T......T...............A.TT | C [2353] ========== ====== ====== ====== ============================== =============================== ================== 5 30 93.3 31 GTGATCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : AACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCACCGGCTCGATGCCCGGCCTCTGAAAACCAACCGACGACGGTCGGCACACACCGCAGGTTGCAACCGCCGACCTGCGCAAACACCTCGGGAGACCGCCATACCGGCCTCGAAGGAATAGCCGCGCCCCAAGCACACACCATCAACCTCCGCCACCCCCTCAAACCGTCGAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGGTAGACACACCGCACACCGACGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGCCCGGGTGGCGGGCAGAATGGCATCAGCCGAATCACACCTGTGGCCACTTTGCCCCGGAGAGCAAGATATGCCGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGACACCTAAACCCGCAGGTCACGAACA # Right flank : GTCCCAAGTCGAGGAGTCTGCGGACCTACCAACGCAGTCGGGGCAGTAACTGCGGTCGCCCTACCTGCTTCGATACGGAAATCTACAGGCCTCGCAACGAAGTTGAGCTGACGGTCAACGACCTCAACTGGCTCCGTTCGGTGGCTGCGCGATGCGACTAGCGCGCCCACGTCTTCCAAGGAACCTCGCCCGCCGCAACGATCTGGCTCGGGCTTCGGGGGTAGATCCATTATCGCGCTCCGCGAAGGCGCTTGTCACCGTTCTCCGGAATGATCTTTACGCCCGTTATGCACTCGTAGGGTTACAGGGATCGAGCACGAAATACCAACCCGATGTGGAGTCGAGAGTGGTACATGACGTTGCCGCACTGGCGAAGGAACTCACCGCCATGGCTGCGGCCGATCAACAGTCCTCAGCCCACGCCAACAGCGATGATCCCGCCGAGCAGTTGGCATGGCGCCGGATCACCGCGCAGCACGGCGACCGGCTCGGTCAGATCA # Questionable array : NO Score: 3.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6199-5805 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIP01000054.1 Streptomyces sp. NRRL F-3218 contig54.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6198 29 93.1 32 A...........................G CCGAAGACGGCCCGCGCACCGCGCCGCCCGAA 6137 29 96.6 32 A............................ GTGGCGATGGGGATGGTGACGGTGCCGCGTTC 6076 29 100.0 32 ............................. CGCGGATTCGACTTTCACACAGTGGAGGAGGA 6015 29 100.0 32 ............................. GCCAGGTAGGTGCCGTCGGCGGTGTCGCACCC 5954 29 96.6 32 ............................T TCCAGGACGACCCGCAAGGTGTCAGTGATGTA 5893 29 96.6 32 ............................G CTCCGGAAGGCTTGTGCTGGAGTGCCGAAGGC 5832 28 89.7 0 ............T............-..G | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : CCAGCAGGCGTGGCACGCCACCTAGTGATCTGCCGCCCGATCTGGAGCGCCTGCGCGTCCTGGAGACGTGGCTGCTGCTGTCCCTGGACCGTGTCCGCGAGCAGATCGCGGCCGTCGAGCGCGAGACCTGCCCGCACCGGGCCCCGGCGCCCCCGGCCGGGCCCCGGCCCGCCGGGCCGCCGGGTCCGCCGACGCCTGCCTGGGGCATCGCGGACGCCGGTCTCGGCATCCCCGCTCCCGGCTAGGGGGTGAAGCGGGGGACTTGCCCCGCTCGCTCACGCCCTGGAGGCATCATGATCGTTCACTTCGTCGGCGGCCCGCTCGCCGGTCGCGTCCTTGAGACCACCGACGACCCGTGGTTCGGGGGCTGGTTCACGATCGAGGGCGCGGCCGGCAAGGCGCTGTACGTTCCGGTCCACCGCGACCCGGTAACGGGAGCCGTCATGGCGGAAGTGAATGAAAACCAGCCGGTGGGGCGGTAGCGTCACAGGTCGTGAAGC # Right flank : TGACCCGGCTGTAGAGGGTTTGGGTGTGGAGACGCCCGGGCCCGTGGCGGATAGGGTGCGGGGCAGACCGCGCCGTATGGGTGTGCGGGACAGGTCCGGGTCCCCTGGAGTACGGCTCGGACCCCTGGTGCCGGTGGCTACTTGGCCGCCGGTGCCAGGTCCGGGCGCAGCCGTTTCGGGGCCTGGGCGGGGAAGTGGCCGGCACCCTCAGTCCGCTCACGGGGGTGGGGCGGGTGGCACGGGTACCGGCCGACCCCAAAGCACAGCCAGCACGCCGGCCGCACCTTGCCCGGTGAGAGTAGTAAAGCTAGTGGCCTTTTCTCGTACCCCGTACGTCAGTTGAGAGGCCCCTCCGTGATCTGTGCCGGTCGCCGTCATCTCGTGCGCACCCTCGCGGACCTCGCCGCGCAGCAGGGCATAGAGCTCCAGACCTTTCTGAACCGCGCCCCCCACAAAAGCGCCGGCTACCCCGCGCCGGTCAGCTCCCCGGGGGCGCGGGC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : ATGCTCCCCGCGCCTGCGGGGGTGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2861-1670 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIP01000052.1 Streptomyces sp. NRRL F-3218 contig52.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 2860 33 93.9 28 .............................A.G. TCTCCGCCCTCTCCCAGCGCGAGGGCGA 2799 33 93.9 28 .............................G..A ACACCGCCCTCACCAGCGACGAGGTTGA 2738 33 93.9 28 ...............................TC GTTTCCACCGCAGGACAGACCCCGTGGC 2677 33 87.9 28 .............................ATGT CGGTGACGGGCCAGTCCCAGACGGGAGC 2616 33 100.0 28 ................................. CCCCGGGGTACCTCGAGATGCCGGACTT 2555 33 87.9 28 .............................CTGC CCGCCGGGCCCGCGAGGCGGCCGAAGCC 2494 33 90.9 28 .............................G.GT TCGAGTCCGGTGGCATGGAGCGGGCCAT 2433 33 100.0 28 ................................. TCGTCCCGGTCTACGGCGCGCGCCCCGA 2372 33 93.9 28 .............................GG.. ACCGCGGAAAGGCTGACAGCCCATTCCC 2311 33 87.9 28 .............................CATT CACCGAGGGCACCAGCGACTACCAGCGC 2250 33 87.9 28 .............................CTGA CCGCAGCCGAGCATTCGCGGCGCATGGT 2189 33 93.9 28 .............................CA.. CCCGCACCGCCGCCGACGCCTGGACCGC 2128 33 90.9 28 .............................C.GT GCGCGACGCCCTTGGACGGGTCGTCCCG 2067 33 97.0 28 .............................G... AGGCGCACTACCGCGAGACCGTACTCAA 2006 33 90.9 27 .............................C.GC CGAGGTGGCCGTGCGCGCGGCCCGAGC 1946 33 93.9 28 .............................G..A ACGGGTCCTCGGCCGCCCTGTCGCACTT 1885 33 100.0 28 ................................. GCACGGGCTGGCTGATGCTGGAGTGCTG 1824 33 93.9 28 ...............................GA AGGGGAGAGCCTTTTCTCGTACGCCCGC 1763 33 90.9 28 .............................CAT. ACGCTCGTTCAGCCCGAGGCCACCACCC 1702 33 87.9 0 ..............G..............A.GT | ========== ====== ====== ====== ================================= ============================ ================== 20 33 92.9 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCCG # Left flank : CCCACGCATCGTCCGGGACGTCCAGAGCCTCCTGACACCACGCTCCACAGATGTCACCGACGAGGACGAACCACAGGAGAAGCGCGACATCCACCTGGTCCACCTCTGGGATCCCAAGGCGGGCGCCCTTCCCGCCGGCGTCAACTACGCGGCCCGAGGTGAATGATGCCGTCCCTGCTCGTGATCGCCACCACGGCCGTTCCTGACCACCTCCGCGGAGCACTCAGCCGCTGGACCAGCGAGGTCGTCCCCGGCATCTTCGTCGGCAGCGTCTCCGCCCGCGTCCGCGAACAACTCTGGCAGGCCGTTACCGAGACCGTGGAGAACGGAGCCGCCGTCCTCGTCCACCCCGCCCCCACCGAACAGGGCTACGCGGTCCGAACCGCTGGCACCCGCCGCCGCGTCCCCGCCGATTTCGACGGACTTACCCTGATCCGTATGACCGCCACACCGAAGGTAAAGGAAGTGCAAAGTCCTTCTTAAGGTGCAGGTCAGGAAGT # Right flank : ACGCACCGCCCTCCAGGACGACCTCCGGATTCGCCCCGCCGACGCTGTTGTACAGGGCTGGCGCAGAGATCGGACCGGCAGCAGGAGGGGGTGTGCGTCAGCTCGTCGAGGGGTTGACGGTGAGGGCGGCCATGTTGTTCGTCAGGTCGGGGTCGAAGGTGCGGACAGGGGGGTTCGTAGGCGTCGTTGTAGAGGGCGGCGCGGCCGGTGGCGTTCAGGGATGACCTCACGATATGGAGGCCGAAGGGGAAGGGTGTGGGCGGCGAGCTTGCCGGATTCGGTGAGGTAGATGGGGGTGTTGCAGCGGTAGCGGGTCTCGGACTGAGACCAGCAGCTGTCGGGGGCGGAGGCGACCGAGGTGCCGACGGGGATGTCGATGTCGACGGTCGCGGCGGGTTCGCCCGCGCTGAGGGAGGCGACCCAGGCGGGGGCCCGCGTTGTGGACGGGGACGGTGTCGCCGGCCGCGCCGGAGACGGTGGAGGCGGTCAGCCGGTAGTCG # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12748-13268 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIP01000052.1 Streptomyces sp. NRRL F-3218 contig52.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 12748 33 93.9 28 ..............................G.T CGCGGCGGTTGAGGCGCGCCGAGCAAAG 12809 33 93.9 28 .............................T..C TGGGCTTGCCCCCGTACACCATCGACTC 12870 33 90.9 28 .............................AT.A GGTTGCCTTCGTCGTCGTAGTAGGTCCG 12931 33 100.0 28 ................................. TACGCCTCCTGCTGGTTCTGGTCCTTGG 12992 33 90.9 28 .............................GA.C TGGAGAAGCGGGCCGACGAGCTGAGTCG 13053 33 90.9 28 .............................G.TC ACCGTGGACGTGAAGGAAGCATCGCAGA 13114 33 90.9 28 ..............................TCA TCGGGTGCCGCGGGTCGAGGCCCGGGTC 13175 33 93.9 28 .............................A..T GGACGGTGCGGCCGACCTTCATGTACCG 13236 33 97.0 0 ..............................G.. | ========== ====== ====== ====== ================================= ============================ ================== 9 33 93.6 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Left flank : AGGCCAGCACACAGCCCAACAAGCGCCCGAGCGCGATCCTGCTCCCCGGCCAAACCCATTCCTCGAGCTATACACACCCTCTGGTTCTCCGACAGGTACACATCCCACAAGTGAAGCGCCATCGCAGCCGCGTCAAGAAGATGTCTCACCAGCGGGTAGGGAGGCAACGCCGGATCCAACCCACGAAACTTCCCCCACGCCGATTCATCCACCACGCTCTGTCTCTGCAACACGCCAGCCCTCCCTGATCCGCCACTCGCCACGCTCCCGCGACCTAAGCCAACCTGCCACCAATCGCATACAAGCACCGGCACTGACAGTGATACCGCTACTCGCAGTCCGACGTCCGCCAATCGGTCAATGACGGGCGTCGTGCTCGCCTCGACTACCTTGCAAGCTGCGCCTGGATACAGTGACGGCGTGCAACTGACTGAGCGCCTCACCCACTCAAGAATGGCAAAGGAAGTGCAAAGCCACTCTTAAGGTGCAGGTCAGGAAGT # Right flank : GGA # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 518-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIP01000080.1 Streptomyces sp. NRRL F-3218 contig80.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 517 33 93.9 28 .............................AC.. GGACGGTGCGGCCGACCTTCATGTACCG 456 33 97.0 28 ................................G GGAACTCGCGGTGGAGTGCGCGCAGCTT 395 33 93.9 28 ..............................C.G GGAGAGCCTCCTGCGGATCGTGCCGGTG 334 33 93.9 26 ..............................A.C AGGTCGAGCTGATCGACCGGTGCGCC TT [304] 273 33 87.9 28 .............................TTTC CATGGCAACCCCAATCCGAGGGAGGGGG 212 33 100.0 28 ................................. ACGCGACCCACACCGGGCTCGGCCACAT 151 33 93.9 28 .............................GA.. GATGGCCGAAGACCGATGGGACGAGCTC 90 33 93.9 28 ..............................CC. TGCCCATGCCGGTCATGCCCTTGCCGAG 29 29 87.9 0 .............................---- | ========== ====== ====== ====== ================================= ============================ ================== 9 33 93.6 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCGGT # Left flank : T # Right flank : G # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:-1.5, 6:0.25, 7:-0.02, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10-226 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIP01000096.1 Streptomyces sp. NRRL F-3218 contig96.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 10 33 93.9 28 .............................C.C. TGCCCATGCCGGTCATGCCCTTGCCGAG 71 33 97.0 28 ................................G CGCGCTGTGGCGACGCGTGCCAGGTCAA 132 33 100.0 28 ................................. CGACCGCGCCCTGATCGGGAGCCTGGCC 193 33 97.0 0 .............................A... | A [223] ========== ====== ====== ====== ================================= ============================ ================== 4 33 97.0 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGGCGT # Left flank : GACGAGCTCG # Right flank : GACG # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGGCGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //