Array 1 297940-298237 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVRD01000007.1 Bacillus sp. LNXM10 NODE_7_length_326738_cov_66.0117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 297940 32 100.0 36 ................................ TCCATCAGAACGGATCTCAATTGGCGTCGTGAGCAG 298008 32 96.9 36 ..................A............. TGACCTAGTCCCTCGTTATTATAAAGGTGAAAAATT 298076 32 100.0 32 ................................ ATCAATGTCTGTCGCCATTGCTTTTTTACCAA 298140 31 93.8 35 .................-.........T.... AATGATTGTGTGACCGTGCTCAGGTGCTTCTATGT 298206 32 81.2 0 ........T..C.G.....TA........G.. | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 94.4 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AATGAAAGAAATAGCCGATCGGCTAGGCGAAACGAGACAAAACATCTCAAACATCCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACCAATGGGGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTAATCGAAAAAGTAGATCGGCTGATTTACCAAGAGGGGCCTGGATTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGTGAACTGATGGTGCGAATGTGAGGTGAACATAAACCCCGGTGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTGTGAAGGGAAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTGCCTTTCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TAGCTTGAAAAAAATGTTGACAGTTGGGCTTGATTTAGGTGTGAAAAACATGACTCTGGCTCAGTAGTCATGTTTTTAAATGAATTCAAAGCTGTTGATGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAATAGGATTAAGAAAAATTCGGTGCGAATGTGAGGTGGACATAAAATCCCCGGAACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTATTTAAAGGTGAAAACAAAATTCTATATAGAAAATTGAGGGTTTTGACTATGATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTCTATTAACATCATTTCCCAAGTGAGTATAAACCGTCGCACTCTACATGAGTGCGTGGATTGAAATCGTAAGTACCAACCGTCTTCTTGGAGAGCGAAAGCGTCGCACTCTACATGAGTGCGTGGATTGAAAT # Questionable array : NO Score: 8.70 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 298572-299065 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVRD01000007.1 Bacillus sp. LNXM10 NODE_7_length_326738_cov_66.0117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 298572 32 100.0 34 ................................ TCTATTAACATCATTTCCCAAGTGAGTATAAACC 298638 32 100.0 35 ................................ CGTAAGTACCAACCGTCTTCTTGGAGAGCGAAAGC 298705 32 100.0 33 ................................ GGAACATAGACAACCTTTCCGGTTTGTTTTGCT 298770 32 100.0 33 ................................ TTGTCGAAGCCTGTGAATTTCACAGTGTAAAGA 298835 32 100.0 34 ................................ TTACTATCTGTATAACTTTCGGAGACGGATTTGA 298901 32 87.5 35 ......T....TT...........G....... TCGGTATCGTCACTCTACCTCGGATATGCAAAAAC 298968 31 93.8 35 ...........T.....-.............. AATGATTGTGTGACCATGCTCAGGTGCTTCTATTT 299034 32 84.4 0 ........T..........TA........GG. | ========== ====== ====== ====== ================================ =================================== ================== 8 32 95.7 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : AATTGTCGCACTCTATATGAGTGCGTGGATTGAAATATCAATGTCTGTCGCCATTGCTTTTTTACCAAGTCGCACTCTATATGAGGCGTGGATTTAAATAATGATTGTGTGACCGTGCTCAGGTGCTTCTATGTGTCGCACTTTACAGGAGTGTATGGATTGAGATAGCTTGAAAAAAATGTTGACAGTTGGGCTTGATTTAGGTGTGAAAAACATGACTCTGGCTCAGTAGTCATGTTTTTAAATGAATTCAAAGCTGTTGATGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAATAGGATTAAGAAAAATTCGGTGCGAATGTGAGGTGGACATAAAATCCCCGGAACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTATTTAAAGGTGAAAACAAAATTCTATATAGAAAATTGAGGGTTTTGACTATGATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : TAGCTTGAAAGAAATGTTGACAGTTGCGCTTGATTTAGGTGTGAAAAACATGACTCTGGCTCAGTAGTCATATTTTTAAATGAATTCAAACCTGTTGATGAAATCATGAAAATACCTTTAGAGCAATAGTTGTTAATTAAATAGGATTAAGAAATATTCGGTGCGAATGTGAGGTGAACATAAAATCCCCGGTGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTCATGAAGGAGAAAACAAAATCCTATATTGAAATTTGTGGATTTTGACTATTATTTCCTAAAAAATGTTACATTTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGAATTGAAATTTCGAGTGTAACGACATGAACTCCATTAGACACTAGTCGCACTCTACATGAGTGCGTGAATTGAAATCCAATCCACATCATATTGGCCCAAATTTGTGTTAGTCGCACTCTATATGAGTGCGTGAATTGAAATGATGCTA # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 299860-300086 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVRD01000007.1 Bacillus sp. LNXM10 NODE_7_length_326738_cov_66.0117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 299860 32 100.0 33 ................................ ATTTTCTGTTCTTGCTCGGCGCGCATTTCCAAT 299925 32 100.0 34 ................................ CATGAGACATATAACAATCGATTCCCGCACGTAG 299991 32 100.0 32 ................................ TTCCATCTGCAACCGTTGTTTATATCCATCAA 300055 32 84.4 0 .............A.......C.AT..T.... | ========== ====== ====== ====== ================================ ================================== ================== 4 32 96.1 33 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CTAAAAAATGTTACATTTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGAATTGAAATTTCGAGTGTAACGACATGAACTCCATTAGACACTAGTCGCACTCTACATGAGTGCGTGAATTGAAATCCAATCCACATCATATTGGCCCAAATTTGTGTTAGTCGCACTCTATATGAGTGCGTGAATTGAAATGATGCTAGTGATTCCATTACAAAGTCCCCCATAGGGTCGCACTCTATATGAGTGGGAGGAATAAAATTCTTGTCAGTAGGTAGCTTGAATCATGAGTAATAGTTTTTAATTAAATAGGATTAAGAAAGATTCGGTGCAAATGTGAGGTGAACATAAAATCCTTGGTGCATTCGCACCTTTTTATTCGTTAAAAATGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCGTATAGAAAATTAAGGGTTTTGGCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TGATTGTCTCTTAAACGGGTATGGCCACCTCAAATCCATCTTCTTACAATATCCTCTTTCAAATAGCCATCAAATATACTGTTCATTTGTACAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAATGAATGATGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAACCATGGCGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGTTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGATGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGAGCAGT # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 307725-308215 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVRD01000007.1 Bacillus sp. LNXM10 NODE_7_length_326738_cov_66.0117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 307725 32 100.0 34 ................................ TTGTCCATGTACGCTTTTTCTATTTGTTCAGGTT 307791 32 100.0 33 ................................ ACAAAGAATCAACCCTTGGGGTGTCAAAGTCAC 307856 32 100.0 34 ................................ TAGCCGGCGGGTAGTCTTCGAGGTTGAAGTCCGC 307922 32 100.0 34 ................................ ATAGAGCCTTTATTTACAACAGCGTCATCAATGG 307988 32 96.9 33 .................C.............. CTGTTCAGACATAGCTTTTGATAATTTCATTAT 308053 32 84.4 32 .............A.....TA........GG. AGCTTGAAAGAAATGCCACCCATTGGTTGGGT 308117 32 93.8 34 ...........T...G................ TGAAAAGCCTTATAGATCGTTGTTTTGTTTTCTA 308183 32 90.6 0 ...................GA......A.... | T [308212] ========== ====== ====== ====== ================================ ================================== ================== 8 32 95.7 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GCCTGAGACAGTAAAGGAAGCATTCAAAGTAGATGTGATGACACCACATCATTCAAACTACAACAGTGTCAAGCTAGATAAGATGAACAAAGAGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCGACCAGAAGAATCAGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGAGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGTCATTTCATAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTAGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGGTCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTGAGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGATGAAATATAAAGAAGTATGATGAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGAAATATTCGCACCGTTTCATTCAATAAAATGAGAAAAAATGTATATTATTTAGAGGGGAAAACAAAATTCTATATAGAAACTTGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATAATGGAATTGCGTAGTAAACGATATCTAAATTCGAGTCGCACTCTACATGAGTGCTTGGATTGAAATGGTGAATGGTGGGAAAAGACAGGAAAGCCTGGTGTCGCACTCAACATAAGTGCATAGTTCACAGTTTCTGCGAATTACATACATTCAAATATCTATCCCCCTAAATCCAAGC # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //