Array 1 1142361-1143244 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026092.2 Ralstonia solanacearum strain SFC chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1142361 29 96.6 32 ....................A........ CCTCTACCAGAGAGGGAACCCTATTTTTGATG 1142422 29 96.6 32 ....................A........ GGCGCGGGCTCAATCACGGATTTGGTGGACAA 1142483 29 96.6 32 ....................A........ CATTGTGCTGGATATCGATAGCCCTGGCGGAT 1142544 29 96.6 32 ....................A........ GCAAATCCCGCTGTCGGCCAGCTCCGGGCGGC 1142605 29 96.6 32 ....................A........ GTAAAAAACAGTCATACCTCGCTGTCTCCCTT 1142666 29 100.0 32 ............................. TTGACCGACGCGGCGTAGCCCAGCACGAACGC 1142727 29 100.0 32 ............................. GCAACTACGTGGTTATCCGCGCCGGCGAGAAA 1142788 29 100.0 32 ............................. GTGATCACGAATCTGCCGCTGTTGCTGGATGC 1142849 29 100.0 32 ............................. CGCTTTGCGTGAGGAGTGTTCTCCCAAATGGT 1142910 29 100.0 32 ............................. CAGCCGCACAACCTGGCAGCATTCCGGTACGC 1142971 29 100.0 32 ............................. AAAGAGCGCGGTCCGTGCAAAACCATATCGAA 1143032 29 100.0 32 ............................. CGCGTGACGTGGCTCGGCGAGTACACGCAGAT 1143093 29 100.0 33 ............................. TGGGCGCTGTACCAGATCGGCCAATACTGCGAC 1143155 29 100.0 32 ............................. CAGGCAGTTGACACGACGAGCAGACGCGCTGC 1143216 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.6 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACGATCGTGCAGTACCTGCAGTTCGCACGCGACTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGGCAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGGGCCGATTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : GTCCTCGGCGGTGAAGTTCTGGTAGTGGTAGAGGTGTTCCCCGCGTGGGCTCATTTGGATAGTCTTTATATTTGCTGAAGCTGTCAGGAAAATCCAAAATAAATGTCCACCGGGCTGTTACGATCGTCCGTCGGGGAGCAGGCACAGATAGACATTTCCTGACATCAAGAAAAGGCATCCGGCTGACATGGAAAAAGGGGCGGCGCAATACTTTGCCTATTGGGGCAAGGCACGCATGCAGGAAGGTACCAGTCAGCTTTATCACCTCCTTGTCTTTCATGCATTGGATGTCGCAGCTTGCGGCGCGGAGTTGCTGCGCCTGCCCCGGTTTTCTCTTGCGCCCCTGGCTGCGGAACTCGGTTGGCCATTGCGGGTTGTCGAAAAGATATTCATCTGGTTTCTGGCGCTGCACGATCTTGGCAAGTTTGCACGCGCTTTTCAAAATCTGGCGCCGGGGTTATCGCCCGATCTCGTCTCTCCTGATCCGAAAAAACAGTATT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : GTGTTCCCCGCGTGGGCGGGAATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1152585-1154995 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026092.2 Ralstonia solanacearum strain SFC chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1152585 29 100.0 32 ............................. TGTTTATCATCATAGATAGATACTATTAATGA 1152646 29 100.0 32 ............................. TCTCTCTCCAGAGACTGGAATGGCAATCAGCC 1152707 29 100.0 32 ............................. CGCCACAAGCGCGCCATGAAATGAACGACGAC 1152768 29 100.0 32 ............................. GATCCAGAGGGTTTTCGTCGGCAGCACCAGGC 1152829 29 100.0 32 ............................. TTGGCAGTCCGCTGGCTGTCGCCATCCTTGCC 1152890 29 100.0 32 ............................. CTCAGATGTTCGACGCGCACGGTGGCGTCGTA 1152951 29 100.0 32 ............................. TAGCAACTCGAGTGGTTCGACCCTCGACAGAA 1153012 29 100.0 32 ............................. CTGCTCGGTTTCGACAAAGCGGTCGTCGAGAT 1153073 29 100.0 32 ............................. CTCGGGACGGGGACATTGGACGTCGTCATGCG 1153134 29 100.0 33 ............................. CGCGTGATCCTCAATCCGGCCGGTCAGCATCAC 1153196 29 100.0 32 ............................. GTCTCGGGCCCGTGGAAGTGGCTCGATACCTA 1153257 29 100.0 32 ............................. CCTCGTGGATGGCCGTATGAATCATAAATAAT 1153318 29 100.0 32 ............................. TCGTAGCCATACGCGCCGCCGAATCCGATGAG 1153379 29 100.0 32 ............................. GAGGTTAAAATGATTTTGTTTGGCGAAATTGT 1153440 29 100.0 32 ............................. CGATTCTCCTACCCAAAATTGGGTATGGTCTC 1153501 29 100.0 32 ............................. CCGCGTGTGCCCGCTCTCTTATCCCAGTGCAG 1153562 29 100.0 32 ............................. AGTTCTTCCAATTCAACACGCCGCTGTCCTCG 1153623 29 100.0 32 ............................. ACCTTGTATTTATTAGGTTTGGTGAAAGAGTG 1153684 29 100.0 32 ............................. CAGGTTGTGAACTAATCAGGCAAAGGGGGCAT 1153745 29 100.0 32 ............................. CTTCGGCATGACGACAGACATTTTGTCCAGCA 1153806 29 100.0 32 ............................. TTCAGGCGCTTTTCATTGACGGTGGAGCTGTC 1153867 29 100.0 32 ............................. GAGGCTGGCCCACCTCTGCTTAGGCGTATGTC 1153928 29 100.0 32 ............................. TTGCCGAAGGCGAACACGTTCGACACGTCCGT 1153989 29 100.0 32 ............................. CAACTGAACAGCACTTACCTGTTCGGCGTGCA 1154050 29 100.0 32 ............................. CGAATAACGCCGCCGCCCTCTGGCGTTGATAC 1154111 29 100.0 33 ............................. GTGACCTATCAGCGCAACACCGGCTACCGCGTC 1154173 29 100.0 32 ............................. ACATCGTGCCTTTTCTGCAGCCGAGGATTCCC 1154234 29 100.0 32 ............................. ACAATAAACCTGGGGCCAGTGTCTTTCGCTTT 1154295 29 100.0 32 ............................. TTTGTGCCGCAGCCAGGCAGCAGACCGAGCCG 1154356 29 100.0 32 ............................. AGAGCGGCGATGGTAACTTTGAAATGAGAGGT 1154417 29 100.0 32 ............................. GCGTCCAGTGGGTCGCCGGATTGTGGACTGCT 1154478 29 100.0 32 ............................. GGGATTCCCAATTATTTATTCCATGGATGAGA 1154539 29 100.0 32 ............................. CATGGTTCTCATTGAATCCCTGGTGTATTCAG 1154600 29 100.0 32 ............................. AGGTGGACAATGATCTCGAAAAACGCAGCATG 1154661 29 100.0 32 ............................. ATCGCGCTTGGCATGGCCATGCTCATCGCATC 1154722 29 100.0 32 ............................. TCGATGCGGTTTGAATGACGCGCGCGCCGTCA 1154783 29 100.0 32 ............................. CCCGTCGCCTCAATCGGCCAGGGTCCATACTC 1154844 29 96.6 32 .......T..................... ATGAGCGGGTTACCCGTCGCGGCGGCTTTTAT 1154905 29 79.3 32 ........T...TAC.........C..T. CCCGGCGCCGGCGGGCTGAGCGGTGTGAGCCT 1154966 29 86.2 0 ...........A.A..........CT... | C [1154971] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.1 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCCATCGAGGAGGCGCTTGCGGCGGGCGGGATCTCGCCCCCGGACGCCCCCCCGGAATCCGTGCCGCCCGCCATTCCCAATGCCGAGGGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTGCGCGCCGGTGTATACATCGGCGATGTCTCCCGGCGCACGCGTGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAACCGCCGCCTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGTGGCGGGATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : GCTAGTGGCCATCCAGCCGATGTCACGACCCGGATGCCGCTAAACGCCAGTGCCGGCTTGACCGCGCCTTCCAGCCGTTCCTGCACAGAGGCAAGGACACAGCGCGTCCGGGCCGCAGGGCTGGATCAGTCCGCCAGCGCAGCGCGCGCAGCGCCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACGTCGTCGCTGATCAGGTCCGCCTTGTCGCCCAGGCCGCTGATTTCGCGCAGCTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATGTCGGCGAAGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //