Array 1 231688-232634 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQNW01000003.1 Corynebacterium bovis strain 4828 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================= ================== 231688 29 100.0 32 ............................. GGCTGGCACGGGTAACCACCGGTGAGAATGTC 231749 29 100.0 33 ............................. GCATGGTCACCCCCCCGTGAGCTCCGAGCCGCC 231811 29 100.0 32 ............................. ACAGCCCCGCTCGAGTCATGGCGGACGTACGC 231872 29 96.6 32 ............................G CGGCTGTGCATGACGTCAATCGCTGCGTTCAT 231933 29 100.0 32 ............................. ATCTGGGACGTCGCCGCCCGCAGATCATTCGT 231994 28 93.1 32 ............C.-.............. ATGGTCGGCCAGGTGTGCGGTCTTCTGCATAG T [232006] 232055 29 93.1 32 ............C...............T GCTTCGTTGAGTGTCGGTCCGGCAGGTGCCTG 232116 29 100.0 32 ............................. GTGGGCGTCCGGTCGGCACTGTCGACGACGGG 232177 29 96.6 32 ............................G CAATGGCAGCGGGTAGTGAAGTCGGGGGTTGA 232238 29 96.6 32 ......................G...... GCGTCCGAGTGGGCGCGCCTCGACTCGGATTT 232299 29 93.1 32 ............C...............G CGTTGGTGGTGTCCTTCCTTGAGGGTGTTGTG 232360 29 89.7 46 ...............A.........G..G CGGGGATGATCCGCAGGTCATCGGCGCGCTGGTCGGTGGTGTCAAC 232435 29 82.8 81 ............C.........C..C.TG CGGGGAGCACCCGCGGGGATGACCCCGGGCCGCGCCGCTCCTGGCTGGTAGGGAGGACGACCCGCTAGACTGCAGACACTG 232545 29 93.1 32 ............C...............G CGTCACGCTTGGACGACTTTGATCCGGCATGT 232606 28 93.1 0 ...........-................T | C [232621] ========== ====== ====== ====== ============================= ================================================================================= ================== 15 29 95.2 37 GTGCTCCCCGCGTGAGCGGGGATGATCCC # Left flank : GCACCGGAAGACGGGGTTGACCAGGTTCCCGGCGGCCCTTCGCGACGGGAGGCTCCGTGATCACCGTGGTGTTGACGTCTCCTCCGGAGCGGGTGCGTGGTCACCTCACGCGATGGCTCTCGGAAGTGGCGACCGGAGTGTATGTCGGCAAGGTGAGTGCCAGAGTGCGGGACGAGCTGTGGCAGATGATCCAGGTGAACATGGACGGCGGTCGGGCGGTGATGACGTACCCGACCACCATCTGCGAGCAGGGGTACGCCGTGAAGGTTCACAAACCGCAGTGGGAACCGGTTGATGTCGAGGGCCTGGTCCTGTTTCGTCGGCCGGGCCGTGACCGGACGTCGCGGACCCGCGGCGATTGGTCACGGGCCTCGCGGGAGCGCGACGGCAGGACCAGACGAGCGGATGATCTGCAGTGATGGTTGGTGCTGACGTGAGGGCGCTGATCGACATTGAATGAAATCTGGCTTCTCGTGTACTAACATCCCTGGTCAGGAAGT # Right flank : TCACCACCACCGCCCACCCACCTCCCGTCGTGTTCGCCCGTCCGCCGACCGCAGGTCTAAGGTGAATCCGTGGCCACGCGAACGACGACGAACAATGCCGCGCCCGGGTCAACCCGGCGCCGGCGGGGCTGGCGAGCGTTCCTCACGCCGGGCTGGGTCATCACCGCCGTCATCGTGGTGATGTTCGCCTACGTGGCGTTCACCGTCCTCGCGCCGTGGCAGCTGGGGAAGAACACCCGCACGCAGGAGAACAACCAGCGCCTGTCCGCCGCGATGGACGCCGACCCGGTGCCGGTCGAGGACGTCCTCCCCGCGGACGGCTCACCCGCCGGCGCGGACCGCGAGTGGACCCGCGTGACCCTCCAGGGCCGCTTCATCCCGGACGCCCAGGTGCTCCTGCGCAACCGCCCGGTGGACACGAGCCCCGCGTTCCAGGTCCTCACCGCGTTCCGCCTGGATTCGGGCGGCACGGTCCTCGTCAACCGGGGCTGGACGCCGCC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //