Array 1 102772-101662 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOVI01000021.1 Pseudomonas aeruginosa strain MZ4A NODE_21_length_102938_cov_10.7859, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 102771 28 100.0 32 ............................ AGGGGGAGGGCTTGGGTTTGCTTGTCTGCTGG 102711 28 100.0 32 ............................ CGTCTGGCTGATCAGCAGCGGTCTGCTGATCG 102651 28 100.0 32 ............................ TGCCGGTAGCAGGGCATCAACAGACCAAACAC 102591 28 100.0 32 ............................ GTCGACGTCGATGAACGCCGCGCACGGATGGA 102531 28 100.0 32 ............................ TTGCTAAGCATCCACTGTGCCGCTCCTGTAGC 102471 28 100.0 33 ............................ ACGTATCAGGCATCGTACTCGGCAAGGTGTTCT 102410 28 100.0 32 ............................ TGCGGAAGGGGCCGGGCTGGCGCTGGCACCAG 102350 28 100.0 32 ............................ TTGATGGCGTTGACCAGCTCCTGCACCTGGTC 102290 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 102229 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 102169 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 102109 28 96.4 32 .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 102049 28 96.4 32 .............T.............. TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 101989 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 101929 28 96.4 32 .............T.............. ATCAGGTACAGCACCAGGGCACCGAAGACGTT 101869 28 96.4 32 .............T.............. TCGGCGAGGCGATCGATCATGCGAATCAGCAA 101809 28 96.4 32 .............T.............. ATCGACCACGACAGTGCTTCCCTGGTCTATTC 101749 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 101689 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.3 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : TCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCCGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 168-1337 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOVI01000050.1 Pseudomonas aeruginosa strain MZ4A NODE_50_length_47737_cov_8.8747, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 168 28 100.0 32 ............................ GGTTCGGCAGCACTCAGACGGTTTCGCTCAGT 228 28 100.0 32 ............................ TGAGCCGCTGCAAGCAGAGGTAGAGGTTCAAT 288 28 100.0 32 ............................ AATATGCAGACCCCAATGCTCCCAATCATGAA 348 28 100.0 32 ............................ GCGAAGCAGCAGAGCAGGCGCGGCGTCAGGAA 408 28 100.0 32 ............................ TACGGTCGCCAGGTCGAAGCCAGTACCTGGCG 468 28 100.0 32 ............................ AGTGACCGACCCGCCTTCGGACCCGAATGACC 528 28 100.0 32 ............................ TTCTGGTGGGCGAGGGCGGCGGGGCTGAAAAG 588 28 100.0 32 ............................ TGGCCCAGGTAGGTGGCCCAGTCCTGACCCTC 648 28 100.0 32 ............................ TTGTCGGCCACGCGCAGGTTCTCCACGACGTT 708 28 100.0 33 ............................ AGGAACACGCTCGAAGTGTCCAGCACCCTTGGC 769 28 100.0 32 ............................ ATCAATCGCTTGATCCCGTCTCGCATGAATGT 829 28 100.0 32 ............................ AGTGCGGTCAGACCATTCACGCCACACTTGCT 889 28 100.0 32 ............................ ACCCTTGCGCGCAGTGCTGCGACTTCCTCCGT 949 28 100.0 32 ............................ ATGGCGTGCAGATCGTCGAGGAACGGCTGCAT 1009 28 100.0 32 ............................ TGGGCGAGATCGGCGCGTAGCCGTAAGGCGAG 1069 28 100.0 32 ............................ AGAACGAGCCACGGGTATCGGCCTTCGACTCA 1129 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 1189 28 100.0 33 ............................ TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 1250 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 1310 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11211-9862 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOVI01000050.1 Pseudomonas aeruginosa strain MZ4A NODE_50_length_47737_cov_8.8747, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11210 28 100.0 32 ............................ AAAGAGGCTGCCTAGCCAGATTGCTGTGCGTC 11150 28 100.0 32 ............................ AGCACGATCCTCGGTGGCGCGCTGGGCACTCC 11090 28 100.0 32 ............................ TTGACCAGGCCCAGCGTGCGAAGTCGAAGCCG 11030 28 100.0 32 ............................ AGCAGGCCGGTTGGCGGCAGGCCATGGCCGTC 10970 28 100.0 32 ............................ TTCTACCTGGAGAACATCATGCCTCATGAACA 10910 28 100.0 33 ............................ CAGATGCGTTGGGCCAGTTCCAGGTCGCCTCGG 10849 28 100.0 32 ............................ GTATCGACTGTGATGGATGCGACAAGCACCGC 10789 28 100.0 32 ............................ GAACAGTTCTGGCCGTTGCTCTTGAGCGTGTA 10729 28 100.0 32 ............................ AGCCGCTGCGATAAATGCGGCTGCCACCAGAT 10669 28 100.0 32 ............................ ATCGACCTGACCAAGGCCGCCCAAGTCCTGAT 10609 28 100.0 32 ............................ GTCATGTCAAAGCCCTACCGGGTTCGAGATAA 10549 28 100.0 32 ............................ AGTCTGCAAACGCCCAGGCGTACCAGTTCGAC 10489 28 100.0 32 ............................ AAGAGGTTCATGTTGAACCAGTAGTCCGGGAA 10429 28 100.0 32 ............................ TGCGGCACGCCTGGGAGTCACTGAGTACGGGC 10369 28 100.0 32 ............................ AACAACAACAGCCAGGTGCTGGCCACCACCAA 10309 28 100.0 32 ............................ AATAGCCCGTACAGTCCGGTGGGGATCGTTGA 10249 28 100.0 32 ............................ AAGCGCTGCGGGCTGTCGCGTTGCGCTGCTCG 10189 28 100.0 32 ............................ TCGCCGACCGCGTTCCCCGTGCCGGGGTGCTG 10129 28 100.0 32 ............................ AAGGACTTGGCCGGCTTGAAGAGCTACCTGGG 10069 28 100.0 32 ............................ ATCCGGCGCATGAGCGAACGCCCCTCCCAGAT 10009 28 100.0 32 ............................ GTCATCGGACGAATCGCGTCACCAACCGCCCG 9949 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 9889 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGTCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //