Array 1 76757-77638 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBL01000017.1 Salmonella enterica subsp. enterica serovar London strain BCW_2725 NODE_17_length_83892_cov_3.22268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 76757 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 76818 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 76879 29 100.0 32 ............................. CTTCCAGTTTTTTCCCTGCCTTTTGGGCGGCG 76940 29 100.0 32 ............................. TACCTGACGCTGATCCAGTCGATCGCGCTGCT 77001 29 100.0 32 ............................. ATTTTCTTTGCGCCCGTACTCAACGTGGGAGG 77062 29 96.6 32 ............................A TCGCCCCGAGGTCGTTCACGACGTCCTCGTGC 77123 29 100.0 32 ............................. CGTTACTCCAGACAATAGAGCGCCTCACCACT 77184 29 100.0 32 ............................. CATAGGGGCCGCAGAAGTTGCCACAACCACAA 77245 29 100.0 32 ............................. GGGTCAATGTTGATGCCGGGGTGTGTTGTTAC 77306 29 100.0 32 ............................. GGAACTCATGCTTTTACCTGATGCGGCGGCAC 77367 29 96.6 32 ..........T.................. CGAGGCGGCATCAAAGACGACGAAACACCATG 77428 29 100.0 32 ............................. GATTTTCCCGCGTTGGTTGTATGCCGTGCGTG 77489 29 100.0 32 ............................. CGCGTATTAAACGGGCAGATCGAGGAAACAAC 77550 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 77611 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGTGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28750-27499 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBL01000019.1 Salmonella enterica subsp. enterica serovar London strain BCW_2725 NODE_19_length_76492_cov_3.3859, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28749 29 96.6 32 ...........................T. CCAGCGGAGAGCGAGCTATACCAGGCTCAATC 28688 29 96.6 32 ...........................T. TCCGGAAAATCTACCGTTCCAGGGCGGGGCCG 28627 29 96.6 32 ...........................T. GGAACCAAGTATACGCGTAGACAGCGTCAACG 28566 29 100.0 32 ............................. GAATTGGCGTATCTGTGTCTTGCCAGACAGGG 28505 29 100.0 32 ............................. CGTAGACCACCTCTTTCGATATGTGAGTGAAG 28444 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 28383 29 100.0 32 ............................. ACATAATCCCCATGTACATAATTTATGCTCCG 28322 29 100.0 32 ............................. ATCCAGCAGAGCTACAGGAACGCCGCAAGGCC 28261 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 28200 29 100.0 32 ............................. TTAAATGCATCGCGATCCCTTGCAATTATAAC 28139 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 28078 29 100.0 33 ............................. GGCACGTTTACCGTTCCGGCTGGGGTTTATCGT 28016 29 100.0 32 ............................. GGCGGATCCACGATAATTTTGTCGTTATGTAT 27955 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 27894 29 100.0 32 ............................. GCGCTATTGTATATCGACCATAAACATCGGCT 27833 29 100.0 32 ............................. TCCCTGCTGGCCGTTCTGGAATTGCGTAGCGC 27772 29 100.0 32 ............................. CCGGAGCCTGACCAGGATTTTTCCGCCGTGTA 27711 29 100.0 32 ............................. GAATTGCAGGAGTGGTTTATCGAGTGTTTACA 27650 29 100.0 32 ............................. AATCAACGGATCTTGCTAATGTAGTTTCTGCA 27589 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27528 29 93.1 0 A...........T................ | A [27501] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCTGGTTTGCCGACAGCAATAAAAAAGCGTTGTTGGCGGAGGTTGGTGTAGGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTGCGGTTACTGGGTCTTAGCAACAAGATTTTACTGGCGGATGAGATCCATGCCTGTGATGCATGGATGTCCCGAATACTTGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATTCTGTTATCTGCGACGCTATCGCAGCAGCAGCGAGATAAGCTGGTGGCGGCATTTTCCCGTGGGGTGAGGCGTAGTGTGCAGGCGCCGTTGCTAGGCCATGACGATTATCCCTGGCTGACTCAGGTCACACAAACAGAGCTGATTTCTCAGCGGGTTGATACACGCAAAGAGGTTGAGCGTAGCGTAGATATTGGCTGGCTACATAGTGAAGAGTCGTGTCTTGAACGTATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATAC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //