Array 1 624599-623771 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066277.1 Streptococcus lutetiensis strain FDAARGOS_1018 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 624598 36 100.0 30 .................................... ATTTTGAGCTTTTATCAGTCACTACAATTC 624532 36 100.0 30 .................................... TCCTACTAGTGTGCCTAGCGGTTTCCATGG 624466 36 100.0 30 .................................... AAGGATTGGTAAATTCTGCTCGTAGTGGTG 624400 36 100.0 30 .................................... AAAGAAAAATCGTAACAACTCAAATGACAT 624334 36 100.0 30 .................................... ATGAAATGGTAGGAGCTTACGACTCTGGAA 624268 36 100.0 30 .................................... CATACTCAGAAAGAGATAGACCTACTTCAA 624202 36 100.0 30 .................................... AGACACTTGCCGAGGCTAGACACGCGCTTG 624136 36 100.0 30 .................................... GTGACGTTTTTAGTGATTGGCAACCAGCTC 624070 36 100.0 30 .................................... GAATTAAGTTGACGTCAACTGTCGCAAGTG 624004 36 100.0 30 .................................... CTCAAATGCCACAAGGTATGGAAGAATAAA 623938 36 100.0 30 .................................... GCTGACCTTACTAAATTCGACTTCGGTGTT 623872 36 100.0 30 .................................... TAACTTCTTCATCATAATCAACTACTTTGC 623806 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTGGTTTGGGGAATAAAATAATTAAGTATGGAATTATTCGGAGCTGAAGTCAGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAAATGGTCCACGAG # Right flank : TGTGGCTACTAAATATGAATACACCAAAACCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGTAATGAGTTGAGTTTTTATTACCTTTGGTTAAATAATAGCGCTTTCTGCAAAACTTGTAAAATGATTTGCGGTAGCTGATTTTAGCGATATTTATCGTGCCTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGAAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGTATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAATTACACAGCTAAAGATGGTGAAACTTACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 626430-625201 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066277.1 Streptococcus lutetiensis strain FDAARGOS_1018 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 626429 36 100.0 30 .................................... AACCAGAAATTGATTTTATTTATACAGTGT 626363 36 100.0 30 .................................... AGTTACATTACCTGAGTAGTTCATTGCACC 626297 36 100.0 29 .................................... TATTCGCAGAAAATATACAGACGTAGGAA 626232 36 100.0 30 .................................... TTATTAACCCAGCTTTGTTTCCTCTTAGGT 626166 36 100.0 30 .................................... CTATTGAACCCGTGGAATGTGTGGGGATTT 626100 36 100.0 30 .................................... CAGCTTGATAGTGATTGATGGTCATTAATT 626034 36 100.0 30 .................................... TAAAGATTAAGACCCCCTTTATAAAATGAA 625968 36 100.0 30 .................................... ATGAATCATATTACAGAAATCCAATACATG 625902 36 100.0 30 .................................... AGGTTTTAGTTTTAAAACCAAATTTCAAAT 625836 36 100.0 30 .................................... AAATCCTAACTCAGATAATCATTTAGTACT 625770 36 100.0 30 .................................... AGACGATGTTATCGTCAGACCAAACGATTT 625704 36 100.0 30 .................................... CTTCTGTCAATGGTTTACCATCAAAAGCCA 625638 36 100.0 30 .................................... TGCTAATCAAATCAACATCTGCATCGTCAA 625572 36 100.0 30 .................................... CAGTTGATGATTCGTATTTTGCTTTCATCG 625506 36 100.0 30 .................................... CAGTTGATGATTCGTATTTTGCTTTCATCG 625440 36 100.0 30 .................................... CAGTTGATGATTCGTATTTTGCTTTCATCG 625374 36 100.0 30 .................................... TTTCCGTCTTTAAGAGTATCAAGAATTTGG 625308 36 100.0 30 .................................... TTGTTTAATCCCACCAGACAACACCACTAA 625242 36 88.9 0 ....................T...AAA......... | T,AAT,C,A [625206,625208,625213,625215] ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.4 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTTCACAAAGAAGAAGGTGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGAAACTGAGGGTAAAGATATCGAGGAAGCTATGAAGAATGCACGTGAAATGCTTGAGAGTTCGTTAGCTGCGTATTTAGATGAAGGACTTGCTCTTCCAAAAGTTATGGATATGAGTGAGTTAACCGTTGATGATGGCTTCATTACTCTGATTCAAGCTGATCCTTCACCGTATTTAAAAAAGACAAAAGCTATTCGTAAAAATGTTAGGGTAGCAGAATGGTTAGTCAGATTAGCTGACTGTGAGTAGGTAAACTATTCTGAGGTTTTAACAAAAGATTTGGAGAAAAAAGTTGCAACTATAAGTTTTAAGATTGTTCAGGAACGTTGAAAAATCAAGGTTTTTAAGGTATAATAAAACTAACATTATGGAGCTGTTCGAGACTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAGATTTCGTGAGAAAAATTGGTCCACGAG # Right flank : TGTAGTAAAAATTACTTTCAATGTTTTTCAAAAGTTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //