Array 1 381-1406 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVYQ01000092.1 Neisseria meningitidis strain MRSN431200 MRSN431200_contig00092, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 381 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 447 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 513 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 579 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 645 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 711 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 777 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 843 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 909 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 975 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 1041 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA 1107 36 100.0 30 .................................... AAGCATTGACGATATTTGTGTGGCGTTGCA 1173 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA 1239 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 1305 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 1371 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : CATCAAATCATCCGCCGCGATTCGATCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 30-593 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVYQ01000093.1 Neisseria meningitidis strain MRSN431200 MRSN431200_contig00093, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 30 36 100.0 30 .................................... TGCGGAAAGCCTCCATGCTTTGCAGCACTG 96 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 162 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC 228 36 100.0 30 .................................... AGTCAATGAATCACTAAAAGCCAAGTCAGA 294 36 100.0 30 .................................... TTTTTCGATTTTTTATATTGAGCGTTTTTG 360 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 426 36 100.0 30 .................................... TGAATCGATATCGAGCCTGCCGGCGGGGGC 492 36 100.0 30 .................................... AAACCGAGTTCAACCGCCACGTCGAAGACA 558 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CCAAGATATATCAAAATTGTAGATGAAAAG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //