Array 1 479400-480525 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXF01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain BCW_2856 NODE_1_length_659753_cov_3.80403, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 479400 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 479461 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 479522 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 479583 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 479644 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 479705 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 479766 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 479827 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 479888 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 479949 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 480010 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 480071 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 480132 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 480193 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 480254 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 480315 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 480376 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 480437 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 480498 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 496783-497605 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXF01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain BCW_2856 NODE_1_length_659753_cov_3.80403, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 496783 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 496844 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 496905 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 496966 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 497027 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 497088 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 497149 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 497210 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 497271 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 497332 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 497393 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 497454 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 497515 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 497576 29 96.6 0 A............................ | A [497602] ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //