Array 1 2039021-2039507 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072020.1 Akkermansia muciniphila strain Akk2670 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2039021 31 100.0 34 ............................... CTGGCACAACGACGCCTCCCTTGTCGTCAAGGAC 2039086 31 100.0 35 ............................... CGTAATGCCCCCGTCGCTGCTCTGGGTGGTGGTCT 2039152 31 100.0 35 ............................... TTTTTATTCTTTGTGCCTGATGCAGATTCCTCCCC 2039218 31 100.0 34 ............................... CTGGGCTTGGTCAATGGATTCCAGCAGCGCTTCC 2039283 31 100.0 34 ............................... TTCAATTCCGCGATACGTGTGAGCCTTTCGTTTT 2039348 31 100.0 34 ............................... ATTTACATTTACCGTTCCGCTCGTAACGACAAAA 2039413 31 100.0 33 ............................... TATATTCGGCCCATGCTTCGGCAATGGTTTCTT 2039477 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 8 31 100.0 34 GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAACCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGAGGAAGACAGGTCAGTTGACTGCCGTTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTACTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTGCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGGCCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : CAAGGTATGTTCCATGCGACGCACAGTGAGGAATGACAGAAGAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAAACACGGGAGTTAAGTAGGGACAGGCCAGGCACGAGCTATCTTATAAAAGTCGGAGCTAAAAAGAGGGCAGATGACAGGTATCTGATATAAGTACACAAGCTATGCAGGGATGCTGCACAAGAGCTGCAAAGGGTAGGTGATAGAGAAAACGACAAGGTAAAAAATCATGATAGGATGTCCCGCATGTGTACACCTGCATATTGCATCCCCTTGTATGGCTCCATGACTGTTATTTCGCCCGAAGACCGAAAGAAAAAGAATCCGCAAATTTATCATCTCCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAGAGAAGCAAGACGACATGCTGGGTGCGGGATGTGCTCGACAACGTGTGGATTGTGATCAGGAACGAAAGAGAAGATGATTGAAAAGAAAAAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2072411-2072766 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072020.1 Akkermansia muciniphila strain Akk2670 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2072411 31 100.0 34 ............................... CGGGTCTTCGTCATCGTCCAGCCCCCGGTCCGTC 2072476 31 100.0 34 ............................... TCCTTTCCGTCGATGATAGCCTTTAATTCACCAA 2072541 31 100.0 34 ............................... TGTGTCCTTCTCATCGTCCCCCTCTCCCGTGTCC 2072606 31 100.0 34 ............................... CTGAAACAGGCGCGGGACGATAAAAACATCCCTG 2072671 31 100.0 34 ............................... ACGTTGATTTCCCGGTCTGTCAACTACGACGGGA 2072736 31 87.1 0 .........A......C............GT | ========== ====== ====== ====== =============================== ================================== ================== 6 31 97.9 34 GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Left flank : AGAGGCTGGATAGCCAGACGTCTTTATCGGGAGATGGATTGGACGCTCCTGGATGACCGCGCCCCGGAAGATTGGACGATTGGACGGGAGGTGTTGGCCAGGGTTCCGGCAACATTGTGCCGCATTGATGAGCCATGGCGCAAACGTTCCCCGTGGAGTGTATGGACGGCCTGGTGCTGGCCCAGCCGCACGGTAAGCGCCGAGAGTTACGCGGCCAGGTTTGCCGTGGTGATTACCGGCAGCCCCCGCATGCCCGATCAACCCGCCAGCGAGCGGGCCAGGGTGATGCACCTGCTGGCCGACGCCAGGGAGAGGATGCTCCGGGAGGGTGTGGCCAGGGAGGACGACGAGGCGGTGGATTGGGGTGACCTGCTGGCCGCTTGTAAGGGGGAGGCAGAGTCGATGCAGACCTCCTGCACGGAGCTGGCAGACAGACAAGTTATATAAGATACTTGTCGTAGTTCTATCAGATGTCTTGGCGCGTTACAACAGTAAACCCG # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCTTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCATCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2521041-2520673 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072020.1 Akkermansia muciniphila strain Akk2670 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 2521040 37 100.0 30 ..................................... ATCCCATGAGGCAGGGGCCTGTGCGTCATA 2520973 37 100.0 29 ..................................... TAAATTCCCTGATCCGCTCATGCTGAACA 2520907 37 100.0 29 ..................................... GAAAAGCTTTCACAGTTTGCGGGCCACAG 2520841 37 100.0 29 ..................................... AAGCAATTTTTATACGGTCAATCATCAGG 2520775 37 97.3 29 ....................................T TTCGGCGCGCTGGACAAGGGGTTCAATCG 2520709 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================== ================== 6 37 99.5 29 ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACA # Left flank : CTGTCATGTACCGGGATAAACAGCTGCCGTTGAAAGCGGCGGTAGAGGCCGTTTGCCGCAGTTTCCGCAAAGCAGTTCTTGCCGGACAATCCGGACCGTATGAACCATGGCTTATGACAACTATAAAATGGGCTGGCTAGTTGTGTTCTTTGATCTTCCCACAACCACGCCGGAAGATAAAAAAAACTATCAATATTTCCGTAAGGCTCTTTTAGAAGACGGCTATACGATGATTCAGTATAGCGTCTATGCCCGCGCGTGCGTTACTCAGGAAAGAATGGCTACCCACTCCCGCAGAATCCAGAAAATGATACCGCCTGATGGTTCTGTCCGCTGTCTTTTCGTTACGAATATCCAGTGGGATAAGATGTTCGTTTTTCATGGCAGGTCTTGTCCCCGACAGGAGGTTTCCCTGCCTCAGCAGATGCTCCTCTGGTAAAAATATCGGACGCCGTATTTTTTTATAAGTCGCTGAACATAAAAATAAGGCACAGTATCTA # Right flank : AATGCGCCTCCGGTCTGATGGCGCAGGGGATTGCTCCGCCTTTGGCCACGCAATTCCAGACGGATTTTTGTCAGTCTTCCTTTAACGGAGCGGGAGAAACAAAGCTGTGCGTCCAGAACATGGCGCCGGTTGCGGAGGTGATACCCTCCATATTAAGATAGCGGGCCAGCAGCAGGGAGGGGGAGGAGTGTCCCATCTCCTTCTGGAGAAGGTTTTGATTGCAGAAATGGGCCAGGTGGTAGGAGGCGTAGGTATGCCTCAGCACGTCCTGAACCCATCCGCTTTTTTTCAGGATGCCGGACCGGCGCCTTACTTCCCTCCATTTCTTTTCCCAGTTGGGCGGGCAGACGGAACGGGCGGGGGAACCGGCGGAAGACATCCGGCTGAGGATGGAACCCAGCACGGGAAGGATGGAAACATGGCGGCTCCCTCCCGTTTTGGTATGGGTGGGCGCCAGTGAAACCAGGCCGGATTTCAGATTGATATGCTTCCACGTCAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 4 2597403-2595153 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072020.1 Akkermansia muciniphila strain Akk2670 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2597402 33 100.0 34 ................................. TGCATGGCGATCTTCATTGCTTCCAAGCGGGAAA 2597335 33 100.0 34 ................................. ACGAACCATAGCAAATCTTCCATTGACGATTGGA 2597268 33 100.0 34 ................................. CTTTTCTAATTTGCAACGATTGCAAATTTTTTTC 2597201 33 100.0 34 ................................. TTTTTCTGCGCCTGCGCCGCCCGCTGGACTTCCA 2597134 33 100.0 34 ................................. ATCGTCTATGCCGTCTTTATAGGAGGCGGCGACT 2597067 33 100.0 34 ................................. CGTGTTACCCGAACCAAAGAATGGCTGTTATTGC 2597000 33 100.0 35 ................................. ATTTATGTTCATAATTTATTCTTGTTTGATTTCCC 2596932 33 100.0 34 ................................. AGTTGCTATTTGACACTTGCGACAGACATAATAA 2596865 33 100.0 34 ................................. CGTGTCACCCGAACCAAAGAATGGCTGTTATTGC 2596798 33 100.0 35 ................................. GTTAAACCGGCCCATGAAGGAAAAGGGGCGTTCCG 2596730 33 100.0 33 ................................. AACGCCTCGTCCATGTGGCGGATGCTGTGGTAC 2596664 33 100.0 34 ................................. CTTTGAAAGCGCGCTCTATGCGCTGCCCAGGAAA 2596597 33 100.0 34 ................................. CGGTCATCCCTCGCAGCATCATCCTGCATTTCTG 2596530 33 100.0 35 ................................. GCCGCCTCCTTCCTGTTCTTCTCCTTCCGGGTATT 2596462 33 100.0 34 ................................. CCGTTGGGCGGGTAACAATCGCAATATCCTATTA 2596395 33 100.0 35 ................................. CTTTTGCCAGTACGGAGGAATGCAAGGCCCTTCTT 2596327 33 100.0 34 ................................. AATAACTCTACACGATATTGGAGGGGTAGCTCGT 2596260 33 100.0 34 ................................. CGTTTTTCCCCTCGAAAAGTATTTACAGTTTTCA 2596193 33 100.0 34 ................................. CACATACTTGCGCCCCGCCCGGACAGCTCCAAGC 2596126 33 100.0 34 ................................. ATAAACTTTTGTTTTTTGGATGTACAGCAGCACG 2596059 33 100.0 34 ................................. TTACTCTTCCGCAAAATTGTACCAGCGCATCTAC 2595992 33 100.0 34 ................................. CGGAGAGTGGGCACGGCTAAGGCCCGTGAAATTG 2595925 33 100.0 34 ................................. TCCATTGCCGCCCTGCATGCTTCCCCGCATTCTT 2595858 33 100.0 35 ................................. TTAGTTGCCGCCAGGGCCTCTTCCGTCAGCCAGCC 2595790 33 100.0 34 ................................. AATAAACCCGTACAGTTCCAGCGTGCCGGAAGGG 2595723 33 100.0 35 ................................. CTCAGCATTGCTAATCCTGATAACGTCAACCAGAA 2595655 33 100.0 34 ................................. TCCCGGTGCTGCCCGGTTCATGGCTGCCACCCTT 2595588 33 100.0 35 ................................. ACACGTTTGCAGGGCCTGCCGGGCAATGGAATTAT 2595520 33 100.0 34 ................................. GACCTCAAAAGCGGCCAAATCCGCAACTACTGGG 2595453 33 100.0 34 ................................. CGCCGAAAACGTCCCGCAAAAACAGCTCGCAGAG 2595386 33 97.0 33 ............G.................... GACCATATCCCCCCAAGGGAATTTTAGAAAGGA 2595320 33 100.0 35 ................................. CACAGCCTCCGGGCGACCGCCGTGACCGTCCTGCG 2595252 33 100.0 34 ................................. TCCATGATGTCCCGGTCGGAAAATCCAAGGTCGC 2595185 33 93.9 0 .....................A....C...... | ========== ====== ====== ====== ================================= =================================== ================== 34 33 99.7 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCCCGGGGCGCCTCTTCTTTTGTGGAAAACAAAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGTTAGGATGTTTCCGCATCGTGCACAGGCTCTGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTACGACCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGGTAATCAGTGCCATAGACGCCCAGGA # Right flank : ATGACGAGTGCAAGCTTCGAGAAGATGCCACCCGCCGTACTCTCCAGGGAGTACGTAACTTATCTGGAAAAGAAAAAGCTCTCCGAACTTGTTTGGTCTAGAGAGCTTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAAGATGGGGTCCTGCGGTTCGGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCTTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //