Array 1 866229-865683 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJTZ01000007.1 Listeria monocytogenes strain CFSAN002285 PROKKA_contig000007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 866228 29 100.0 35 ............................. TCAAATGAAAATCCCGGCAACTAATAGCAGTCAAG 866164 29 100.0 36 ............................. TCGCCACCGCGAACCACCTCGTTGACGTCTGCATCA 866099 29 100.0 35 ............................. AAATTTTCAAACCGGGGCGTAATCACTACGCAACT 866035 29 100.0 35 ............................. TGGGAAAGAATAAGATTACCAGCTATTGCCAAAGT 865971 29 93.1 37 ..............A..C........... TCTGCTAGCGCTTTTTTCAGGTCTGTGTTAGTTTTCT 865905 29 96.6 36 ..............A.............. ATACCTTTTGCAACTTTAAGCAACCGTGAATGGAGT 865840 29 96.6 36 ..............A.............. CGCTTCGGCTCTCCGTTCAAATTTACATCTGGATAC 865775 29 86.2 35 A.............AA.....G....... AACTTTGGCAATGACTTTTATTCAAATGTAGAAGA 865711 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 95.0 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTAAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAAGGATAAGCAAGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAGCCCCACCACCATCCACCAAAACCAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCTTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCTCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTTTTGTTTTTCAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 391576-394186 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJTZ01000008.1 Listeria monocytogenes strain CFSAN002285 PROKKA_contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 391576 36 100.0 30 .................................... ACCTAATCGGCCGTGACGTGTGCTTGTGTC 391642 36 100.0 30 .................................... TTACAATGGCTTATCTTATGTCCCGTTCGA 391708 36 100.0 30 .................................... GCAAGTTAGAACATGTAAGCGATGATGTTG 391774 36 100.0 30 .................................... CGTCGTTTTTAAGCAAACTCGCTTCTACCA 391840 36 100.0 30 .................................... AATAAAAAATAAGATAAGGAGTGTTACACA 391906 36 100.0 30 .................................... TTTTTTGGCCTACAGGAATCACGGATAGTC 391972 36 100.0 30 .................................... CAAAGAAGGTGAGCGGGTGTTTATCATTTA 392038 36 100.0 30 .................................... ATACACTAGTGCGCTATAATAGCACGATTA 392104 36 100.0 30 .................................... TCGCTTACGTACTCTTTAAAATCAGAGTCT 392170 36 100.0 30 .................................... GTGTCCAAAAAACAATTAGACTTTATAACT 392236 36 100.0 30 .................................... TACAGGGGAATTACTTGGCGCAACTGATGG 392302 36 100.0 30 .................................... CATGGGATTAGCGGCAGCAATGAGCAGCGT 392368 36 100.0 30 .................................... AGAGAAATCAAAAGCAGAGATTACACAGTG 392434 36 100.0 30 .................................... GAAGAACCTTTGGACTGTTTATTTTTGCTT 392500 36 100.0 30 .................................... TCAAACACAGTATCCTGGAGCGCAGGGTGT 392566 36 100.0 30 .................................... TCTAACTCTTTTGTTATTCTTACTTCCCAT 392632 36 100.0 31 .................................... GAGTGTAGAGGGAAGCATTGCGAATTGTGGA 392699 36 100.0 30 .................................... ATTGTCTGTTGCAGTAACCTCTAAGCGTTC 392765 36 100.0 30 .................................... TAATGATTTTAAGTATATTTGCTATTTGGA 392831 36 100.0 30 .................................... TGATAATCTTTGGGAAGTCTGGATAAACGG 392897 36 100.0 30 .................................... CCGTAGAAAATTGTTTGCCTCGCCCCAAGG 392963 36 100.0 30 .................................... AAGTTTTTGCAATACTTGTGTTTAGTGTTA 393029 36 100.0 30 .................................... TTCGGTTAAAGATTCAGGGGAAAGCGGAGA 393095 36 100.0 30 .................................... GAACTCAGTTCCCGATTTATACATGCGGAA 393161 36 100.0 30 .................................... ATGCAGGATAATCCAGAGCTGTTTCCGGGG 393227 36 100.0 30 .................................... TTGTAAATTTGTCCTTCTGGTGTTTGCCAT 393293 36 100.0 30 .................................... CGTTCCATTCCAGCTCACATTCATCTAAGA 393359 36 100.0 30 .................................... GACCCTATTCCAATTACAAGCATGTGTTGA 393425 36 100.0 30 .................................... AAGCGAAAAATGTGGATTGTCCTAAATGTA 393491 36 100.0 30 .................................... TGAAGAATTAACTAGTGTGTCGGCAGCATC 393557 36 100.0 30 .................................... CGTGTTATTGCGTGGCTTGCAGGTGAACAG 393623 36 100.0 30 .................................... TTTAAACATGGTTTTCCCAGATGGTACCTG 393689 36 100.0 30 .................................... TTGTTCCTTTGCTTCGGCTTCACTGATATG 393755 36 100.0 30 .................................... GAGCTAAATGCTTTCATGTAGCCCGTTATG 393821 36 100.0 30 .................................... AAAATGCGTCAGTGGTTCGTATATGAGCAC 393887 36 100.0 30 .................................... TAGTCCACCGGGATCGTTAGCCGCACCAAC 393953 36 100.0 30 .................................... TACTTCCATTTGGGTTTAACTCCCTTCTTG 394019 36 100.0 30 .................................... CGCAACAGTTAAATCAAAACCGGATTCCTT 394085 36 100.0 30 .................................... TCCTTAGTAACAAAATTTTTAAATGTTACT 394151 36 75.0 0 .........................A.C.ATGTCTA | ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATGTCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AAGAAAAAAATATTTTCATAAATCGGGTCTTAGTAGATTTTAAAAATGACTACAAAATTTTAAAAGGGAGATTCCACAATGAAAAAAACCTCAATCATTTTTATTTTTTGCGCACTCCTGCTAACTGCTTGCTCAACCACTACAAAAGAACCCCCTAGACAAACCACCGAAGCTACCGGCACAATTGAACAAGTAGAAACGGAATCAGTTTTAATCAAAAATTTCAAAATAAAAAACGATAATAACACGCCGGAACTGAGTGTGCGCTTCCGCATCAGTGAAAAGTACCACGACGAAACGGGACACAAAATAAAACGAACCGAACTAAACAAAAATGACAACATAAAAATCATTTTAACAAAAGATTTCCCAATTCAAGAAACCTCACCAGCCCAAATAGACCCAAAATACGTACAAAAAATCATCCTGCTAAACAAATAAAACTCTCTCGTCCGCAGAGAGTTTTTTCTTTTCTCAAAAAAAACTCAAATTCCTTGCCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //