Array 1 483797-485899 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKL01000002.1 Salmonella sp. hn-h2 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 483797 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 483858 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 483919 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 483980 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 484042 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 484103 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 484164 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 484225 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 484286 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 484347 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 484408 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 484469 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 484530 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 484591 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 484652 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 484713 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 484774 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 484835 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 484896 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 484957 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 485018 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 485079 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 485140 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 485201 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 485262 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 485323 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 485384 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 485445 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 485506 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 485567 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 485628 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 485689 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 485750 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 485811 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 485872 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 503532-505513 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKL01000002.1 Salmonella sp. hn-h2 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 503532 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 503593 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 503654 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 503715 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 503776 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 503837 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 503898 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 503959 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 504020 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 504081 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 504142 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 504203 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 504264 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 504325 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 504386 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 504447 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 504508 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 504569 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 504630 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 504691 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 504752 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 504813 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 504874 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 504935 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 504996 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 505057 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 505118 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 505179 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 505240 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 505301 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 505362 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 505423 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 505484 29 100.0 0 ............................. | A [505511] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //