Array 1 4848-6397 **** Predicted by CRISPRDetect 2.4 *** >NZ_UEXE01000187.1 Bacterium endosymbiont of Bathymodiolus sp. 5 South isolate BTURTLESOX, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4848 36 100.0 30 .................................... AAATCAGATGAGCAAACATTCACTAAAAGA 4914 36 100.0 30 .................................... AAGCAAGTTGTTGGTGCACCCGATACTGGC 4980 36 100.0 30 .................................... GACTCTACCGATATCCTCCGCCATACTGTA 5046 36 100.0 30 .................................... CTACTAATAACATGCTAAACAGCAACAAAG 5112 36 100.0 28 .................................... GGGACATGCGTAATCCCCCTTCTTCCCG 5176 36 100.0 30 .................................... TGGATTTAACGAGGATGGATTAAGATGAGT 5242 36 100.0 28 .................................... GATTGTGGTTCTGCTGTGGGTAAAGACG 5306 36 100.0 30 .................................... GCATCAGTTATGGCGGCATCTGCTATAGTT 5372 36 100.0 30 .................................... TCAGGCCCATCAGAAGTATCAATAGAATAA 5438 36 100.0 30 .................................... TTTGACTGAACAGTGTCATAAAGATGACTG 5504 36 100.0 30 .................................... ACATTATGTTACCTAGACGAAATGGTATCA 5570 36 100.0 30 .................................... AGACATATGTGGACGCCATGGTTCCTGTGC 5636 36 100.0 30 .................................... TATGTTGCCCGCTATGTGATGAAAAAAGTT 5702 36 100.0 30 .................................... CTTCTTCTGGTAGCCTTGACGCTTGGCATC 5768 36 100.0 30 .................................... GGAACGCGATATGCGTAAGCCTCCTTCCTC 5834 36 100.0 30 .................................... AATGACGATTGTGCGGGCAAGTGGTGTAAA 5900 36 100.0 30 .................................... AGAATGAAAGCACCAGCGAACGCTGACCAA 5966 36 100.0 30 .................................... ACGATTGCGGGGCGAACACGCATTATTTTT 6032 36 100.0 30 .................................... CTAACTGACTGAAGAACCACAGACTTAGTT 6098 36 100.0 30 .................................... GAAGGTTCAAAACTAAAGAACATGTAAGTT 6164 36 100.0 30 .................................... GGAACGGCATCGACAGTGTACAATTAAACG 6230 36 100.0 30 .................................... GGTACTGCCCTCTCTGCGTTCGCTGGTTGA 6296 36 97.2 30 ............................T....... AGTATCGTTAGCAGCACCCGCCATCCAGTG 6362 36 97.2 0 ............................T....... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.8 30 AGTATATCAGACCAGAGAGAGGGAGGGGGCTATAAC # Left flank : GATTGCGTTTGATAACCAAAAAACTACTATGTTGAATGCCATTCAGAAATTAATTTTTAGTTTGTTAAAAGCTAGCGAATGTGGAAGTTCTGATTTCTTATTGTTACCACAACATGTTAAATAAAGATGACCGCTTTATGCGATTAATTGTATTTTTTGACTTGCCTACCAAAACTAAATATGATAAAAAAGTTTACACTGTATTTAGGCGATATCTTTTAAAGGATGGATTTATTATGTTGCAATTTTCAGTTTATTCAAGGGTCTGTAAAGGGCTAGATAGTGTAGAGTCCCATTTAAAATATCTAAGGTCAATATTACCAACTAAGGGCAATATTCGAATGTTGCAAGTCACCGAAAAACAATATGCACGTATGGAAATATTGCTTGGAACGGTTAGAAAAACGGAGAAAAATGCAGGAAAACAGTTGTTGTTATTTTGAAAAATACACACTACAAAGCCATACAAGCCTTTATATATAAGGTTTGTATGGCTTTGT # Right flank : CATACTCAATAACCACACATAGTATATCAGACCAGAGAGAGGGGTCTATAACAATAAGGGAAATCATTCTATCGCCTAAATGCAAATACAACAAGATTCTAATTGTGGCATATTCGCCATAAATTACAACCAACTAAAGCACAAATCACTATTGCCAACATTGGCACCCAAAAACCCCGAATTAACGGGGTTAGTGGGTATAAGTGTTAATTATCTAAAATTGATACTTAGCGACTAATCTGGTATATCCGTTGGCGTTGCCTTCAATTGTAACATGAGTATTTTTATTAAATAAATGCTGAGCGTTAAGCGTGCCACGACCATTGACACTTAACAATGTTTTCTTGCTCATCATGTAAGATAACTCGATGTTGGTGCTACGGCGTAATTTTTCCAGTGCTTGATTCCCAGTGTATCCATAACCCTGATTGCCAGTGGCACCAAATATGCCACCAACCCAGCTCAATGCGTCTTCAGCCGCATCTGCAGTCCAATTCCAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTATATCAGACCAGAGAGAGGGAGGGGGCTATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1-628 **** Predicted by CRISPRDetect 2.4 *** >NZ_UEXE01000251.1 Bacterium endosymbiont of Bathymodiolus sp. 5 South isolate BTURTLESOX, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... CAAAATCATCAGGGACAACAACAGGGAAAA 67 36 100.0 29 .................................... ATTTTCAGAAATTTATGAAGCGTTTGCGT 132 36 100.0 30 .................................... GCTGGAGACGAGAATCAGGAGAGACAACAC 198 36 100.0 30 .................................... AGCCATGACTTAAAAGGGAACTTCATCGGG 264 36 100.0 30 .................................... AATGGTTGGATTGATGAACAGCAGGTTGTG 330 36 100.0 30 .................................... TTCCTTCACATACTTTATTGAACATCTCAA 396 36 100.0 29 .................................... AACCAGATAAAGCAATATTACGCTTAAGC 461 36 100.0 30 .................................... AAACCAGATAAAGCAATATTACGCTTAAGC 527 36 100.0 30 .................................... CTCCCTAACGCTCTTAGAACAACCAACCAT 593 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTGTGATTTGCATTTAGGCGATAGTCGGTTACAAT # Left flank : | # Right flank : TTACCTTGTCTAAAATGCTTTAATACTGGGGTTTTATCATTTTTTCTAGTCAAAAAAATGATAATTGTTCCGGTGCTTTTTCAATAGGTTGACGTTTTTTTCCATAAAAAACTTCAATCCGACCAAATTGTTTATCAGTTATTTTGATGATTCGCACTTCGCCGTCTGCTGGAAGATGAATTTTCACACGGTTAATATGCACTTGTGCATTTTCTTCACTGCTGGAATGACGCATGTATACTGAATATTGCATCATAGTAAAACCCCCATTGAGTAAGAATTTACGAAAATAACGATAGTCTCTTTTCATCTCAACATCATCTGTCGGCAAATCAAATAAAACTATCACCCACATTGTTTGTAAACCTCCGAACATTATTTTTTTGGGTAAATTATTTTTTTGCTTTCTTTGGTGAAATTTCGTTTTAAATCTGCCATTAAATAATGCACAGACACCATTAACGGCATCTGTTTATTTTTAAATTTAACATTTTCACCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCATTTAGGCGATAGTCGGTTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1709-4179 **** Predicted by CRISPRDetect 2.4 *** >NZ_UEXE01000297.1 Bacterium endosymbiont of Bathymodiolus sp. 5 South isolate BTURTLESOX, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1709 36 97.2 30 ........................A........... TTTGAAATAACGACGAACACCTTTATACGC 1775 36 100.0 30 .................................... TCACGTGTGGCAATAGCATCATTGCGGGAA 1841 36 100.0 30 .................................... TCATGCTTGGCAAAGGAAGTAGGACGGTCA 1907 36 100.0 30 .................................... GCTTGTTTGCACCATAAGCCGAAGCGGCCG 1973 36 100.0 30 .................................... CAATATCATACTCGGGGAGAGCGTCACGAG 2039 36 100.0 30 .................................... TTGTTGTTGTGTTATGCCGTTGTTGGCACC 2105 36 100.0 29 .................................... CATTAACAGTAGTATGAACAGAATCTGTA 2170 36 100.0 30 .................................... ACGAGGGAAAAAGCAAAATTGTTCTTGGAA 2236 36 97.2 30 ..........A......................... GAACGCTCATGTCTAACAGCAGGTATCTGA 2302 36 100.0 30 .................................... TTAGTGCCAATGTAGTGGCAACACCTAATA 2368 36 100.0 30 .................................... GCACGGTCAGATAAGCCAGCATGGGGAGGA 2434 36 100.0 30 .................................... GAGCCTCAGAATGAGAAGGTTTATCCTTCA 2500 36 100.0 30 .................................... CTTTGAATCAGCATTAAAGAAACCAAGACG 2566 36 100.0 30 .................................... ATTGAACACCTAAATTACCAACATCATTGA 2632 36 100.0 29 .................................... TTATAGATCTATTTACCGATGTTATTGAG 2697 36 100.0 30 .................................... TTTACAAAGAAAATATATCAATCCTCAAAG 2763 36 100.0 30 .................................... TAGCAGTCAAAGATAAAGGTAGGCTCACTA 2829 36 100.0 30 .................................... AGGTGTGAAAGAGAGCGATTTAGAGAGAGT 2895 36 100.0 30 .................................... AGTAATGCCGTCAGGGAAATCATGGGGGGG 2961 36 100.0 29 .................................... ACTTTAGACATAACATAACTCCTTAGTGG 3026 36 100.0 30 .................................... ACATCCAAGATTCTTATCCTATTGATACTT 3092 36 100.0 30 .................................... AAAACGGGTCACGAGGAGGAACACGAACGG 3158 36 100.0 29 .................................... AATCGCTTCTAGAACAATCTTCAACACTA 3223 36 100.0 29 .................................... GTGCCAACAGGCATAAAACACAACAACAG 3288 36 100.0 30 .................................... GCAGTTCATGAATTCGACTACATCAGTAAT 3354 36 100.0 29 .................................... AAAAGGTATGTGGACACCACGAAACCTAT 3419 36 100.0 30 .................................... GAGGGTTAAAGTAAGAGTTACGATTAAGAT 3485 36 100.0 30 .................................... TACAGCAATTACAGTAGCAATGGCGGTGCA 3551 36 100.0 30 .................................... CGCAGCGGCATATTGAATCCAGCCAACAAA 3617 36 100.0 30 .................................... GCAACAACGGAGATAATAAGATGCTTTACA 3683 36 100.0 30 .................................... TTATAAACTCCTCAGCGATAGCCTCGCTTT 3749 36 100.0 30 .................................... AAACGCTCGTTTGAGTTGAAAGTACACGCA 3815 36 100.0 30 .................................... CAGACTTATTAGCACCATAAGCAGAAGCGG 3881 36 100.0 30 .................................... TCTTGAAGAACAGCCTGTTCGCCAAGGTGA 3947 36 100.0 30 .................................... GTTATTGTATGAGAGAATTAAACTAAAACA 4013 36 100.0 29 .................................... TCGTTCGCCTCCTCTTTCTCTTCTTCTGA 4078 36 100.0 30 .................................... GAGGCTCAGCAGGAACAGCGACAACTCTAT 4144 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 38 36 99.9 30 GTTGTGATTTGCATTTAGGCGATAGTCGGTTACAAT # Left flank : GGCAAATCAACCAACTTCCACTAAAATAACCCCTATTTCTTAGTCGTTTTGTTTAAAAAAATATGCTGGGTAAAAGGGGGCGCTGCCCTTTTTTAGGTCTCTCCCCTTTTTTTAAAACTCAAATCCCTGCCCACCTTGTCGCTTAGTTTTCGAATAAAACCCTCATTGCCACATGGCAAACCTTTGTGTGTATTTATTTTTAAAGTTTTATCATGCTGAACACCAACCATAGATTTTAAATAATCCTGATACTCGCTTGGCAAAACTCCAATATCATAATCCGTTACAAGACTATTGTTAACAAGCCCAGCGTGACACATTGCACTTGAATATTTATAATCAGTTGCATTCTCTACCATTTTTGCCTTAACTGGATTATTTTCAACATAAGCAAAGCCACAATACGATTCTAGCATGTCTTGGCATGAGTTTATTTTAACAGAAATTAAAATAAAAAATAAAAGGGTAGCATCCCCTTTATCTCTCAGCGCAAGACAAGA # Right flank : TAACATAACGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCATTTAGGCGATAGTCGGTTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 21619-17634 **** Predicted by CRISPRDetect 2.4 *** >NZ_UEXE01000039.1 Bacterium endosymbiont of Bathymodiolus sp. 5 South isolate BTURTLESOX, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================== ================== 21618 28 100.0 32 ............................ GAATGAGCAGGCTGATGAAAAAACATAAGCAC 21558 28 100.0 33 ............................ CGGGAGTCTTGACGCTTGGCATCTCTCTCAGTC 21497 28 100.0 32 ............................ CAGATGGCCTAACAGAACAGCATCATGCTGAA 21437 28 100.0 32 ............................ TTGAGAATAAGTGAGGTCAGCACGAACGACCA 21377 28 100.0 32 ............................ AGCGTGAGGGGGAGAGAATAAAAGAGGACCAG 21317 28 100.0 32 ............................ AAAACTGAAAGTCTCTGAATATATTATACGCA 21257 28 100.0 33 ............................ CCGTCTTGATCGTTTTGATTCTTTAAATAATAC 21196 28 100.0 32 ............................ TAAGCGATAAAGAGAATAATCTCCTTTAGAAC 21136 28 100.0 32 ............................ ATTGCGGAGAATATGGCGATCTTACTCGTCGT 21076 28 100.0 32 ............................ TCTTAAGATTCGCTTCTTCCATTGCGGAGAAT 21016 28 100.0 32 ............................ TGATTATTCTAAGTCCTATGGTGATGCGGCTT 20956 28 100.0 32 ............................ ATTGATAACTCGGGTTATCAAACGAGGTAGGG 20896 28 100.0 32 ............................ CCATGGACTTTTTGTGGTATAATAAAATTCTT 20836 28 100.0 33 ............................ CTGAGTTAATGGAGTCTATTATTGCTACTCGTC 20775 28 100.0 32 ............................ ATACGATTTAGAATAATCAGGAGTTTGAGCAA 20715 28 100.0 32 ............................ CAACAGATTTTCGGCAGGCTTTTTGTTTTTAC 20655 28 100.0 32 ............................ ATTTGAGTGGAAAGAGCATCACTAACTGAGTA 20595 28 100.0 33 ............................ TGTTGTTGTTCCTTCTGATTTTGAATCTCAACT 20534 28 100.0 32 ............................ GTACATATAGCCTATTAATTCCGCTTTGCCGA 20474 28 100.0 32 ............................ TTCAGAGCCGACTTTTATTTTTGATTGTTACT 20414 28 100.0 32 ............................ TAAAATATATTCAATTTATAATCGTCCTACTT 20354 28 100.0 32 ............................ GTCAATGACGGTCCTGATTCTCAATCTGATTA 20294 28 100.0 32 ............................ AGTGTATCGGTTGTCGTCTTGAATATTCGCGT 20234 28 100.0 33 ............................ CATTAAGTCAGGATTAAGCTTCTCAAACAATTT 20173 28 100.0 32 ............................ CCGCATCTGACAAAGCAACAACTAGTGGCTTT 20113 28 100.0 32 ............................ AACCCCTTCACATTCTTGGAAGGATAGAAAAG 20053 28 100.0 32 ............................ AAGACGATAAAGAGAATAATCACCCTTCGAGC 19993 28 100.0 32 ............................ TGTTAACTGAATTGCGTCAATATGTTGATACG 19933 28 100.0 32 ............................ GTGTTTTTTAGCACCAACACGGATACGATAAA 19873 28 100.0 33 ............................ TTGTCCCAGCTCATTGGCACAAGCACACCGCCA 19812 28 100.0 33 ............................ TAACAACAACGGAAGAGCTAAACATGCTGTTTT 19751 28 100.0 32 ............................ TCTTTGCCCGCGATGCTTGTGTATCTCGCTAC 19691 28 100.0 32 ............................ TTATAGTGGTGTAGCAATCAAGTTGCTTGGGT 19631 28 100.0 32 ............................ TGAAATACTAGCGACTTTGGGCTTATAACTTG 19571 28 100.0 32 ............................ AATCTTAGGCACTTGAAACTAAGCCCTAAAGT 19511 28 100.0 32 ............................ CTTCTCCCTTCTCCCTTCTCCCTTATAGCCAG 19451 28 100.0 33 ............................ TAGCATCACAAAGAAAACCAAGCAATACGCCTA 19390 28 100.0 32 ............................ GATTAAGGTTAAAAATGGTCTTGTTGCCACTA 19330 28 100.0 32 ............................ TTCCCATTACAAAGCCTAATACCGGTAAATCC 19270 28 100.0 32 ............................ AATGCTAAAAAAACTAAAGACTGCACTCAATT 19210 28 100.0 32 ............................ TGCGCTATAAGATCTAACTCTCTGTTAGACTT 19150 28 100.0 32 ............................ TAGCGGGTGTTTTCTTGCTAGTAGACTATTAT 19090 28 100.0 32 ............................ ACAACTAGCCCTATCCGACGACAGTCGTCAAG 19030 28 100.0 32 ............................ ACTGGCATAATTATGCCGAATATTCACTTTAC 18970 28 100.0 32 ............................ AGATTTAGACTTTTTAAGGAGCAAACGATCGG 18910 28 100.0 32 ............................ ACTGGTGGCTGGTTTACATTAGTAAAGACTTG 18850 28 100.0 32 ............................ TCACTGGGATCAGACTCTAAAATCCCAATCGA 18790 28 100.0 32 ............................ GAATAAAAAAACATGAAAAAAAATAAACATTC 18730 28 100.0 32 ............................ ACACGCAATTGAAGTTTCGGCTGATATTGTTA 18670 28 100.0 32 ............................ CTTGGATCGAGACATAGGATTTTGTTCATTCA 18610 28 100.0 32 ............................ AATGCTGGTGGCTCTTTAGATGCTTGGCATTT 18550 28 100.0 32 ............................ ATAATCGGATAAATCGGAGTCGTCATCCTACC 18490 28 100.0 32 ............................ ATTATGGGATAGATAGGAGTGGTCATCCTACC 18430 28 100.0 32 ............................ TCTAGATTTGGATTGTATTGTTTCTGCCCTTC 18370 28 100.0 32 ............................ AAGCGAAATTTGTTCCAAGTGGATTGAGCGCC 18310 28 100.0 32 ............................ AACATTGATAACAATTTGGTTCTTAACATGCG 18250 28 100.0 32 ............................ CACGCAAGCTTTGGGCTTCATATGATTTTGGT 18190 28 100.0 32 ............................ GTTGACACCGAATCGGCCGCCAACCACTAACC 18130 28 100.0 32 ............................ GCATTGAATAAATCTCTGATTAAATCAATTTT 18070 28 100.0 46 ............................ TATAAAGGATAAAGGATAAAGGATAAAGGATAAAGGATAAAGGATA 17996 28 100.0 32 ............................ AGTCTAAAGCATCGCTGAAGAAATCAGCCTTT 17936 28 100.0 32 ............................ TACTAGCAAAAATAGACACAGTCCTTGCAAAT 17876 28 100.0 32 ............................ ATAGCAAAAAAACAAGACAAGAACAAAAAACA 17816 28 100.0 32 ............................ CATCCCTCTATCTGGTGTGGTATAATTGAACT 17756 28 96.4 26 ...T........................ TGTTTTAAATACTCAGCTCGAGCTCG 17702 28 89.3 13 ........................TTT. GTTTCTCCGTTCT Deletion [17662] 17661 28 96.4 0 ...............A............ | ========== ====== ====== ====== ============================ ============================================== ================== 67 28 99.7 32 GTTCACCACCACATAGGTGGCTTAGAAA # Left flank : AAAGCCAGCAGCTGGGATTAAGTAAATCAATAATCGC # Right flank : ACAATCACTGCAAATGCTGAACTGTAATGGTTCAACAAACTGTAATGGTCTAACAATCTTGGACACATTTATAGCCTTATAATACAAAATATAAGGAGGTCAATAATGACAAATACAACACAAAGAAAAGAACGAATAAACTTTACAATTGAACAAAAACTGGACTATGCCAAACTTATGGTCAACGAGAACTACACCAACAAAAAGATTATGGCAATCTTAGGCGCTGGACCTTCGGCAGTAACCAAGTAGAAAAGACAATACCTAGCAGAGATAAATGGGCAAACACCTGAATCAGGTAAAGCCATGACACCCGAACAACAAGAAATCCAGTTACTCAAGAAACAACTTTGGCGTGCTAATAGAGACAATGAAATCTTAAAAAAGGCCACAGCCTTGTTCGCATCGGAGAGTCAAAACGCATGATGATTACCAAAATGAACAAGACTTGCAAACAATACAAAACCAAGGAGTTGTGCCAACTACTAAAACTTAGTCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCACCACATAGGTGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTACCGCATAGGTAGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3372-3702 **** Predicted by CRISPRDetect 2.4 *** >NZ_UEXE01000384.1 Bacterium endosymbiont of Bathymodiolus sp. 5 South isolate BTURTLESOX, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================ ================== 3372 31 93.5 44 ..T.................T.......... GCACCTGCGCTATGAAACATCGCTTGCATATTCGTCACTTTGCT 3447 31 100.0 44 ............................... ACATTGGCGTCCCAAAACATCCCATGTGCATTAGTCACTTTACT 3522 31 100.0 44 ............................... GCAGTTGCTCTATAAAACATTCCAGATATATCGCTCGCCTTACC 3597 31 96.8 44 ..........T.................... ATGGTTGCGTTATAAAACATATAAGATATATCAGTTACCTTGCT 3672 31 90.3 0 ............A.....G.....A...... | ========== ====== ====== ====== =============================== ============================================ ================== 5 31 96.1 44 AACATCCCAACTGCCAATATCTTGGTTAAAG # Left flank : AATAAGTCGCTAAGGTTAATGGTGTCTGCGTTAGATCTTGTTGTTGTATTGCCTAGCGTGAAGTCAGTAATGGCATCATTGCCTGCGTTTTTAAAACCGTAATCAAAGATATCTCTACCACCTGCACCAGTTAAAGTATCATTGCCTGCACCACCGATCAAGATATCATTTTTGGCGCTACCAGTCAGTGTATCGTTACCACCTAAGCCGTGTAGTGTGGTTTTTGTGGCAGTTGTGTGAAGTGTATTAGCGTTATTATTGCCCTTTATCGTTTTGCTGCCATCAAAATTGCCAGCATTAATAGTCCAGTGATAGGTGTCTATTAAATATTGTCTGGCAGTGGCATCGGTGTAGTTTGCGATACTCCAAGCAACATTACTTCCGATAGCGCTCTCACCAGCAGCGGTATCAAGCTTTGCCCAGCCACGCAAAGTGCTATCCATATTATTTAGAGTCATTGCACTGGCATTAAACATACCCGTTGCATTTTTTAAACTCGA # Right flank : GGCAGTTGCACTATAAAATGCTTTGTGTGCACCACTTACATGAGACACATCCCAATGGCTTAAATCCACATCAGAGCCTTTACCATCAATATCAACCGACTCTTTTAAATTGCTAATTTTGGTTGTATTTTTAGCGATGGCAGTATTAGTGTTACCAGTAACATCTGTAAAGGCGTTTGCTGCAACCGTAATGGCAACATTAGAATGCTTTCCACCTAGGTTTGGGGTTATCATAACGGTGTATTGAGTTTCACTGACTTTGGTAAATGAGCCCAAATTGATAGTGCCATTTGTAATGCCAATATCATCCACGGTAAATGACCCATCTTTAATGGCTGCACTAAAATTAAATGTGATTGTATTGGCAGCAGTATTTGCACCACCACTGCCTGTAATTATTAGGGTTGGTTTAATACCCTCAAGTACTAAGTTGCCATTAGCAATCAAACTGGTCAACAAATCAATTTTATAGGCAATATTTTTTAAAATAATGGTTACCG # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACATCCCAACTGCCAATATCTTGGTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //