Array 1 232860-230578 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032057.1 Prevotella denticola strain KCOM 1525 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 232859 47 74.5 30 C..C....G.T...GTGG..A.A.......A.........A...... GGACAGCTTCGTGGAAAGGCAGGTTGTCAG T,G [232840,232847] 232780 47 100.0 30 ............................................... ACAGGTCAGCGTGAGTATATTCCTCTTTCT 232703 47 100.0 31 ............................................... GCAGTCTTGTATTCATTGTAACGGACCTGCC 232625 47 100.0 30 ............................................... TAAAGGAACAATCGAACCAATACGATTACC 232548 47 100.0 30 ............................................... ATGCCGGAGAATATGTAGTCAGACCGTTGC 232471 47 100.0 30 ............................................... TTGAAACTGAAAGAATCATCGCAAAAACCG 232394 47 100.0 30 ............................................... GTCTTCGCAGCGCAGCTCTGCGAGCTGGCA 232317 47 100.0 30 ............................................... TTCTTCACATTAGGAAAAACATGAGACGGC 232240 47 100.0 29 ............................................... TCTTCGCAGCGCAGCTCTGCGAGCTGGCA 232164 47 100.0 30 ............................................... AAGAGTATCAATAACATCACTTTCACGAAA 232087 47 100.0 30 ............................................... TTAAACTGTTGGTAATGATTTTTATCCGCC 232010 47 100.0 29 ............................................... CAGCAGCAGCAAGAGATTCGACACTGTAA 231934 47 100.0 30 ............................................... AGGACTAATTTGCAAGAATTTCGTTAATTC 231857 47 100.0 30 ............................................... TGTAGCCGTTATCTTTGTACACTCGTATGT 231780 47 100.0 30 ............................................... AAGCGAGAAATCATATACAACTGACAATCA 231703 47 100.0 30 ............................................... AAGCACCGGTGAAAGGGTGCTTACTACTAC 231626 47 100.0 30 ............................................... TATCGTATTACTCATTGTTTCCCCACAACT 231549 47 100.0 31 ............................................... GGCGGAGAGGTTGACAAACAATGGGCGTTAA 231471 47 100.0 30 ............................................... AAAAACAAAAGAACAGGCAAGTAAAAAACT 231394 47 100.0 30 ............................................... TAATGCGTACGTATATATTCGTGAATGCGA 231317 47 100.0 30 ............................................... GCCGTAGTGGACAATGCACCGATAATGGCA 231240 47 100.0 30 ............................................... TTGTGCATCATCTCCTTGTTCCAGGCACGA 231163 47 100.0 29 ............................................... TACCGATGCCTCCCATGTTGTCTAACGAC 231087 47 100.0 30 ............................................... AAACTGTCAGCAGTAGACAAACGAGCCATG 231010 47 100.0 31 ............................................... AGTAAATGATAATGAGGTCTTTTCGTCCTAT 230932 47 100.0 29 ............................................... TGCTAAAATGCATATCGTATAAAACACGG 230856 47 100.0 31 ............................................... CCAATACGAGAAACTTTTTCAGCAGAATCAA 230778 47 100.0 30 ............................................... CCCACGAAGGAGCTGTACTGCGTCCTTTAC 230701 47 100.0 30 ............................................... AAAACCTTTCCAAAATCTGAAAACTGTTCA 230624 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 30 47 99.2 30 GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Left flank : TAGGATAGTGACTGGATTGAACCGGCCTTTCCTGCAGATGTGCTGATGCCCAGCACTTATGGAGTTGCCGGCAGACACCAGGCGTGTTGGCGGCCCGCACCATGCCATATATTGCCGGGAGGGGAGCCAACTTGCAGCTGGCGAAGAGCTGTGCCGGCAGAACTTATTTCATCAGGGGGATTACTTTTCCGAAGACAATGCGGAATGGTCTGTTCAAAAGAGATTGCACAGGGGGATCATACTGTTTGAGTTTTATCGGACAGCATCCAATAAACATAAATGCAGGAAACGGAGATGATTTATGGATTCGGTAAACGGTCATCCCTTCGCAGCAGGCCTATACGTTCTACGCAGCAGCCAACTACGCATTCAACTGAAAGCCAGGAATAAAGCTGTAAGGCAGCAGGCAAGACCGACCAAAAGTCAAAACACGGGTTTAAGTTTACAAAGTCGTCCGTTTGGACATTCTTGCGGATTTAAAGATAACCAGAAACCATGCG # Right flank : TGGAAATAAGTATCGCTCTGATTTTCAGTTAGTAATATTGTTTTGGTGCAAAATAAAAACTGCAATCTAAAAGAGTCCTATTGGTATTGATAGGACTCTTTTTCTTTTAGAATAATTCAAGTTGCTGCCCAGGAGCGTTGGGTGTTTGTGCCTGTGTCCCACTAAAAAGTTCTATTTCTCCAAACTGCTTATCAGTAATAACCATAATGCAAATATTTCCAGAATTAGGCATAAAAGACTTTACTCGCTTCACATGTACATCCGCATTCTCTCTACTTGCACAATGACGAACATAGATTGATAATTGAAACATAGTAAATCCATCTTTCATCAAATCTTTCCGGAAAATAGTATAAGCACGCTTTTCCTTGTTTGTATTAGTTGGAAGATCAAAAAAGACCATCACCCACATAACCCTATATTCGCTAAGTCGTTGCATCAAAGAAAAGAAGGATAAGAAATTTCACGAGCTTCCCCATTATAGCACTTCGCAAGACTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 321201-321458 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032057.1 Prevotella denticola strain KCOM 1525 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 321201 37 100.0 39 ..................................... AACAATCCCCATGACGGTGTACACGTTCGCCTTCAGAAC 321277 37 100.0 36 ..................................... TTGTTTGTAAAAGTCGTTAAACGACTTTATAAGTTT 321350 37 97.3 35 ...............T..................... TCCCAAAGCCCTTGCGGAGCTGTCTATAAACCGTC 321422 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 4 37 99.3 37 CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC # Left flank : TGTTCACAGCTACATATATCAGTGAAAGGAAAAGGTGCTTACTTAGACTTCAAGTAGGCCTCAGCTGCAGTGCAGGTAGGCGTTGGTTACAGTGCAAGTAGGCGTTAATTGGCGCACAGGTAGCGGCCTGTATAATTCAGCATGGTATTCTCAATGTATTTTATATACGTCCTAAGCTCTGGAAACAGAGCCTGATGCAGTAGTAATGTAAATATATTTCCGGCACGCTACATTCTTTTCAGATTTTACAGGTCAGGATCATACGGAAAAAGAGGGGGGATACCTCAGAAGACAGAGAAGAGAAGGGGGCTGATGGCAATCGACAGGTAAACGGCAGAAATTCCAACCAAGACCTGTACAGAATATGATTTTCTCTCACTGTGTTTTCCTGCATTTTTAATCACTGATCAAATTGTTTTTTTGTTTTTTTATCAGAAAATAAAAGTTTTTCTGTATCTTTGTATCGAAAAGCCTAAACACCATGCATCGATTTGCGTTAT # Right flank : CTTTGCAAGAATTCGCTTTGCGTCCTCAACCTTCACTCAATATTAGAACAAGGATTCGGAAGAAGAGCCTTTTGGGGCAAAAGAATTATGATTTATAAATTAAAAGTAGTACCTTTGCCACAACATTTGATTTATAAAACTAATTTGTAGTATGGTTAAAATCACTTTCCCAGACGGCTCTGTTCGTGAATACGAACAGGGTGTGACTGGTTATCAAATCGCCGAGAGTATTTCGCCGGCTCTCGCCCGTGACGTTGTATCTTGCGGTGTCAATGGCGTAACGACAGAACTGAACCGTCCCATCAATGGAGATGCGACCATCGCACTTTACAAGTTCGATGACGAAGAAGGCAAGCACACTTTCTGGCACACCTCTGCCCATCTGCTTGCCGAGGCATTGCAGGAACTCTATCCGGGCATTCAGTTCGGCTTCGGCCCGGCAGTGGAGAACGGCTTTTTCTATGATGTGATGCCGGCTGCGGGGCAGACTATCTCGGAGA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAATGAGTATCTTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //