Array 1 1-1069 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNZA01000058.1 Deinococcus reticulitermitis strain CGMCC 1.10218, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 1 36 100.0 37 .................................... ACAGCAGCAGGGCAGCCAGGGCGTCGCGCAGGAGGGC 74 36 100.0 40 .................................... TACCCGACGCACACGGCCGTAAACGCGCTCGTCTCGTCGC 150 36 100.0 36 .................................... AAGAACTCCAGGCCGCAGGCGAGAGTGCGGAGGCGG 222 36 100.0 36 .................................... CTCGAGGTGCGGGAGGGAGTCGGCCAGCGCGCGCAG 294 36 100.0 37 .................................... AGGCGGTCGATCACGAACTTGGCGCGGCCCGCGCGGT 367 36 97.2 37 ..............G..................... GCGAGTAACGCACGTTGTTCCACTCCTGCTTGGGCTG 440 36 100.0 36 .................................... CATAGAAAAAGCCCCGCTTCGGGCACGGGGCTTAGC 512 36 100.0 35 .................................... ATCGTTTCAACAACCCTAATTGTTACCTTAAACAT 583 36 97.2 36 C................................... CAGAACTGCCAAGCGTCCCCGGCATACCATTCCATG 655 36 100.0 52 .................................... GCCTTCTCGCTGCGCCTTCTGTGGCGCGTCTGCTTGTCGACCAGCTCTGCCG 743 36 100.0 36 .................................... TGGCGCTGGAGGTAGTCGATCCGCCGAGCGAACTGG 815 36 97.2 32 ................T................... TGCGGCTTAGCCGCGAACGACAGCTCGCCGAG 883 36 100.0 40 .................................... ACCCGGAAGTCCAGTTGGTACTCCGTCGTTTCCACATCCG 959 36 100.0 39 .................................... CAAACACATCACCATAATATCTACCGTACATCATTTCTT 1034 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================== ================== 15 36 99.4 38 GTCTCAGAGCAGGATTCCCCGATAGGGGATTGAAAC # Left flank : | # Right flank : CG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGAGCAGGATTCCCCGATAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 1 2080-1378 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNZA01000053.1 Deinococcus reticulitermitis strain CGMCC 1.10218, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 2079 36 100.0 37 .................................... TCGCCAGGGCCGTACTCGGTGACGCGCCGGTAGGTGT 2006 36 100.0 35 .................................... CAGAGGAAGACCACCGTCTCGTGACCCGAGCGCGT 1935 36 100.0 38 .................................... GGGGTCTCGCGCTCCTGCCAGCGGCTTCCGAGCTTGCT 1861 36 100.0 35 .................................... CTCAGTTCGAGCGTCTCGGTATCGCCCAGGTACTT 1790 36 100.0 38 .................................... CTTAGAATGTATATAAACACACACATCACCTACTAGAT 1716 36 100.0 47 .................................... TGCCGAGCCGCACCACTCATGCGAACCTGACGAGCACTGAGGCCCAG 1633 36 100.0 37 .................................... GTGCGCCGGACCATCAGCCGCCCGTTCACCTCGGCGG 1560 36 100.0 38 .................................... ACGTTGTTAAATCCGGCACGGTTCGTCCATGTCAGGGC 1486 36 100.0 38 .................................... GATCACACCACGATATTGCTCTGCTGATTCGTGCCGAG 1412 35 72.2 0 ...C.......CC..-......C........TTTCA | ========== ====== ====== ====== ==================================== =============================================== ================== 10 36 97.2 38 GTCTCAGAGCAGGATTCCCCGATAGGGGATTGAAAC # Left flank : | # Right flank : TTCAGAAGCCCACGGTCAAGGGCAGCTCCAGCTCGGGCTGTGGGCCGAGGGCGCGGTAGCCCGTCGGGGCGATCTGGGCGAGGAGCAGGGCGTCCTCCTCGGGCAGACAGACCCGCTGAAGGTCGTGCCAGAGGCCCTCCAGCTCGCGGGGGGTGAGCTGGACCCGAAACACGCTTTTCTGGACCCGGACACCGTAGTGGGCCAGCAGGCGCGTGATGCGGCGGCGCCTGCGGTCGCTGGGCGTGTCGAAGGCCACCAGAATGTCCCGGCGCGGCGCGGTCATGGGCGCACGGGGGGCTGCCAGCAGGCGCAGGCGTCTCCCTGCCCGGCGGCCTGGACGGCGCCCACCTGCCGGCGCAATGCCACGCCGATGCCCCAGCGGTGGATGCGGTCATTGAGCGCCGCCGTGACCGTGAGGCAGCCGGCCTGACCGAGCCGGACCTCTTCGGCGCTGACCTCGAAGCCGTCGCGCGGCAACTGCCCGGAGCGCAGCAGGCCCA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGAGCAGGATTCCCCGATAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : NA // Array 1 217-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNZA01000040.1 Deinococcus reticulitermitis strain CGMCC 1.10218, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 216 37 97.3 36 A.................................... CATGAGCCACTCCCGCTCCAGTTGGTCAATGCGCCT 143 37 100.0 36 ..................................... ACAGCAGCAGGGCAGCCAGGGCGTCGCGCAGGAGGG 70 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 99.1 36 CGTCTCAGAGCAGGATTCCCCGATAGGGGATTGAAAC # Left flank : TAGCAGCTCAGATCCCAGTCCTTGACCTCCAGAATCAGCGCCCCGCGCGTGGGATGCAGCGCCACCACATCGGGGCGCGTGCCATTGAGAAACGGCTGCACGAACACTTCCCACTGCGGCCCCAGCTCGCGCTCCAGGTACGCCGCCAGGTGGGCCTCGCCCGGCGTCAGGGGCGTGGGCAGCTGATGCAGTTGGGTCCAGCCAGGAAGCAGAGTCGCCATACCCAGATATGGCCCCCGCGCGCCGAATCCGGAACTAGGCACAATGGCCGAGCTACGGAACGAAAATAAAGATTATACAGATGAGAGCCGCCAAGCAGCCTGGAGCCGGCAGAAACCTCTATTCACTCGGCACGTTTTCTCATTTTCGTTCCGCGAGCGTGCTGGACGAATGATTTTGGGCAAAATCTTCTCATCTGGCGCAGAAGCCGTGCATATGGATGACAGGGCGCGCGGAGGTGTGGTAAAAACGGCGTGTGGGCCGAGGTCCGCAAACGGTAG # Right flank : CTACCCGACGCACACGGCCGTAAACGCGCTCGTC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCTCAGAGCAGGATTCCCCGATAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : NA //