Array 1 268885-269392 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPQ010000007.1 Pseudomonas cichorii strain LCYJ09 Scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 268885 28 96.4 32 .................T.......... TCGGTCATGATCCCCGAAGCGACGTAGTTGAT 268945 28 96.4 32 .................T.......... AAGCGCTTGGGGACCGCATTCAAGGCCATGGC 269005 28 96.4 32 .................T.......... GCCGCAAGCTCGCCGCGCTGGCCAGCCTCTTC 269065 28 96.4 32 .................T.......... CGGATGCGCTGACAGAAACCCTTGAACTCATC 269125 28 100.0 32 ............................ CGCAGATTCAACGCCCTACCCGTTCAGCGAGC 269185 28 100.0 32 ............................ CACCAGCGGCGGTCCTGGTCTTCAAGGGGTAT 269245 28 100.0 32 ............................ TGCTGGCCGGTAAGCATGCTCGGGCGTGTGAG 269305 28 100.0 32 ............................ ATCTTGAAAGTCCATGCCGAATGTGTCGTCGG 269365 28 71.4 0 ...........CA.......T.C.ATTC | ========== ====== ====== ====== ============================ ================================ ================== 9 28 95.2 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACCTTGTTGACCAATGATATGCGCATCCCTATACTTCGCCGCCATTGAGCCCTGATGGCGGAATTGGTAGACGCGGCGGATTCAAAATCCGTTTTCGAAAGGAGTGGGAGTTCGAGTCTCCCTCGGGGCACCAAACAGCAAGACACCCAAGCGGTTGCAGAGCTTGGGTTTAAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGCCTGGGTTTTGGTGATTATCCGGCCTGATTGCCGGGCCTGCGAATTCATTCGCGAGGCGGTGTTCCAGACAATACATATCCTTTGAATGTACCGGCCTATCGCGACTGAAGTCGCTCCTACAGGTCCGGCGCCAAACCACGCCTTAACGCACCCTCTTTTCGACCCTCTTTTTTCAGACTCCGTCGCCCCCCCTTTAAAATCAATAACTTACGAAAACCACAAAAAAGAGGGTAAAACGGCCTCAGGTAGGTGGTTTCTCTTTAAAAACGGAGAGTTATTAGGCAAGGTGTCTA # Right flank : CCACTTCACAACTTTCAAATCCTACGTTCAGCCCACACTCGACCTACAACCACTTGCTCCTGATTACCCTACCCAAGCTGAACTTCCTCATTTAACCAACCCGGCCCTCAGACTACGCTTCCTGCCGTTCGCTACCAATTCAGCGACCGGGTTTGGCGACCCGACAAAGCTAAATCTCTCCCCATCGTGATGCCGGCGCTTTATCCTGTCGGCTCATCGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGCCTGCCGGGCTTGGAGATGGCTACCGGTTCGCCAACCCACACACAACTGCCACCCATTGTTTGGCGACAATTCGGGCAGTTCCATCAGCCATATCCGATGAATGAAAACCATGCAAAATTTCAGCAACAACCTTCCCTGCACATCCTCCTTCCAAGCCACCCTCTTCCTGCGCCACAGCCGCATGCTCCGCGCCATCTTCACCGAATCCCAAGCCTGGTTCTGTCTCTCAGACCTTGCTCGCCTGATG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : CTTCACTGCCGTGTAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 99032-99839 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPQ010000015.1 Pseudomonas cichorii strain LCYJ09 Scaffold15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 99032 28 100.0 32 ............................ GAAACGGCAAAGGGTCTTCCCATGAAGTACAG 99092 28 100.0 32 ............................ CGCTCCAGCTCATTTTTCGCGCTGGCAAGCTC 99152 28 100.0 32 ............................ GCGATAGTCACGGAGCGGCGAGCGGTTCCAGT 99212 28 100.0 32 ............................ CCGATCACGGAGCCAAGGAAATGGCCGAAGGG 99272 28 100.0 32 ............................ TGGAAAAGCCTGCCCACGGATTTCTCCCGGGC 99332 28 100.0 32 ............................ TGGGGCTGGCGTCTGGACCAGGGGGAGCGACA 99392 28 100.0 32 ............................ ATTGCCCGCGAACGAGAATTTCGCCGCATCCA 99452 28 100.0 32 ............................ AGCGAGCAATGCAGCGGTGTAAGCAGGCGAAT 99512 28 100.0 32 ............................ ACTCCGGCCTTGTGATGTTGCGCACCAGAAAC 99572 28 100.0 32 ............................ ATCATGGCGTCAGACATAAAAACGCCCGCCTC 99632 28 100.0 32 ............................ CTTGCGAGGACAGGTTTTTGCGCTCCTGATGC 99692 28 96.4 31 ............G............... CTACGGGCGTTAAGACCCGGATAAATCGCAC 99751 28 89.3 31 ...........C.C.......C...... GATCACTTGAGCATTGAGCAAAGCACTGAGC C [99777] 99811 28 89.3 0 ........T......A........A... | A [99823] ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.2 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : AAGGTGGCCAGAGCATCAACCGCTTAAATGATGGGTTTCAGGGTAGTAGAGAGTGGGGGTGTTTGCTGCTGAGAGAGCCGACTGATTGGGTGGGATTTATCCGCGAGACGTCATTTCAGACGATGCATTTTTGAGAGCTGAGTGATTCATCCCGGGCACACACAACCTTGTGGGAGGGGCCTTGGCCGCGACATCCTTCAGACAAAATATGTCAGGAAATGGAGCTTTTCCAAGCCGTCATGTCGCAATTTCCGGTTTCTAGCGACATGTTATGAGGTCATGTCGCTGGCGACGACATATCAAAAAGTACGGCGCTGTCTTGCTGCGGGTGAGCACCTGTATACGGCGGACAGGAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAAAGCTCGATAAAAAAAGGGTTAAAACGGCTGTTGGCGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGCAGAGTGTCTA # Right flank : AAACAAAGCCCTTGTAGCTAGCTCACCTACAAGGGCTTCAATCCATTGCCAAAAGAACATCAAAACCAGGGAACAGTAGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCATCCTGGGCGCTGCTCTGTATCGGCTCATGCCGGATGAACAGCAGGAACGTCTGACCATTGGTACGGCTGCGCATCTGGACGAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATACGTTCGCGGGCTTGTTCCTCCGTTAGGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACCTGCACGCGGCTGACGCGCCGATGCTGTGCGTCAGTGGGGATCGGGCTCAGTTCGCCTACTCGCACATGGTCGCGCATGCCCGTCAGCCAGCTCTGGGCCATCAGGGCATCCAGCGCTTGCGCACTGCCGTGCAAGCGCAGGCGGTCGCCCAGGCCGGTAGCCCTGCCGCTGATAGCGGGGAAGCTGAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 109431-108502 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPQ010000015.1 Pseudomonas cichorii strain LCYJ09 Scaffold15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 109430 28 100.0 32 ............................ GATTTGGAATGAACTGGCGAATATCTGCGTTT 109370 28 100.0 32 ............................ AAGCGCAAGTCCAGTGTTCTGTATGGAGCGTT 109310 28 100.0 32 ............................ TCACGCTGCTGAGCACCGAGTTCACCGGGTAC 109250 28 100.0 32 ............................ TTACCGGCTGATATGGCCGAACACGTCAAGTT 109190 28 100.0 32 ............................ TTCTCTCCCTGCTGCGCACTCCCCCCCTTACC 109130 28 100.0 33 ............................ GGGAGGAGGGTCAAATTTCTTTCCAGGGGTTGA 109069 28 100.0 32 ............................ ATGTTGTCGACGCTGGCGGTGGCCAGCTCGGC 109009 28 100.0 32 ............................ AGTGCCGGTAACTTGACTTGAACCGCATCCTG 108949 28 100.0 32 ............................ CACCCACGGCGGCACTTCCGGGTAAACCTCTC 108889 28 100.0 32 ............................ ACGTCAACATGACGCAACCGAGCCCCCTTCGG 108829 28 100.0 32 ............................ AACGCCGAGATCAATCAGGCCATTCGCGGCAC 108769 28 100.0 32 ............................ AAGTACACATCAGCCCAGCTCGACGACATGTT 108709 28 100.0 32 ............................ ATTCAAGGATCGCGGCTTTAATTCGGCCTGGC 108649 28 100.0 32 ............................ ATATCGCCATCTTCCCAGTAATAGAAATCCAC 108589 28 85.7 32 ...........CA..A......C..... TACGACCCGGTCATTAATGGTCATCTGCTCTC 108529 28 67.9 0 A..A.......AAC........C.C.CC | ========== ====== ====== ====== ============================ ================================= ================== 16 28 97.1 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CCCTCGAAATGCGCATGCAGCGTCTCGATACCGGTATCGCGGTCCTGAGCAAGATTGATCCAGTTGCTCTGAGTCATGGCAGGCTTATGGGCAAACAAGGGGATAGAGAAGCGTGTTATCGCGCATGGGGAATGGGAAGTCTAGAAGGTTTGTGCAGGGTGCCTTCAAGGCCTTTCGCGAATGAGTTGGCTTGTGTGGGAGCGACTTCAGTCGCGAAAGCAGTGCTTCAAGCGATGTAACTCTATCGGATGTACTCCCGTGGGAGGGGGCTTGCCCGCGACAATGCAAGGGACAATATCTACCGATGCGTACCCGTATCTACAGCGAGCAATAGACGCACAAAAACATTTTCCGGAATGCTGATTCTGACCCTCTTTTTTTTCACCCAATATGCGCCCCTTTAAAATCAATCACTTACATATCTGATGAAAAAAAGGGGTAAAACGGCTGCTGGTGCATATTTTTCTTTGAAAACGGAAGGTTATCGAGGAGAGTGTCTA # Right flank : CCCAATAACCCCATAACCAACTGATCTACATAAATTTAAATCCAAACCTGCAGAAGCACGCCTGCCCACAACAACCCTTCTGTAATCCACTCCCTACAAGAACCGCAGACTCATCTTTCTGACTCACGACCATCCCCAACCTCAAAAAACCTAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCCTCTCCCCGGCCAAGTGCCATTACTGGTTCGATCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCATTCAAAACGCGCGAATATTTATTATCTGCAGCATTGCCGGGTATTGGTGAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACGGGGACTTCGGTCACTCAGGCGGCGATGCGTGAGCTGGCCAAGGCGGGTGTGCTGGTGGGCTTTTGCGGCGGTGGCGGCACGCCGTTGTTCAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //