Array 1 183701-182144 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDGU01000012.1 Pseudomonas aeruginosa strain PA102 contig000012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 183700 29 96.6 32 ............................T TCTCTCAAGTACAAACTGGCATCGCTGCAATA 183639 29 100.0 32 ............................. GCAACTGATTAGAATACTGGAAGCTCTTATTC 183578 29 100.0 32 ............................. CTAGCCGGGGTTGAGTTCTCCGAGGTTTATCG 183517 29 96.6 32 ............................A CCATTCCCTTCTGGGCCATGGAAGCGACCGGC 183456 29 100.0 32 ............................. GATAGACACCTTCCGATGTGCATGTTTCAGCG 183395 29 100.0 32 ............................. CCATCGACCTTGCAGTCGAGGCGCTTGAGACC 183334 29 100.0 32 ............................. GCGGTAGCGAACACCGCCGACGCTTACCAGGC 183273 29 96.6 33 ............................A GCGGATCCGCGCCCTCGGCTATATCGTCGAGAA 183211 29 100.0 32 ............................. CAGTTTCTGGTCGGCCCGCTTGGCCCAGGCAT 183150 29 100.0 32 ............................. CCGCGACGCCGGTCCCTACCGCCCGCCATTCG 183089 29 100.0 32 ............................. GCAAGTCGCCGTTCGATGGCGACCAGGTCTGG 183028 29 100.0 32 ............................. GAGGCAGGAGGAGGCGAGGACGAAGGAGCAGG 182967 29 100.0 33 ............................. GCAGACCGGGTTCCCCTACGCGCCGGTGTTTTC 182905 29 100.0 33 ............................. GCAGACCGGGTTCCCCTACGCGCCGGTGTTTTC 182843 29 100.0 32 ............................. CCTGATGAAATCGCCAAGGCCATTGGCATGAC 182782 29 100.0 32 ............................. GAAGTGCCTCAAGCCTGGATCGACGTGCAGGC 182721 29 100.0 32 ............................. GTGCCCGAACAGGTCATGGCGGCGCTGCTTGG 182660 29 100.0 32 ............................. CACGGCTTCTCCATCAGCTTCCGCATGCCGCG 182599 29 100.0 32 ............................. ACCTTCACCGTCGGCGAGTTCGTCGTGATCGG 182538 29 96.6 32 .............C............... ACGAATGGGATGCAGTGCCCTTCGTCATAGTC 182477 29 100.0 32 ............................. ATCGGCGCGCTGATGCAGCAGATAGTCGACTT 182416 29 100.0 32 ............................. ATCGCGGAGAGAAGGGCCTGGTCGAGACGGTA 182355 29 100.0 32 ............................. TCGCCGGTGCGGCCGTGGGGTTACGAGCGGCC 182294 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 182233 29 96.6 32 ........T.................... AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 182172 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.3 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGTCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 193573-192874 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDGU01000012.1 Pseudomonas aeruginosa strain PA102 contig000012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 193572 29 100.0 32 ............................. CGCGCCTCCGGGAAGCCGGCCGGCGCGTTGAT 193511 29 100.0 32 ............................. CGGCAGTGACGACGCTGGCAACGCTGGTTGGG 193450 29 96.6 32 ............................A TGGCCCGGCGCGTCAGCTTGAAGGTGGCCAGC 193389 29 100.0 32 ............................. CTGGGTAGTGGCGGTGGCAGCGCTCCGAGCGA 193328 29 100.0 32 ............................. ACAGTCACGCGGCGAGTGATGAAGCCGCAACC 193267 29 100.0 32 ............................. GAGTCGAGGGCGCGACCATTGCGCTGGACGTG 193206 29 100.0 32 ............................. GCCCCGGCGGGACGTCTTGGCGCCCTCCTTTA 193145 29 100.0 32 ............................. TCGTTGTAAGTCGTGACCCCGAAAGAGATCAC 193084 29 100.0 32 ............................. CCTGCATCAGATGCGGCCTCCTTCACGCGGGC 193023 29 100.0 30 ............................. ATGGAAGACCCAACCCGCGGCCAGGGGTGG G [193009] 192963 29 86.2 32 .G............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 192902 28 79.3 0 A..........A..C.....-..A....T | C [192893] ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.8 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGGGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGTTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 496185-497113 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDGU01000001.1 Pseudomonas aeruginosa strain PA102 contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 496185 28 96.4 32 .............C.............. CGAATGACCCGGGCTGTCCGAAGGGCTACAGC 496245 28 96.4 32 .............C.............. GATTCGGCGTATCGACCTGACCACGAATCGGA 496305 28 96.4 32 .............C.............. ACATGGGAATGCTCTCCTGGCACGAAGAAACG 496365 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 496425 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 496486 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 496546 28 100.0 32 ............................ ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 496606 28 100.0 32 ............................ AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 496666 28 100.0 32 ............................ TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 496726 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGAGTTGGT 496786 28 100.0 32 ............................ ATCAGGTACAGCACCAGGGCACCGAAGACGTT 496846 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 496906 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 496966 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 497026 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 497086 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCAACACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCCGGACAGCCGGCGGATAACCGCAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //