Array 1 68926-70538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBNX010000006.1 [Ruminococcus] gnavus strain MSK.8.22 PKNLDCAE_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 68926 36 100.0 35 .................................... CACTCTGCACTATGCTGGCTACTATCGCAACCTTT 68997 36 100.0 35 .................................... CATTTCTCCTTTTCTACTTATTTTTTCTGCATCTT 69068 36 100.0 38 .................................... TTTCTATAACGACCTCTTCTTTAACTATCTTTATTATA 69142 36 100.0 38 .................................... AAGTATTTGAACATTTTGATCCATACCGGAGTATTCTT 69216 36 100.0 37 .................................... TACAGCATTTTCGAATGTATAGCAGTTACAGCTTAAA 69289 36 100.0 36 .................................... CTTTTTGATATTATCCATTGTATCAACCTCCGTTTT 69361 36 100.0 34 .................................... AAGTTATATACTGCCGAACAAATAATAGAAAATG 69431 36 100.0 34 .................................... CCGTACCTTGCATACTCAAAACCCTCCACAATTT 69501 36 100.0 36 .................................... GTGATATTCTTCCACCTCAATGATGTCTCCCTGTCG 69573 36 100.0 34 .................................... GGGATCTCAAATTCAAACATCTTTCTTCCTCCTT 69643 36 100.0 34 .................................... TACTGCCTCATAATAGTTATACATACTTTTCACC 69713 36 100.0 36 .................................... AATTCAACTAATACTTGGTCATAATTTCCATACATA 69785 36 94.4 34 G.....................C............. TTCTTTTCTGTTTGGTGGTAAGTACAGCAATAAT 69855 36 97.2 41 ......................C............. TTTCTAATGCTTGTAATTGGTCTACTCATTCGGAACTTCTC 69932 36 97.2 38 ......................C............. CCAAGTGTTACTCCAATTCCGAATCCGGCAATGGTGGA 70006 36 97.2 34 ......................C............. GCATCCGGGAACATTTCACCTTCACCAGTAGTCA 70076 36 97.2 34 ......................C............. TCTCTGTCATTTGTTCCATGTTTTCTCCTTCCTT 70146 36 97.2 36 ......................C............. TTTTGCATGTTCTTTTCTTTAATTCAGATTTCTTCA 70218 36 94.4 35 ......................C............T TGTGGCTACAGGAGCTACAGGGGTAGACTGTGACC 70289 36 97.2 36 ......................C............. ATTGATACTTCCTTTCATATGAATATTTATCGTATC 70361 36 97.2 34 ......................C............. TCTTACTTGAGGAAAGTCGTGTAAACCATGCATA 70431 36 97.2 36 ......................C............. GTTGCAAAAGCACGCTACAAAAAAGGCTATACATTG 70503 36 75.0 0 ......................C.T.AC.AAT.G.G | ========== ====== ====== ====== ==================================== ========================================= ================== 23 36 97.5 36 ATTGAAAAATAAGATTCCCCGATAGGGGACGGAAAC # Left flank : TCGATACTTCGATCTGTAAAATTACTGTGGAAGATATACAACATGCAATCGAGCTGTTTGGAGAAATGTATGAAGATAATTTTCTGTCTAAATATAAAACAATGGATAAGCTGATGGCTGATTCGGTCTATCTTGGCGGTGGAGCAGGATTTGTGTCTAAGACGATTATCTATGCATTGTTTCAAAAGACAGAAGGCATAAAGACGATTCAGAACATATTTGAGAAAACAGGTGTATCGAAAGTACATAAACACGGACAAGATCTTAAATATGGTGTATCTCCACATATATTGAAGTGTACACATTATCGTGGAAAAACTGTTCAGATGGGATTATGTACCTGCAAAATACAGGAAAAAAGCTAGTTTTGCGCCGCAACCCATAAATCAAGGCTTTCGCGGATATTGAACACGAATAAATACTAAGAATTCCATGAAAAATCTCTTTCCCACGCAAAGTGCCTTGGCAACCCTGAGGAACAGGCAGGTGTGGGAGAGGGT # Right flank : GCATCGAGTATGTGCTCTGACAAGAAGATATGATATTGAAAGAATTAGATTGCTTTTTGGTATTGCTGTCTAGTGAGTTCGAGATGATAAATTAGCCGAACTAGTTTCTTGGTTGTGTGAGACACTGCAACATAGTAATGCTTGCCTTCAGTTCGTTTCTTGGTAAGATAAGTCTTGTAGGTTGGATTCCATAGACAAACATATGCGGTTGCATTAAACAAAGCATATCTAAGGTATCTAGGACTTTAAGTTTACGTCAGACATTAGCATAGAAGCAATTGTATGGGCATCAACTTTATCCGTTTTCGTCTGTCTAAGGCTTAGACCTTTATGTACAGATTAACAAATAAACAAAGAGACTGTGGTTGGAGCCTTTTTTAAACCATCAAGTGGTAGGAGGTGATAATCAATCCACAGTATCTTAAAATAGCATAGTCAAACCTGTAGAAAAGCTAAAGAAAGACTATGACTTTATGCAATAGTAGGAGGTCAGACAATGA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAAAATAAGATTCCCCGATAGGGGACGGAAAC # Alternate repeat : ATTGAAAAATAAGATTCCCCGACAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 354604-353330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBNX010000002.1 [Ruminococcus] gnavus strain MSK.8.22 PKNLDCAE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================================================== ================== 354603 36 100.0 30 .................................... AAATCTGTATGATCCAGAGATCGCCGGAAG 354537 36 100.0 29 .................................... CTCATTTGCGTTCGGTGACACATTCAGAA 354472 36 100.0 30 .................................... CTCTTCCGGTGTCATTTCTCCGATAAGTCC 354406 36 100.0 29 .................................... GCAAGTAATTCCTTTGCTGTTGCTTCGTT 354341 36 100.0 30 .................................... GACGGAGAGGGTGAGACAGTTGAGTAGATA 354275 36 100.0 30 .................................... TGCTGTCATTTCGAGAATTTCATCTACACC 354209 36 100.0 30 .................................... AAGAGAATGGATACATGGACATGGCAAAGT 354143 36 97.2 29 ..................................C. CTTTTCTTCCATCTGGTGTAATTGGTTTT 354078 36 97.2 30 ...................................A CGAGGAGGTTGCTGTTATGGCAAGAAGAGA 354012 36 100.0 30 .................................... CAGCCAGCGCAACCGGTAAGCCCTCACTTG 353946 36 100.0 29 .................................... ACAAAATGCGTATGAGCCTGAGAACGTGT 353881 36 97.2 30 .........................A.......... AAAGTCCACCATCAACAATATTGAGAATGG 353815 36 100.0 30 .................................... AGAGAGCGCACTGAAGAATATGCAGACTTC 353749 36 97.2 29 ....................C............... CTGCAGTCACGAAATGAGCGTATGTTTCT 353684 36 97.2 30 ....................C............... TACTGGTTCTGGAATGGCACACAATAACAT 353618 36 91.7 30 ....................CA.G............ ACAGATTCGACAGTTACAGTATCCACTGGT 353552 36 94.4 30 ......A........................A.... AAAAGCTTTCACCGGGCATTGAGCTTCTGG 353486 36 91.7 86 .G....A........................A.... TGATAAGTAATCGGTTATAAAATAGGAACTTGAAATTGATGTGAAAACATATAAACTATAGCATACATTAAGATTCTCCCCATTAA 353364 35 77.8 0 ...................GAA..C..C.T.-...T | ========== ====== ====== ====== ==================================== ====================================================================================== ================== 19 36 96.9 33 GTTTGAGAATGATGTAAAAATGTATGGTACTGAAAC # Left flank : AAAAAGATAATAAACAAATTGTATGAGGAAATGCAGCAAGTTGCTTATTCTGAAAAAGTGTATGTCAAAACGCAGGAGATAGCGCAAAGTATACAAAGGTATATCTTGGAATTAGAACAGGAAACAGATTATATACTTACGTTTACAGAAGATGTTGATTGGATGGCAATATTTAAAGCATTACGGGTACAGCATGAAATAATAGAGGAAGATTATTTTGAAAAACTGATTCGTTATATTAAAGTTGCAACGGTAGTCATGAAGTATAAGATCTTTGTATTTGTAAATCTCCGAAGCTATTTGTCAGATTTGCAAATGCAAAAACTTATCCAAGAAGCAATTCATCAGGAAGTAAAACTGATATTTGTGGAAAATTGTGTAAAAGATTGCATGGAAGGGGGATTAAGGTATATTATAGATAGAGATCAATGTGAAATCTATTAAATGTGTTTGAGTACCTTGTTTTGCGCAAATGATGGCGGTTCGTTTTTGAATTTGAG # Right flank : ATACAAGTGTACCCAATTTTGGTGCGTGGGCGTTTGAGAAAGATTGTAAAGTTAATGCATATGAAAACTAAAATCAATGTAATCTATTTATATTTGAGAATGATGTAAAAGGTTAAAGGCGGCAAGTTTTTTGCTGCCTTTATTTGTTTTAAAGCTTACAAAAGTCGCTTTATCGTATACCTATTTTGCTATGCTATAACTATCAAAGAAACATAAACAAAAAACGTTTTTTCTATTGATATATTAATTATAAATAATTTCCTGTATAATATTGGAGAGGCAAAATTTGTAAAAATATATTTAAATTAGAGATAATATATGAGGTGTTAGTTTTGAGCCATGAATTGAAGAGCATTAACGAATTTAATATAGAAAAATATTTAAGAGAAAGCAAGGACAGAGGAGCCAATATTATGACACTTAGACAACAATCCGAGTATATCATCCGTCATGCACTCCACAGCGTTCTCCCGGATGAGGCGGTAAAAGCTGTTCTGACC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.21, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAAAAATGTATGGTACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //