Array 1 60397-63231 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOMA010000013.1 Eggerthella lenta strain MSK.14.3 NODE_13_length_91573_cov_299.073, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 60397 33 100.0 34 ................................. ATGCCCGGTGACGCATCTCCCATCATCTCCGGCA 60464 33 100.0 33 ................................. AGGAACGTGAAGCCGCGCGTGAGCTTCGTCATG 60530 33 100.0 33 ................................. GAGACGGTCGCCCGATCGTCCGATGACGGGGAG 60596 33 100.0 33 ................................. ATCACTCGCAGCATCTTGGGAAACCTCCTTTTC 60662 33 100.0 34 ................................. CGTCGCGTGGTGCAGGGCGCGCAAACGCTGTCCA 60729 33 100.0 35 ................................. AGCTCCAATACCATTTTAAATTTTACTTCCAACGG 60797 33 100.0 38 ................................. AACGAACGCTCCGACATTGACGGCATCTCCCGTAGGGA 60868 33 100.0 35 ................................. TCCAGCGCGCTCATGATGGTGGCCCAGTCCATGGC 60936 33 100.0 33 ................................. TTCGCAGCCGCGCCTTTCGTGGCCATGTCTCGC 61002 33 97.0 34 ......T.......................... ACTCCGAGCGACTCGCCCGTGCGGGCGCTGCCGA 61069 33 100.0 34 ................................. TTGGCCGCTCATCGGTACAGACCAATCGCAGGAA 61136 33 100.0 33 ................................. GTTGTCAAGCTCTGCTTCGCCTCCCAGTCAATG 61202 33 100.0 33 ................................. GGCCAGCAGCGCGACGCAGCGCCTCATGGCGAC 61268 33 100.0 33 ................................. CTGTAATGCCTGATCTGTTTGCCGATGTACTCA 61334 33 100.0 33 ................................. GAGAGCGCGGAGCATATGACGCAGTGCGTCTGC 61400 33 100.0 33 ................................. GTCAACGCCGGTGGCACGTGGCCTGCGTCCCTG 61466 33 100.0 32 ................................. ACGCGGCTGCCGTCCTCCATGCGCGCGTCCAT 61531 33 100.0 33 ................................. GAGACCGAAAGCCGCGATTCGTCGAGCATCGTC 61597 33 100.0 35 ................................. GCTTTCGTCTGCTACCTGCTCGTCAGGGATGCGCG 61665 33 100.0 33 ................................. CGCCTGCTTTGCAGGGTCTTGCAGATCGGCGGT 61731 33 100.0 35 ................................. TCCTTGACGTAGAGATAGCGAAACTTGCCGTAACG 61799 33 100.0 33 ................................. AACTTTATCACACTGTCTCGGCTCGATAGCTCC 61865 33 100.0 34 ................................. AAGCGCGGGATGCTCGTTGATCTTGTCTACTACA 61932 33 100.0 34 ................................. CGGCATGGACGGCGATGATCTTGTTGAGGGCGTG 61999 33 100.0 33 ................................. GGATGCGAACCAGAAGAGCTCTACGGTCTCAAG 62065 33 100.0 34 ................................. CATACTGTGAAAGGGGTATAGCCAGGTTCGACGG 62132 33 100.0 34 ................................. CGTCTGGTGATCTCGTCCATTCGATCTGCTCCCT 62199 33 100.0 33 ................................. CGTATCCCAGTACTACCCTGCGGTCGCTGGCGG 62265 33 100.0 33 ................................. TGCCATGCCCTGACCCCTTCAACGGTGGACATC 62331 33 100.0 33 ................................. CGACCTTGCGCGAGACGATGCCCGAACCGTCGG 62397 33 100.0 35 ................................. TCTCCGCTTTCGTCTCGCGGCCATTCCATCCCCGG 62465 33 100.0 34 ................................. CACGCACCCACCATGTGATAGCTGGTCGATCTGT 62532 33 100.0 35 ................................. ACGTTGACCTACGCTGAGAACATGCAGGACAATTC 62600 33 100.0 34 ................................. GTCTCTGCTGGAAGCCAATCGGTCTACATCGAAA 62667 33 100.0 35 ................................. GGGCATATCGGCATAGCATGGTACGAGGAAGCCGA 62735 33 100.0 33 ................................. AACAGAATGTCCTCGTCGTGGGCGCTGAAGCCG 62801 33 97.0 33 .....................A........... TGACGAGTATCGCCTATGGCTTGAAAGCGAGGT 62867 33 100.0 33 ................................. AAGCACACCACCAAGCAGACGCGCAGCCTCATA 62933 33 100.0 34 ................................. CAGAACTTCGCGATGGCGAAGCAGAGCGGCTACG 63000 33 100.0 35 ................................. GTCCCCGTCGGCGGCTTGGTGTCCATGCTGATGAT 63068 33 100.0 33 ................................. TCGTCCTCGCTGAGGAAGTAGGGGTCGAGCGAG 63134 33 100.0 32 ................................. AAACGGTTGAACGATTTGCGGACGCTGGCGAG 63199 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ====================================== ================== 43 33 99.8 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : TGCGCTGCGATCTAGACGGCTACCCGCCGTTTCTATGGAAGTGAGATGGTTGGCATGCTGACAGTGATTACCTACGACGTGAATACCGAGGATCCGGCGGGCCGACGTCGCTTGCGGAAAGTGGCGCGACATTGCGTCAATTACGGTCAGCGTGTCCAGAACTCAGTGTTCGAATGCGTTGCCGATGCTGCGACGATGGTTCGTATCAAGAGCGAGCTCGTCGAGCTGATCGATCCGGAGAAAGATAGTTTGCGATTCTACAGTCTTGGAAACAAATATGAGACGAAGATTGAGCATGTAGGTGCGAAACCAACGTACGAAGCTGAAGGGTTCTTGGCGTTGTAGGACCATGGTGCGAGCATGAAGCTCGCATATGACATACGTGAGGTTCGCACCAAATAGTGTGACATAAAGATGCCTGACGCGCTTGTTGCGTGTACCTTGTTTGTCTAATGACACTATATGTTGATCGAAGCAGTAAATTTGCACATAATATTGCA # Right flank : CTGTTCGGGTTGGCTGGCAAGCTGAACGCTGACACGTCATCGTTCAGCTTGCGGGCGCGCGGGTTGAAGTCGCGAGCAGCTGTCGTGGTACGGCCGAGGCGTGGTCGGTCGTACCCCTCGCGGGCGCGCGGGTAGAAGCAGGGTATCCGGGTTGAAATCGAGCAGCGTTTCGGCAGGTTCTGTCGCTCTCAAACGAGGGGGTAACCGATCCTTGCCGTCGCTTCCTATCGAGACGCGGATTGATTCGCTGATTCCGAGTTTTGCTCGTCGGACGCCTGCGCCGAGTTGTGAAAGGCGCAGGCGTCCTTCGGATCGCTACTCCACCACCAAATCAACGAGCTCAAACGTCGTGCAGTCCACCAGCCCGCGATTCGTCAGCCGCAGCTCGGGCAGGCATGCCAGCGGGATCAGGGCCATCGTCATGAACGGCGACGGCATGGTGCAGCCGATCTCGGCCCATGCGCCCTCCAAGGCATGCACCTTCTCGCTCATCGTCACAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //