Array 1 165204-163772 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERKB010000012.1 Nissabacter archeti strain JGM97 scaffold12_size192831, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 165203 29 100.0 32 ............................. TGCCGCCAGCCACCGCCGGGCTGGCGCGGCGT 165142 29 100.0 32 ............................. AGGTTGACACCGCAAACGGTCTTGGCATCGAT 165081 29 100.0 32 ............................. GCCACAGCCACAACCGAGACAGACAAGACAAT 165020 29 100.0 32 ............................. AGATTACAACAGGGAGGTTGGACGCCGCGCAG 164959 29 100.0 32 ............................. TCACGCCCGCCGCCGCAGCGGTATTTCGTGAC 164898 29 100.0 32 ............................. GTGTCGTTGGCTTCATACGGTGCCAACGCGGC 164837 29 100.0 32 ............................. CTGAAATTGATAGTTATATTGCAGATAAATTA 164776 29 100.0 32 ............................. TATAAAGATAAAATAGTTTATGAAGAAGAATC 164715 29 100.0 32 ............................. GCAAACATCGTCAGCCACAGAGACCCACGATA 164654 29 100.0 32 ............................. ACTGCATATATAAATCGGCAACATCCTTACCC 164593 29 100.0 32 ............................. CCGTAATCCTGACGTGGGAACGGTCGATAATT 164532 29 100.0 32 ............................. CCCCTTCGGTGCAGTAGGTGATCGCCTTTGGG 164471 29 100.0 32 ............................. GTCAAAGACGACGACGGCCGCGCGCTAAACGT 164410 29 100.0 32 ............................. GCCTGGTAATCCGAGGCATCCGCCTGATTCAT 164349 29 96.6 32 .............A............... TGAACGCGCATTGAAGACCTTGCGCACGTCAT 164288 29 100.0 32 ............................. ACTCACGTCCGCAACCTGGAAGGGCTGGCAAA 164227 29 100.0 32 ............................. GAGAATCTGAAATATGGGAATTGCACAGCATA 164166 29 100.0 32 ............................. GCCGGTTGCCGTCCGGGAAGATCCTCCCACTG 164105 29 100.0 32 ............................. GGGTTGGTGCGGGCGCGTCAGTTGGTTGCGGA 164044 29 100.0 32 ............................. TACTGCCGCAGCCAGGCCGGCGGATTTTGTGT 163983 29 100.0 32 ............................. CAAAACAGCGGGAATTTCTGGACGCTGGAGCC 163922 29 100.0 32 ............................. GTATCACGCGTAACGACAAGGTGTGTATTGAA 163861 29 100.0 32 ............................. GGTTGAGGCGTAGTGTCCACGTCTAACAGAGC 163800 29 72.4 0 A..........TTAT.......C....TA | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.7 32 GTGTTCCCCGCGAGAGCGGGGCTAAACCG # Left flank : AGTGCTTGCTGCCGGGGATATTCTGCCACCCCAACCGGCCCCGGATATGCTGCCGCCGGCAATTCCGGAGCCGGAGACACTCGCAGACAGTGGGCATCGGGGGCATTAATCGTGAGCATGTTAATTGTGGTCACAGAGAATGTTCCTCCACGTTTGCGCGGCCGGTTGGCTGTCTGGTTACTGGAGGTACGTGCAGGGGTTTATATCGGCGACACTTCACGGCGAATACGCGAAATGATCTGGCAGCAAATCGACATATTGGCAGAGGAGGGCAATGTCGTCATGGCGTGGGCGACTAACACAGAATCGGGTTTTGATTTTCAAACGTATGGCGTTAACCGACGGATTCCGGTGGAATATGACGGGCTAAGGCTGGTTTCATTTCTGCCCATTGAAAATCAATAATTTAACGCTATCGCCAAGGGTTAAAATTTAAGCAAAAAATCGGTGTTTTTTTAGAGAGGTAAAAACTCCTTTTAGAACAATTATCTACTTTTAGA # Right flank : CACCTGTCCCCGCTTTGTACATTTCGTTACGCAGCGACACCAATCACTCACGGAGCGCTGACCCTAAACTGCGTAGACTCTCCTCACCGGCCTACTTCAGGCTGACTCCAACACGCTGAGGAATATTATGAAAAAGATCGTCGCTATGATTGTTGCCGCTACCCTGGGTATGTCCTCTGTAGCGTTTGCTGCGGAAACCGCTAACCCTGCACCGGCGGCTGCCGCTGCAACCACCACCACGGCACCGGCGGCCAGCGCACCGGCTGCGAAAACCGTGCACCATAAAAAACATAAGAAAGCCGTTGCCCAGAAAGCCCAGGCCGCGAAAAAAACACACAAGAAAGTGACCCATAAAGCGCCGGCTGCCCAGAAAGCCCAGGCCGCGAAAAAAGCACACAAGAAAGTGACGCACAAAGCCCCGGTTGCCCAGAAAGCCCAGGCAGCGAAAAAGACCCACAAAAAAGTGACCCATAAAAAAGCAGCGGCCCATACCGCAGCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39023-38078 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERKB010000006.1 Nissabacter archeti strain JGM97 scaffold6_size287468, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39022 29 100.0 32 ............................. CCGCCGCGCGCGTCTGCGCCTGGGCGTCACGC 38961 29 100.0 32 ............................. GGACGGCTGAGCGGCTAAGCCTTGAGTGCTTT 38900 29 100.0 32 ............................. TGGGGAAAAGTTCGAGCCTTCACGGCCATTAC 38839 29 100.0 32 ............................. ACCGGCAATGATCTCCCCCGCTTCATCAATCA 38778 29 100.0 32 ............................. GTTGCTAGCCTTGCGTGCGCTGTCGCGGAAAG 38717 29 100.0 32 ............................. ATCGCCCGGCGCTATAATGAAAGCCCCGCATA 38656 29 100.0 32 ............................. AATACGGGGACGTTTATTGTTAATTCGCTGGC 38595 29 100.0 32 ............................. CCTTTGACCCTAAAAAGCCGCCCCTTGACGGT 38534 29 100.0 32 ............................. CTCTTAGCACAGCAACTATCAATCTAGATATC 38473 29 100.0 32 ............................. CGCCTCCAGGTTGATGAGTTTGCCGTGGAGGG 38412 29 100.0 32 ............................. TGTCACTTACACGCAGAGAACAGGATAATAAC 38351 29 100.0 32 ............................. CCATGTTATCAGCTGCGCCAGCGCCAGGGGGT 38290 29 100.0 32 ............................. TGTTGTCGGCCAGGCGGATGCGCATCGGATGA 38229 29 100.0 33 ............................. GTCTATGGCGTATTTGTCTTTTTCACGGAGTAC 38167 29 100.0 32 ............................. CTATTGCCAGGTCAGGAGACGCTCATAACATC 38106 29 79.3 0 ................T....A..T.GAC | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.7 32 GTGTTCCCCGCGAGAGCGGGGCTAAACCG # Left flank : AGCGTTCCGGCGGTGATCGCCGTGAGCCGTGAGCCGCTGATTGTCTACTCCGCGATGATGTTCGCCATCCTCGGCCTGCGCGCGCTCTACTTTGTGCTGGAAGCGCTGCGCCGCTATCTGTCGCACCTGGAGAAAGCGGTAGTGGTGTTGCTGTTCTTTATCGCCTTCAAACTCGGCCTGAACGCCAGCGACCACCTCTGGCACCACGGTTACGAGATCGGCATCAACACCAGCCTCTATATCGTACTGATTGTGCTGGGCCTCGGCATCCTCGCCAGCGTGCTGTTCCCTGCTAAAGAGAAGTAATTCTCTCAGCAATCCTGAAAAAACCCCGGCTTGCCGGGGTTTTTCTTTTTCCGGCTGGTGAATACCATAAAACGCATTCTGAATTTTATAACGTTCTGATGAATCAATGATTTATATCGCATAATCATCGTAAAAAAATCGGTAGAATTTTAGCTGTTTAAAAAAGTTTTTATAATCAACGAAATACGATAAGA # Right flank : TATGACTGATCCTGTAATATTGTAGTAATCCAATATGAGAACGCTGTCTAAACGCCTGATATACACATTATATAATGTGACTATTATTTTAATTCAATGTTATTGATTTAATCATTCCCTGTTTTATTTATTTTTCATGACTATGTTTATCCCCATGTTTATTGATTTTTAGTATTTGTTATTGGCTTTTATCAGGCGCAAACTATGCAAGCTTTTCTAATCAATTAGGAGTTTAATAATGGCTATCCCTCCCTATTTATGGTTAAAAGATGATGGTGGTGCACTAATTAAAGGGTTGGTTGACGTGCGTGGCCGGGAAAACAGTATTGAAGTGCTAAGCTTTATGCATGGAGTGGACATTCCTACCGATGGGCACACAGGTCAAATAACCGGGCCGCGAATTCATGATGCATTAGAATTTGAAAAAGAAATTGATAGTTCAAGCCCATTGCTTTATAAAGCATCAACCACCGGTCAAACACTAAAAAGTGCTGAGTTTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 265498-263551 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERKB010000006.1 Nissabacter archeti strain JGM97 scaffold6_size287468, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 265497 28 92.9 32 ...........TG............... AAATGGCACGGATCTACAATAATGGCAGACAT 265437 28 92.9 32 ...........TG............... AGCTACAACTGCTTTCGCGGACAACCATTAAA 265377 28 92.9 32 ...........TG............... GAAAAGGGGGGGCCAATCCATTTGATCCTTTC 265317 28 92.9 32 ...........TG............... TTCACGCGTGCGGCTGCTGGCGGCGGGTTGCC 265257 28 92.9 32 ...........TG............... TCACCACCAGCAACAAACACATGAATGCTTTT 265197 28 92.9 32 ...........TG............... TGAGTGAAATGCGTGACAAAAAACGTTGCCCC 265137 28 92.9 32 ...........TG............... GCTTTATTAAACGCGTCTGCCAACGACGCTAG 265077 28 92.9 32 ...........TG............... AGATACCGTCCTCTTTAAGCCGCAGCGTTGTC 265017 28 92.9 32 ...........TG............... AGTTTGGGGATGTAGTTCGGCCTAAAGAGGTT 264957 28 92.9 32 ...........TG............... GGACTGGGGGCGACTATCACTGACAACAGGAC 264897 28 92.9 32 ...........TG............... TTTGCCGTCTTCTGACAGGCGGCGAACCTCCT 264837 28 92.9 32 ...........TG............... TACCAGGATTGAGCGGTACTGCGGGATTTCCA 264777 28 96.4 32 ...........T................ AAAGTGCCCCCGCATATCCTCCAACACCTCCA 264717 28 100.0 32 ............................ GCTCGCAGCTGTGCCGAGCTTTGAATGATCGG 264657 28 100.0 32 ............................ GTCTTCAAACCCACGCGCATACGCACCCGCTT 264597 28 100.0 32 ............................ CAAAGGCGAGCATGTCACCCTGCTGCCGTCGG 264537 28 100.0 32 ............................ CTGATGTTCAAGCGGATTATCACTGACGACGA 264477 28 100.0 32 ............................ TGGGCAATTACCGCGCCGTCAGACACCGGCAA 264417 28 100.0 32 ............................ ACGCGGTCCATAACAGTCTCCAAGACTTACAA 264357 28 100.0 32 ............................ TCGCCGTTATCGGCCTGGGTGTGTCAGCATAT 264297 28 100.0 32 ............................ AATGAACACAGGGTGCGCACTGATCGAGGCGC 264237 28 100.0 32 ............................ TAACCCCAAAGCCAGTTACGAAGATTATGTAA 264177 28 96.4 32 ...........T................ GCTTCGCTCAGATTGCGCGGCTGGCGGCGGAG 264117 28 96.4 32 ...........T................ TAAATCCCGTAAAAAGCGTTAACCATGTCAGC 264057 28 100.0 32 ............................ ACAGCATTCAGTTTCAACCTCAGCGCCATTAC 263997 28 100.0 32 ............................ TGCACGATTTGGATCAAAAAAGTTTCGCAAGG 263937 28 100.0 32 ............................ TGGATTCGCCACACTTCACCGGCACACCCACA 263877 28 96.4 32 ...........T................ CAACGTTAAAATCACTACCTTTAGAACAGGTT 263817 28 96.4 32 ...........T................ GTCGGCCCACAAGAGCTCTGGGCGCTCAGCAC 263757 28 100.0 32 ............................ CAGTATCGACCAGCGTAACGGGCGCGGCGCGC 263697 28 96.4 32 ...........T................ CAGTTCATGCCGAAGGCCAGGCCACCCATCAT 263637 28 100.0 32 ............................ CGAAATCCGCAGAGGTTCGGCGGAGCTTACCG 263577 27 92.9 0 ...........G............-... | ========== ====== ====== ====== ============================ ================================ ================== 33 28 96.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGCATTGCATACGCTGGAGTCTTTGTACTGGCGTACCGGCCTTAGCGATTATTGCGCTGTTTCAGCGATCACACAGGTCAGCGGGATCAAAGGGTGGCGCACGGTAAGCCGGGTGCAGGTGAAAAGCAGTGCCGGGCGCTTACTGCGGCGCTCAGTGAAGAAAGGCTGGATCAGTGAAGCAGAAGCGGCACAGCGGCTTGAAAATAGTCAGGAACAGCGAAGCGACTTGCCCTGGCTGGCCGTAAAAAGCCTTTCCAGCGGTCACCACTTCCGGCTGTTTATCCGCCACGGTGAACTTCAGCCTGTCGCCACCGCAGGGGAGTTTAGCTGTTATGGCCTGAGTAACACCGCCACCATCCCCTGGTTCTGACCCTTTTATTTCCGCCAAGGATAAGTTGTTGATTTATTGAGACCTAAATATGAGGTAAGAAAAAAGGGGTAAGGAAGAGAATTAAGAGATTTTTTACTTAAAACCAAAAAGTTAGAGAGTTGGCTGGTCA # Right flank : GGTTGAAGGCGGCTTGATGGAGAGGCCAGACGCAGAAAAGCAAAAACCCAGCCATTGGCTGGGTTTTCTGAATAAGTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTATTGGCTGAAGGCCGTCAACGGCTTTATGCAGAATTCTCCCTGAAACCGGGCTGACTGCTCTCTTTTCAGGCAAAAAGCAGCAGGGCAGCAGCAAAAACTGCCCCTGACAGGCGATGTTTATCAGGTCAGCGCACCATGTTTACGGCAGCGTGCGACCTGCAAAACATCCTCAGCCAGCCGTAATGCGACTTCCACATCATGGGGCTGCCGTTTTACCAGCAATTTGCTCAAGCACCCTTCCAGAATCAGCTCCATCTGCTCGGCCACCATCGGCGCATCGTCTGCGTCCATGTCCTGCAACAGCGCCAGCGTATAGTCATAAGAGGC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //