Array 1 109591-107972 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOU01000004.1 Salmonella enterica strain BCW_4898 NODE_4_length_355508_cov_0.39167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109590 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 109529 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 109468 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 109407 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 109346 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 109285 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 109224 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 109163 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 109102 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 109041 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 108980 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 108918 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 108856 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 108795 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 108734 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 108673 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 108612 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 108551 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 108490 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 108429 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 108367 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 108306 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 108245 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 108184 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 108123 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 108062 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 108001 29 93.1 0 A..............A............. | A [107974] ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126948-125761 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOU01000004.1 Salmonella enterica strain BCW_4898 NODE_4_length_355508_cov_0.39167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126947 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 126886 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 126825 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 126764 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 126703 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 126642 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 126581 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 126520 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 126459 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 126398 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 126337 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 126276 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 126215 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 126154 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 126093 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 126032 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 125971 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 125910 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 125849 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 125788 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //