Array 1 43969-42495 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYG010000032.1 Streptomyces sp. RK76 RK76_contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43968 29 96.6 32 ............................A GCACCGGGACGGATGCCCCTGGGTCGACCCGA 43907 29 100.0 32 ............................. GGACCCACCTTCGGTGTCAGGGTCGGCCGGGC 43846 29 96.6 32 ............................T TCCCTCCAGTGCCTTGACGCTGCTTCGCTTCA 43785 29 100.0 32 ............................. GGCTTCAAGCCGGCCTGACACCCACCAGCTCC 43724 29 96.6 32 ............................T GTCGGGGTTCCAGACGCGGCCGGACACAGCGG 43663 29 100.0 32 ............................. TCGACTGGTCGGGGGCACCGTCGCGTCTCGAT 43602 29 100.0 32 ............................. GTGATCGTTGAGTGCCGCAGCTTCGTCTTCGC 43541 29 96.6 32 ............................G TCGACGCCGTGGCCCTTGCCGCCGCAGGTGCA 43480 29 96.6 32 ............................G GCATACGCCGAGCGGTACGCGCTCCGCTCACT 43419 29 96.6 32 ............................G CGCTGATGCCGATCATCGCCGATGTGGTCGGC 43358 29 96.6 32 ............................G GGGTCTCATGGCCCTCGGAGCCGGGGTTTTCC 43297 29 96.6 32 ............................A CGGCCACCTACAAGGGTGTGTCCGCTGTGAAC 43236 29 96.6 33 .C........................... GCCCGACCCGCTGCTGTCCGTGCGGATCGACGA 43174 29 100.0 32 ............................. GCCGCCTTCTCCCGGGCCCGTCGCGCCATCGG 43113 29 100.0 32 ............................. TGTCGGACCATGCGTTCGTCCTCCGCCAGCTC 43052 29 96.6 32 ............................T GGATCGCCCACACCTATGCATCACGACCAACC 42991 29 93.1 32 ...............A............A TGAGGCGCAGGGCGGTCTTGTCGTTGCCGAAC 42930 29 96.6 32 ............................G ACGTACCCGAGCAGCCCCCAGTACTGAAGGGC 42869 29 96.6 33 .................A........... TTCCGCCGCCGGGGGCTTCACCGAGCAGGAGCG 42807 29 93.1 12 ..........T.................G ATGATCCAATTC GGC [42788] Deletion [42767] 42763 29 86.2 32 ..............T.........A.A.G CGGCGGTGCGCCGCTGGCGGGAGGCGAACCCG 42702 27 89.7 32 ...........--.T.............. TTCTCTGCGGCTGAGTGGAAGGCCGTACCTTG 42643 28 93.1 32 ........-...................G TTCGACCGGGGCACCGGCCGTATGCGCCGCGT 42583 29 96.6 31 ....................A........ GGAGCCGCGCGGCGCCTGGTAGTGGATGACG 42523 29 89.7 0 .........AT...T.............. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 96.0 31 GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Left flank : CTGCCGGACGAGGACCTCGGTGCACTCTGGGACGACGGCGACAGCGTCGTCAGCAGCGGCCGCAACTGGAGCGCCACGCACCACTTGGACATCATCCCTGAACCCACCGACCCCACCCTTGCGGAGCCAACCCCGTGAGCGCCGGGACCACCGTTGTCGTGCTCATCGCGGCCCCATCTGGGCTCCGCGGACACCTCACCCGCTGGTTCGTCGAAGTAGCCGCCGGCGTCTTCGTCGGCGATCCCAACCCTCGCATCCGCGACCGCCTCTGGACCATCCTTGCAGAACGCATCCACGACGGCCAAGCCGTCATGATCGAACCCGCTGCCACGGAACAAGGCTGGTCGGCCCGCACCGCCGGCCGCGACCGCTGGACCCCCGTCGACTTCGACGGCCTGACCCTCATGGCCCGTCCCCGCCAGAACGGACAATCTTGGCGGCCTACGAACGAGGCAAAGGAAAATGGCATGATCACGTGACAACGCTGCAGGCCATGAAGT # Right flank : CGCAGGCACGGCGAGGCCGTCACGACGACCCTGACGACACGTCGCGGCTGCCCTCTTCGGTCTGCTCCCGGAAGTCCGGCACCGGCCAGTCGAACGCCGCGTCGATGCTGGCAAACTGCGACTGGTAGTCCTTGGCGTAGAAGGGCGGGAACATGACGACCGGGGCGTCTGCCGGTACGACGTCGCGCAGGTAGTCGCGGACGTCCCCGGCGAAGAACGAGCCGAGGCGGGTCTCCACCCCTTGGAGCTTGGCGACCGTCTTGGAGTGCATCCGCTCCCACTGGAGCTCCGTCGCGACCATGACCCGCCGGTGGTAGTCGCCGTGCTTGCCGACGTAGCCGAGGAACCTGGTGTCGAGCATGATCGTGGCGAGGAGGTCGGTGCGGTCCTCGGTGTACGGCTCCAGCCACGGCACCTGCTCCAGGTACTCGAACTTCAGCCGGTAGTCCAAGTCCTGGTCCGACAGCCACCAGCCGAGGGCGCAGGAGCAGCCCTGGATG # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 54482-56096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYG010000032.1 Streptomyces sp. RK76 RK76_contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54482 28 100.0 33 ............................ CCCGCCTGCCAAGGACGGTGCCTGATGCCTAGG 54543 28 100.0 33 ............................ CCGCTGGCCAGAGAGAGGGTCAGGGCCTGCAAG 54604 28 100.0 33 ............................ CCCCCTGTGTTGGTTGTAGCCAACGGCGAAGGC 54665 28 100.0 33 ............................ GAAGGGAGTGGGCGACATGCGCGTGGACGAGAT 54726 28 100.0 33 ............................ ACCGCGACGGGCGCCAGGGCCAGACACAGCGGG 54787 28 100.0 33 ............................ CTGAGTTATCACCTTGTGGTGCTCGGGCCTCAG 54848 28 100.0 33 ............................ ACACAGAACTACGTCCGGTCCATCACCACTCTC 54909 28 100.0 33 ............................ GGCATGATTAGTGATGTCGGAAGGGAATGGCAG 54970 28 100.0 33 ............................ CCCCCACGACGAGAACACGCGCCCGTGCGTGGA 55031 28 100.0 33 ............................ CCGGTGACCGTGCCCGAACTCGGCAGCCGGACC 55092 28 100.0 33 ............................ TAGGAGTCGAGGGGCTCGTCGAGGTAGTCGTCG 55153 28 100.0 33 ............................ CTCGTTCTTTCCGCAGGTCCGGGCCAGCTTGGC 55214 28 100.0 33 ............................ TCGAACAAGGTTTCGATACAGGTTGGCGGTCGC 55275 28 100.0 33 ............................ CTCCACCGCACCCGCTGAACCCCACCCCGGAGC 55336 28 100.0 33 ............................ TGCTGACGGAGCCGATGAAGGCGTCGTCGGCAG 55397 28 100.0 33 ............................ GGACACCATGGTCCTCGGCCGCAGCGACTACCA 55458 28 100.0 33 ............................ AGGCGTTGAGGATGCTCGCCTCGAAATGGGAGT 55519 28 100.0 33 ............................ CATGCCGAGGGCTCCGCCGATGATGAGTGACTT 55580 28 100.0 33 ............................ TAGCTCGATCAGAGCTGCGTCGCTGAGGTGCTT C [55595] 55642 28 100.0 33 ............................ CTGGGTCGGCGGGCTCGACTGGCCGAGCGCCGT 55703 28 100.0 33 ............................ CGTCCACGCCTACGCGACCGGACCGGGTGACGA 55764 28 100.0 33 ............................ CCCGAGACAGCTGCGGCAGAAGACGTGCGGCTG 55825 28 96.4 33 ........................A... CGCGGACCTGAACCCCCGCCGCGCCTACCGCGC 55886 28 96.4 33 ........................T... CATCATCGAGATCGCCACACCGAACTACCAGAG 55947 28 96.4 33 .............T.............. GGCGTACGCCTGCGACCGCAACGGAGGCTCGTG 56008 28 96.4 33 A........................... GCGGTTGGTGAAGGTGGTGAAGGCCCCGGAGAT 56069 28 82.1 0 ............TT.........TC.A. | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.8 33 GTCGTCCCCGCACCCGCGGGGGTAGCTC # Left flank : CCGCCGGTAGCCGCCCCCACGTCAGTCCCGCCGCCAGCACCGGTGCGGCCTCGGCCGCGTCCATGGCCTGGAACGCCGGGCACGCCTTACCGCAGTCGTGGATGCCGCACACCCACATGAACCACGCACGCCCTCGGCCACCGCTGACCTCGTCCAGCCGCCGCCGGAACGTGGCCGACACGTACTGGTCCCACATCGTCCCCGCCACGGCAGCCGTGTCCAGCAGATGCCCCAGCAGTAGATGCGTCCGCCCACCGTTGCGCGCAGCCGACTTCCCCCACAACCGCGACACCCGCGTGATGACCTCGTCGGCCAGGCCCATCGACCGCATCAACTCGACGACCGACCGCTCATCCTCCACGCCCGCCCCCTGAAGACTCGGCTGCTCGCAGCCAGTTGGTGCCGGCACTGTAAACGGAGCCACTGACAATGCCTGCCGAGGCCGAAGCGAGATGAAGGAAAACAGGTACCCTCGCTCAAATCACCGCAGCTCACGAAGT # Right flank : CGTTCACTCAGTTATACGGTTCGAAGGAGCTCTGCTCCCCGCACCCGCGGGGACCGGCTGCTGCGAACCGGCAAGGTTCACAGCCGATGGCTCGAAGCATGGGCCTCCTGAAAATCACTGACTGACGCCCGACCCCGTAGGTATTCATGGCGGTATACTTTCCGACGTGGATACGACGATCAAGATCGGTGCGGAGACCCGCGACAAGCTCGCCGCTCTGGCCGAGGCCAGGAACATGTCGATGCGGGCGTTGATCGAGGAGTTCGCCGCGACCGCGCTCACTCCTGCGCAGTTGCGTGAGCGAGCCGAACGCACAGACGCGTTCTTGGCCGCAGAGTTCGGGCACCGGGTCAGCGACGATGAAGCTGGCGCATTGCGTGAGCGGATGCGGCAGGCGCAGAACGCCGGTCAGGCTCGGGTTCGGGGCACGGCGGCGTGATCGTCGAGCACTACGTCCTGGACAGTCGCACACTCCTTGCTCTGGGGGGCAACAAGCAGGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //