Array 1 22894-24324 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHZY01000019.1 Bifidobacterium avesanii strain TREC sequence19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22894 28 100.0 33 ............................ CGGGTGGGACTGGGGCGGCCAGATCGCCGGCGA 22955 28 100.0 33 ............................ CCACGAGTCGCTGCCGGCCAATGTGCCGCACAT 23016 28 100.0 33 ............................ CGTGCGCCAGTCGTTGTAGCCGACCCTGCCTTT 23077 28 100.0 33 ............................ CTGCGCGTCCGTGGGCCATCCGACGGCTTCGGG 23138 28 100.0 33 ............................ CGCGGATGATTCCCTCGGTGGGCACCATGTCGA 23199 28 100.0 33 ............................ CGGGATTCAGCGGGCAATCCGATCGACCAGACG 23260 28 100.0 33 ............................ CCTACGTGGGCCTTGCCGGCCTGAAACGCGCCA 23321 28 100.0 33 ............................ CGTTTCCAAGGGGATCGCGATGAACGGCGCGGC 23382 28 100.0 33 ............................ CGTGGTGCAGGCCGTGACCAAGTTCGTGCAGTC 23443 28 100.0 33 ............................ CCCAGTGAGCATCATCACCGACGAAATCGAGGA 23504 28 100.0 33 ............................ CGGGTAGTCGAAGACGCGGATGCTCATCACTCC 23565 28 100.0 33 ............................ CTGCCCGCGTCGAAATGCACGGGCGTGTCGGAC 23626 28 100.0 33 ............................ CCGGACGGAACCCAGACCAAGCGGCGCGGCTTC 23687 28 100.0 33 ............................ CACGCTGTCGATGGTGCGGATCTCCATGCCGTC 23748 28 100.0 33 ............................ CCTCGTGAAAACCGTCATGGACGCGTTGAACGG 23809 28 100.0 33 ............................ CGCACCGTCGAGGCCGGGGCCCGATGCTCCATG 23870 28 100.0 33 ............................ CTCGAAGGACCGGGGCATGTGGGAGCGGGTCAC 23931 28 96.4 33 ...............A............ CTGTCCGGCGACGGCATTCCCCTCGAGGGGGTG 23992 28 100.0 33 ............................ CTCGCACGGCTCGATGGCATGCGCCGGCGCAGC 24053 28 100.0 33 ............................ CGGGACCGGCCGCGTGGTCGAGGACAAGGCCTA 24114 28 100.0 33 ............................ CTCGGCCTCGACAACAAGTACAGCCGCGACGTG 24175 28 100.0 33 ............................ CGGCGGCACTGCCCCGGCGAACAGCGGGCTCAT 24236 28 100.0 33 ............................ CCTGTGGATGAAACCGCAGGACACGCAAGTGGA 24297 28 85.7 0 ......T.T......T...........T | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.3 33 GTGTTCCCCGCGTAGGCGGGGATGATCC # Left flank : GAGGAATGGTGAAAAGGGGCGTATGCGATGGTGGTGATAGTGCTGACCGCCTGTCCCGTGGGCCTTCGCGGTGACCTGACCCGATGGTTATTGGAAATATCGGCTGGTGTCTTCGTCGGTCATATCAGCGCCAGAGTTCGGGATCAACTGTGGGAGCGGATTGTTGGATTGGTGCGGGATGGGCGGGCAATCATGGTGTATTCCGCGCGCAATGAGCAACACCTCGCGTTCCGGATTCATCATGCTGATTGGATTCCGGTGGATTGCGATGGGCTGGAGCTTATCAAACGACCTAAAGGAAAGGAGGCTCCCGAATCCAATTCCCGTCGTCCGGGTTGGAGTAATGCCAGCAAATGGAGATCGGCGCGTAAATACCAATGAGGTTGCCGTTCTGCGACCTTGCCCGGATAGCGTCTCCGCGCTTAGCGAGTGCCGGCAAAGTGAATGAAAATGGAGTAGCGCAGCTTCGATATCCATTGGAATCATTATGATTACGAAGT # Right flank : TTTGCAAGTCCGTTCAGTATCCGGCGTGTCCGACTAGCCTGTGTCGAGTCGGACACGTCAGACGCCTCTGGCACTGTATCTGTACTCTTCCCTTGGGACGGGCATGAGGGTAGTGTTCCGGTGGGCTTGAGTATTGGGATTTTGCTGGCCCCTCCCGGTGGTGGGTTTAGGCGTTGATCCATTGTCGGCTGAGTGTGCTGAGTGGTGTTGCGGGGTCTCGGTTGCCGCGTAGCCAGCATGGGGCGTGGGTGGTCTTGCATTTGTCGAAGAAGGCTTTGCGGTCCTTTTCGAATCGGCGTCCGCCTTTGCGCAGGCGTCGGCTTGGCGCGACCATTGAGCACCTCAGAATCGTTGGTATTCCAGTCGTGTTGTGGTGCTCCCAAGTTGTATACCTACAGTTATTGTATTGCTATAGATATGTTGACAAGGAAGACCGGCAACAAGTCAAGAGTGAAAGGAGCAGCACGGGATGACAGCCGAGTGGATCACGGCGATAGCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTAGGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 97128-97611 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHZY01000005.1 Bifidobacterium avesanii strain TREC sequence05, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 97128 36 97.2 28 .................T.................. GAAGACCGTGGCGGATGTCGCGGATTTC 97192 36 100.0 28 .................................... GGACACGTCATCGTGTGCGAGGAATGCG 97256 36 100.0 28 .................................... CCTCGCACGATATGAGACCATGCGCGTA 97320 36 100.0 28 .................................... CGGCGCGACGCCGGCCGCCCGCGGCACC 97384 36 100.0 28 .................................... CCATTCGCGCATTTCCCACGCCCACATG 97448 36 100.0 28 .................................... AATGGGCGTATCAGGGTTTCGCCAAGCA 97512 36 100.0 28 .................................... CCGTGTCATCCGACGTGACCGACTCGTC 97576 36 97.2 0 .................T.................. | ========== ====== ====== ====== ==================================== ============================ ================== 8 36 99.3 28 GTTGAGAATTAGCATCTCCCCCTCTTGATAAGCTTG # Left flank : TTAATCGGCGTGCCGGTTTTCGACACGCCGATTTGATTACCCACGGATATTAGCGTATGCTAATAATCATCAAGCCCGATCGGGCAACGACAATCGCAGTTTGAGAACTTCAGAGTGCATCCCCATACATGCGAATATTACAATTCGCTAGTATTATCGGACTCACCTAAACCGAAAGTAGGTGAGCCAATGGGACTTAAGGAACTACGCAAGGCCACTGGACTAACCCAAGTCCAGTTAGCCAAGCGGGCGGGCATGTCCCAAACCGAAATAAGCGCCTATGAAACCGGCCGTAGAGATGTCGGCAACATGACGCTTACCACGGCATTGAGATTGTCCCGCATACTTAATTGCCATCCGTCGGATCTGACGGACGGATACCCCGATTAAAAGAATGCGGCTAGGCACTACCAACACCTAGCCGCGTGCTTCAAAAGTAAGTGATCAAACCAAATTCTGAGGCATGGTGAATTTTAGTACGCCTCACAAGGAAAATGAGG # Right flank : GTTATCTCCTCAAGAGGGGCTATTTTTCGCCGTTTCTAGCTGATTCCACATTCAGAAAAGCGTGAACAGTTCCGGAGTTTCGCTTTCACTCTCTTGTTTCAAACTGGAAAAACGCAGTGACGACGACCACTGATGGTCACTCAAATGCACCACGCGAACAAGACCATCCGGAGGAAGGTGCTCCTTGATGGTCTGAACAGTGGAACGATTGCCCGCTTGCGTAGGCGTGTATCTCACGTATACGGAATACTGCACCATGGCATATCCCATATCGATCAGCAGATTGCGGAATTCCGTGGCACGGTGACGCTGCTTTTTCGTCTTAACCGGCAAATCGAACATCACCAAGCACCACATGCCGCCACTGTCCTCGTCCGTTTTCATAATGTCCCCGCATACTCCGGTACGGGAAGACGGTCGATTTTGCCTTCGCAGTAGAGACCATATTGTCTTGTGAAGTCATTGAGTGAACTGGGGATGGTCAGACCGTCTTCATTGAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGAATTAGCATCTCCCCCTCTTGATAAGCTTG # Alternate repeat : GTTGAGAATTAGCATCTTCCCCTCTTGATAAGCTTG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //