Array 1 4088-4860 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_WEGQ01000059.1 Mycobacterium avium subsp. hominissuis strain GM44 contig_59_length_25260_depth_1.18x, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	============================	====================================	==================
      4088	    28	  92.9	    34	C...........T...............	GGTCGGTCACTGCGGTGGTGTCCTGTGCATGCTC  	
      4150	    28	  96.4	    33	C...........................	TCCCAGGCGGACGCAGTGCCAGGGATGGCGAGT   	
      4211	    28	 100.0	    34	............................	CGAGGCCGTCGCGGAGGCCTTGACCGACCCCGAT  	
      4273	    28	 100.0	    36	............................	GCGCACCTCAGCTGCTGTGCTGCGTGAGCGCGTCAT	
      4337	    28	 100.0	    34	............................	CCTGCACCAGTCGATCCACTGCGACGTGCGCAGC  	
      4399	    28	 100.0	    34	............................	CATCCCAGGTCAGGAAGTCTGCTCCCCGCGTAAG  	
      4461	    28	 100.0	    34	............................	GGGCCTGTTGCTCATCGGCCCGCCGCGCTCGGGC  	
      4523	    28	 100.0	    33	............................	GCCGATACCGGGCTTGGCATCCGTGCCGTACTG   	
      4584	    28	  92.9	    33	C........................C..	CGTGCCCGGTGGAGGAACCACCTCTCCCCCCAC   	
      4645	    28	 100.0	    33	............................	GGCCGCAGAGGAGGCCGTCACCGCGGCGAAGAC   	
      4706	    28	  96.4	    35	C...........................	CCTCCGATCCAGGTACCGCGTCCGGAAGATGTGGC 	
      4769	    28	  89.3	    36	C...........T............C..	CCCCCGTCTGCAGCGCAACGGTTCCTACTGCACCTC	
      4833	    28	  96.4	     0	C...........................	|                                   	
==========	======	======	======	============================	====================================	==================
        13	    28	  97.3	    34	ATGCTCCCCGCGCAAGCGGGGATGAACC	                                    	       

# Left flank :   TGGTCGTGGCGCTGGACTGCACCGCGACCGGTTGCCCGGCCACGCCCGTGGAGCATGCCGACAACACCACCGCGGCGGCGATGCCGGCGGCGGCTGCTCCAAGTCGCGTCTTCGTGCTCATGCGTTCGATTTTGGCAGATGAGGCCGAACAACCCGCCGATGCGCGTGTCACGTCCCCCATCCGGATGCCTTGAGCGCGCGCGGGATTCATCGGTCGGCCAGCTCTACAAGGCGCCGTTCTACGGCGCGGAGGTCGGCCACCACGGCGGTCAACTTCTCCGCGTCGGCGACGGTGCTGGGGGCTTGCTCCAGGAGCTTGATCGCCTCGCGCAGCCGGGTGCGGGCACCGCTCACGTCGTCGTGGATCGAGCGGTCCAGGTTGGTGATCAGCGGTCGGTAGCTGGTGCTCATGCCCGCACGGTGGCATGTCGCCGCGGTGGGGTGATGTGCGCGGCGCGGGTACGGAGGCGCACTGCGCTGTATCGTAGGAGGCAGTGAGT
# Right flank :  CGCGCACCGAAGTCGTGCCGCATCCAACGGGCCGGCACCGAGGTGCAGTAGGAACCGTTGCCCTCCAGACGGTTCCGGAAAAGTTGGAACAACATTTCTGATTCTGTCCCACCGTCCCGCTGACCAGCAGGCTCTCGATTATCGAGACAGATTCGGCGTCTGATCAGGCACGATGCGGCGCCTTCGTTGCGGACCACTGTCCAATGTGACTGCTACAACTGGAGCCAGCTTCCCCAAGCTGCCCAGCCAACCGGAGGAGAGACGATGACCACCACCACCACCACCCGTATCCGCATCGGAACGCCTGCCGTCGCCGAGCGACTCGGCGTGTCGGACGAGACCATCCGTCAGGAGATCAAGCGCGGCAACCTGCCCGCGATCCGCGTCGGCCGCACCTACCGCGTGCTTGAGAGCGACGTCGACGAGTACATCGCCGCCGCGGAGGCGGAGGCGTACAGCGCGCGAAAGCGCAAGGTGGGCGTGGAGGTCACTTCAGGCGA

# Questionable array : NO	 Score: 6.08
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATGCTCCCCGCGCAAGCGGGGATGAACC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGCTCCCCGCGCAAGCGGGGATGATCC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-10.50,-8.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.65,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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