Array 1 32078-30113 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJU01000073.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 32077 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 32016 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 31955 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 31894 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 31833 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 31772 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 31711 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 31649 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 31588 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 31527 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 31466 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31405 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31344 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 31283 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 31222 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31161 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31100 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 31039 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 30978 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 30917 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 30856 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 30794 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 30691 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30630 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30569 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30508 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 30447 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 30386 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30325 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30264 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30203 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30142 29 96.6 0 A............................ | A [30115] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5563-6872 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJU01000092.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM207, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5563 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5624 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5685 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5746 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5807 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5868 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5929 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5990 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6051 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6112 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6173 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6234 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6295 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6357 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6418 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6479 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6540 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6601 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6662 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6723 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6784 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6845 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //