Array 1 948309-943658 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051862.1 Acinetobacter baumannii strain Ab-C102 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 948308 29 96.6 31 ............................T CAAATTCGCATAATGAGCACTGATGTTAAAT 948248 29 96.6 31 ............................T CCTAGCCCTACGGGTACTTGTGGTGGTGCTA 948188 29 100.0 31 ............................. TGAGTTTCCTGCAATCAGATTGACTCACATC 948128 29 96.6 31 ............................T TATGTCGAGATTAAGGCGTCTCCGTTAAAGT 948068 29 96.6 31 ............................T GAGGAGGCTTTAACCATGCAAGTTTCATTTA 948008 29 96.6 31 ............................T TGAACAGCACCAAACTTTTTCTGTGAGTTAT 947948 29 96.6 31 ............................T CCAAACTCTTGCAAGCTAGCGAGATAAGCAG 947888 29 96.6 31 ............................T CCAATACCACCGTGATGACAAGGGGCGAATC 947828 29 96.6 31 ............................G ACCACATGTCGATGAATACAACTATGTTGAT 947768 29 100.0 31 ............................. TCACGCAAATTCACCGCGCCGTTTGCACAGC 947708 29 100.0 31 ............................. ATGCTTCAATCCACTCTTGATCAGTGTGACC 947648 29 100.0 31 ............................. GATGTTGTACATGATTTTTCAGGACAACCGT 947588 29 96.6 31 ............................T CTCTAAATAATGCAGGCATTAACTGCTACAA 947528 29 96.6 31 ............................C GTTACAACTTGCAGCACCCACTGCAAATTTA 947468 29 96.6 31 ............................T CACTCACAAGCGGCTCATTCTAATAGCTCGA 947408 29 100.0 31 ............................. CCAAGAGCCTTTATGAGATCAGCGTCGTTCA 947348 29 96.6 31 ............................T GAATACATTCTTGAGCATGAGTCAATGACGG 947288 29 96.6 31 ............................T ACTGGAGTGCCGACCAGTGGAACATGCCTTC 947228 29 96.6 31 ............................T TCTTCTCGAATAGTCACAAAACGGCAGATGT 947168 29 100.0 31 ............................. ATTGCCTTTATGTTCGATGTTTGGCATACGG 947108 29 100.0 31 ............................. ACAACTAAAGTGCAGGCTCTATCGAAAATGA 947048 29 96.6 32 ............................T GAACAGGTGATCGCTTTGTTATCTGCCACGAT 946987 29 96.6 31 ............................T CCACCATAGATTTTAATGTTCTTGTGTTGAC 946927 29 100.0 31 ............................. ACAAGGAATAGTACAACTCCGATCAGTGACC 946867 29 96.6 31 ............................T GTGTAAGCTTGCCGCCTGCAATAACTCGTGC 946807 29 96.6 31 ............................T TGTAACGTTTAGTAATGGCTTCCTGCTTAAG 946747 29 100.0 31 ............................. CCCCGAAGTCACGAATAAACTGTTCTGGTTT 946687 29 96.6 31 ............................C TGCGAACAATCGTGTTATTTATCATGAGCAA 946627 29 100.0 31 ............................. TAGTCGCTTGCGGTACGATCTTAGCTGCACC 946567 29 100.0 31 ............................. AATCAGTTTTAAGGTGTAACTGGTGCAATCA 946507 29 96.6 31 ............................T GCAGTTCTGCGTTACGTGTTTCAGGATGCAT 946447 29 96.6 31 ............................T AAAGGGCGTGGCAAAGGCATTACGTGTGAAA 946387 29 96.6 31 ............................C TCTACACCTTCGCGAATAAGTACGCAGGGCT 946327 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 946267 29 96.6 31 ............................T GAGCAGGTCGGTTATTCTGAACCTGAAAATA 946207 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 946147 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 946087 29 100.0 31 ............................. GTCAGGCCCTAGCTTTTGAGTCACACTTTCG 946027 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 945967 29 100.0 31 ............................. CAAGCGATAACTTGCCGCCAATCACTGTTTA 945907 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 945847 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 945787 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 945727 29 96.6 31 ............................T GTTGGGCCAATAATCAGAGTGTGGCCTACAT 945667 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 945607 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 945547 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 945487 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 945427 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 945367 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 945307 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 945247 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 945187 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 945127 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 945067 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 945007 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 944947 29 100.0 31 ............................. GAAGTACGAATCAATGTGAATGAATAACCAA 944887 29 96.6 31 ............................C AGTAACAGCAAAAACAAAAACAGTAACTAAA 944827 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 944767 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 944707 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 944647 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 944587 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 944527 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 944467 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 944407 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 944347 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 944287 29 96.6 31 ............................T AACAGAAGCGCAAAAAAAAGCGTATATCATT 944227 29 96.6 31 ............................T TCACCTGCAAAGTAAATCGCATAAATCTCGC 944167 29 100.0 31 ............................. ATTTCAGCGTCAATAGTCTCAATATGATCGA 944107 29 100.0 31 ............................. TCCCGGAAGGCTTGGCTAAACTTGTACTTTT 944047 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 943987 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 943927 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 943867 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 943807 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 943746 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 943686 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 78 29 98.0 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAGATGGCGTCAATTGAACTCGAAATTTAAGTTATTGAATATAAATAGTATAGATAAATCAATAAAAACAAGGGATACAAACTGGGATACAAATTACTTGTTGCTACCCTTAAATTATCGCTTTAAATCTCTATAAAAATTCTCATGACTTCCAAGGGCATATCTCCTTGATCGGTGGCTCAGGTTCTTAATAGATTAGATTGAGAGGTTCACCTTATTACGGTACTTGTGAATATGTGAGTATCTTTAAGCTACTCACTAACTATCTTTGAGCTAGTCAGTAGAGTTTTAGATTCTAAATCCGCATTTCAAATTCTGTCGATCAATCGAGTAAGGTTTTATTGGAATCTATGGCAAATGGATAGGAATAGCCATAAGTCACCAATCACCCCAAGATTACCCCATGTTTATATTTTCTGAACCTCACAAAACCTGACATTTAGAACGCC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 953868-954374 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051862.1 Acinetobacter baumannii strain Ab-C102 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 953868 27 75.0 27 T...C.-....A......AG..G..... TTAATGCTTAGCATTGATTGATATGTG 953922 28 85.7 29 ...T.C.............G.......T ATAGGGCAATTCTGATCTTAAGTATTTAT G [953927] 953980 27 78.6 39 ....GC..C.AT...-............ GCCCTATTTTTCATTTTTCCTTCAAAAGTAATTTTGAAA G [953998] 954047 28 85.7 32 C..T......A.C............... CAGCGTTCTGCTTTACCGTTTACATATCGCGG 954107 28 92.9 32 ............CC.............. TTGCTTAGGCAAATGCACTGATTTTAAAGAAG 954167 28 100.0 32 ............................ TATCATGAACATTGTTCCTTGACCCACGGACA 954227 28 96.4 32 .........T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 954287 28 96.4 32 ...G........................ TGAGGGTGCCACACATTGGCAGGCTGGAGTGT 954347 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 9 28 90.1 32 GTTATTCATCGCATAGATGATTTAGAAA # Left flank : TGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTATTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGTTCTTACTCCTCACAAATAGTAGTGATCGGAGGTAGATCTAGGCCGTGTTGTAGAGTCGAGTATGACAAAAATTTAAAATGTTGTGCTATCATTTGGATAGTCCTTATTTAAGTAGTAATAGCTTTGAAAATGGACAAAAGCAGGTATGAAGTTTGGTCACGGAATACCTGCTTTTTTTTATGCCTTTTCATAAATTAAGATATATTTGTCCAAAATCCTTGTCAAACATTATTTTTATTTAAATAAAATTTTACTATCAATCTTATCTAAGTATTAAGGGTAGTGATTTTTTAAATGAATATTAAGTATTCCTAATTAAGATTTGTTATGATACAACTCTTACATAG # Right flank : AACATTCAAAGAGGCTCATCGAATCCAATCGAATTTTATCATCGCTCAGATGATTCAAAATTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCTGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGG # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2690822-2684609 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051862.1 Acinetobacter baumannii strain Ab-C102 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2690821 30 96.7 30 .............................A ATGTAAGCGGCTGGGATGAATTGGAGCAGG 2690761 30 96.7 30 ............................T. ACGTCTGAGCATATTCATCTTGTTCGAAAT 2690701 30 96.7 30 .............................A TGTATGTTTATTTTGATGCAGGCGGTAAAA 2690641 30 93.3 30 ............................TA AACATGGAATCAGATGTTAAGGCACTTGTT 2690581 30 96.7 30 .............................A GGTTCTGCGCCTTTGATTTGTTCTTCCATT 2690521 30 96.7 30 ............................G. AAGCATGCCACACTTTTAAGTGTCTCATCA 2690461 30 93.3 30 ............................TA TTCGTAAAACAGGTTCTTAATCATGGCAAG 2690401 30 100.0 30 .............................. ATGTAGAACTAAAAGCTAGTCCTGCGAAGA 2690341 30 93.3 30 ............................TG CACTTGCAGGCATTTAACATCAATCTTCAT 2690281 30 96.7 30 ............................T. TTGGCGGGTTTCCAGCTTCAAGCATGTTGT 2690221 30 100.0 30 .............................. TTCAAAAGGTAGGGACAAGATGACGGACAA 2690161 30 96.7 30 ............................T. GCCGCGAAAATTCACTTGCTATTACCAATA 2690101 30 100.0 30 .............................. AAATTTGTCCATTGTTACTTCTATCGGAAT 2690041 30 100.0 30 .............................. GCATCTTTACGCTCGAAATCCATCAGTTCT 2689981 30 93.3 30 ............................TA TGACGCTGTTGCAGCTAAAGTCATTTCCAA 2689921 30 100.0 30 .............................. TCAGGGACTAATCAGAAGCGTCGTGAGTGC 2689861 30 96.7 30 ............................G. CCAGCAATGGCAAGTCCAATGCCTTCAACT 2689801 30 93.3 30 ............................TG TTTCGAGATCAGAAATTACAGATTGTTTGA 2689741 30 100.0 30 .............................. TAAAGACCACTTTCTTTTAATTGATTACTT 2689681 30 96.7 30 ............................G. AAAAAAATCTGTAATGAAGCACTTAAAGGT 2689621 30 100.0 30 .............................. TCAGGGACTAATCAGAAGCGTCGTGAGTGC 2689561 30 93.3 30 ............................CA AAACGGATGCTACGTCATAAGGCTTTAATT 2689501 30 96.7 30 .............................A GAACTCACCATCCCCCAACTCCGCGACCTT 2689441 30 96.7 30 .............................C GAAGACGTATTTAGGTCGTACTTCACCAAT 2689381 30 93.3 30 ............................TC CACTTTCGCTTGCTGGTGCTGCCAGCAGTT 2689321 30 93.3 31 ............................TC TTTCAATCAGCTAATGCAACTACTGTTGCGG 2689260 30 96.7 30 .............................A TATTTTTTTTGTAATTACCAGTTTTCTTGG 2689200 30 96.7 30 .............................G AAACTTTATCAGAAACCCAAGTAGAACCAG 2689140 30 96.7 30 .............................G TATATTAACTGTTTTTTCGTACTTTGTATT 2689080 30 96.7 30 .............................A GCTAAAACGCCTTCAAGTTCAGCCTGAAGT 2689020 30 93.3 30 ............................GC AAGCGACTGTTGTCGTTTGGGGCTATGTAA 2688960 30 93.3 30 ............................CG TATCAGCACTACGAAACACTGTAGAGCGTC 2688900 30 100.0 30 .............................. CAGATACCGCTTGAAAAACTTCTGAATCGG 2688840 30 93.3 30 ............................TG TACGTCAAATTACTTCTTATTGTAGTTGGG 2688780 30 96.7 30 ............................T. CATCATCAAATAAATCTTCGTATTTAGTGA 2688720 30 96.7 30 .............................G AAGCGTCATGAATATTTGGTTTGGCTTGAA 2688660 30 93.3 30 ............................TG ATCATTAGTGCCTCTTCGGAAATCAACTTT 2688600 30 96.7 30 .............................A AGAGTATGTATTAGAGGGCTATGCACTTAC 2688540 30 93.3 30 ............................TG AAAATAATTAAATGGTCTATCACCGTCTTC 2688480 30 96.7 30 .............................G TAGATGCAGCACACAGCAATCAGGGCGCTC 2688420 30 96.7 30 .............................G CGCGGAAGAGCATTCGGGTGAGTTGGATTA 2688360 30 96.7 30 .............................G GCAAAAGGAACGGCTGGCTAACGCCACTAT 2688300 30 96.7 30 .............................A TAAACAGCATTTCATCAGTTGCGTAATAAA 2688240 30 93.3 30 ............................TC CAAAAGAGCAAGCAGAATTTAGTGCATGTA 2688180 30 93.3 31 ............................CA CCAACCGACAATGTAGCATCGGCAACTAAAC 2688119 30 93.3 30 ............................TA TGACACGCTATCAAGTGACGGTGCAAATAA 2688059 30 93.3 30 ............................TG ATCTCTCTTAGCTTTGTATTCAGGGTCTAA 2687999 30 93.3 30 ............................TG CTACAGATATAACTAATCAGTTAAATAACT 2687939 30 93.3 30 ............................TA TCCATTTTCTGATGGTGGCGCATTCTCTTC 2687879 30 96.7 30 .............................C AAGTTAGAGCTATTAGAAAGAATTATTTAA 2687819 30 96.7 30 ............................T. TCGGGGTGGTTTTATTTTGCCTAAATTAAT 2687759 30 96.7 30 ............................T. GTATTGTTGGGTTTCTAGTTACCAGAGCAG 2687699 30 93.3 30 ............................TG ATTCAGTAGGTGCTAACTGGTATAACTTGA 2687639 30 93.3 30 ............................CG TTGTTGGGTCTTGGTTGCGTAGTGGCCCCC 2687579 30 93.3 30 ............................TA AACCATTATTAGGGTTTACGGTATTACTTG 2687519 30 96.7 30 .............................G TCCATAAGACCCTCCATTTGTTTATATCTT 2687459 30 96.7 30 .............................G AAGGGTATAGCAAATATCGTGATGGAAATG 2687399 30 100.0 30 .............................. CATCGCCAGCAACAAACTGCAATGAGCCAG 2687339 30 96.7 30 ............................T. GGTGTGATCATCAATACAGATGGGACAGGT 2687279 30 93.3 30 ............................CG ATAGAAGATACAGAAGAAAATAATGCTATT 2687219 30 96.7 30 ............................G. CAACCAAAGAACCCCAAGCAAATCGAGCAA 2687159 30 100.0 30 .............................. TATCTAAGCGTCCCATTAGAAAACCTTTAT 2687099 30 100.0 30 .............................. GTGAACATGCATGCATTGATGCAATATGCG 2687039 30 93.3 30 ............................CC ACTGTAGTACGAGTAACGTTACCGACTAAA 2686979 30 100.0 31 .............................. GACATACAAACCCCTCAATAAAAGATGGGGC 2686918 30 96.7 30 .............................C AAATCTTGATGACATGCTCAACAAAACACA 2686858 30 96.7 30 .............................G AGGGTTATGTTTTGGTTTCTAAGGATAAGT 2686798 30 100.0 30 .............................. CATACATTAACTTTAAATAATCATTCTGAC 2686738 30 96.7 30 .............................C ATGAAAAACTAGCTTCCACGACATCAATCC 2686678 30 90.0 30 ...........T................TC TTGCTGTGCATAAGCCTGTAAGTTATTTAA 2686618 30 96.7 30 .............................G TTGCCCGGATCACGACGATCATTAGAATAA 2686558 30 96.7 30 ............................T. GGAGTCATCAATAAGAAACAATCCATTTAA 2686498 30 96.7 30 ............................T. CTGGATCTATTCCAAAGTGTTTGCAAATTT 2686438 30 100.0 30 .............................. CTAATCGATGGTGAAGATTTTGAACAAGAT 2686378 30 96.7 30 ............................G. TATCTCAATGGTGTGACTTGTTAGCACTAG 2686318 30 96.7 30 ............................T. AATGCAATTCGGAGCATGGCGTACCGAAGA 2686258 30 96.7 30 ............................T. GTGTGGACTCCTCAATCAGCATCTTGAAAT 2686198 30 93.3 30 ............................GC TCACAAGTCAAATACTATTTTGCATTATTT 2686138 30 100.0 30 .............................. CTTTTTGCTTATAGTAACAAGTAGCAGAGT 2686078 30 93.3 30 ............................GA ACTGCAATGCTGTGAGTAACGAACCTTGAT 2686018 30 96.7 30 .............................C TTACCAGACACAGCACCTTCTTGAAGCATC 2685958 30 100.0 30 .............................. GACGGTTAGTTACTTTTGATGTACCGCCAC 2685898 30 96.7 30 .............................C TAACTCACCGCGATAAATAGACGCGATACC 2685838 30 96.7 30 .............................G AGACACAGAAAAAGAATGTGAACAATGGGC 2685778 30 96.7 30 ............................G. CGATTAAATCAGTCAAAGGACCCTAAGCCA 2685718 30 93.3 30 ............................TC AAACTCACAACCTAGAAAAGATTGCTAAGG 2685658 30 100.0 30 .............................. GAAAAAGCCCCATTCGTTGTGAATAGGGCT 2685598 30 96.7 30 ............................T. GGTGTGATCATCAATACAGATGGGACAGGT 2685538 30 93.3 30 ............................TA CGAAAACAAAAGATACTCATGCACCAGAGA 2685478 30 93.3 30 ...............T.............A CAGCATTTACACCAGCAACCTTTAAAGCAG 2685418 30 93.3 30 ............................TG TTACATGCCCAATTGGTTGGCGCATGTCAT 2685358 30 96.7 30 ............................T. CTAAGCGAAGGCTAACGCTCACATTCAAAA 2685298 30 93.3 30 ............................TG TAAAACCGAATCCCAAGCTGAATAGGTTTT 2685238 30 93.3 30 ............................GG ACATGTGAGCTTCACACCATCCTTCAGGCA 2685178 30 96.7 30 ............................T. GTTGCGGCTCTCGCATGATGTGGTTTGATC 2685118 30 96.7 30 .............................A CTGAAAAGATGTTGAGTGCAGGTTGTTCTT 2685058 30 96.7 30 ............................T. GATGCTGAAAACTTCACAGCAGGCAATCCA 2684998 30 93.3 30 ............................TG TAAAGGATGTGAGGAACGTCGTGAGTGGAT 2684938 30 96.7 30 .............................A CTGACTAGTGATTTGAGGAATGTGCTCACC 2684878 30 93.3 30 ............................CA AACACAGCATTATTGGGCCTTCAATACGAT 2684818 30 93.3 30 ............................GA TGCAGGCGGAGTCTGCTATGCGACTGGTAC 2684758 30 93.3 30 .................T...........A ATAACCACGGTTATGGTAAGTCACTTTTAC 2684698 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 2684638 30 66.7 0 ...T...A...T.....T..C...AGCGT. | ========== ====== ====== ====== ============================== =============================== ================== 104 30 95.5 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACTAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAATAGACAAAGCCGAACAGCCTGCTGAAGTTGAACAGATTAAACAGTTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //