Array 1 300077-300534 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRO01000012.1 Actinomadura hibisca NBRC 15177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 300077 30 100.0 31 .............................. GGCCCTTGAAGGAGGTCTCGTTCTTGCTGAT 300138 30 96.7 31 .............................T TCATATATTGCAGCGACGTGCCACGGTAGTT 300199 30 100.0 31 .............................. GCTACGAGATCGCCCAGGCGATCGCCGACGC 300260 30 96.7 31 .............................C GGCCCGAGCAGGTCCTCCAGCAGCACGGTCC 300321 30 100.0 31 .............................. GCTACGAGATCGCCCAGGCGATCGCCGACGC 300382 30 96.7 31 .............................C GGCCCGAGCAGGTCCTCCAGCAGCACGGTCC 300443 30 96.7 31 .............................G AACCCCGCGCCAACGAACTCGGCCTCCCCGG 300504 30 96.7 0 .............................T | G [300531] ========== ====== ====== ====== ============================== =============================== ================== 8 30 97.9 31 CTGCTCCCCGCGCACGCGGGGATGGACCCA # Left flank : CAGCACCATCAGGCTCTTCAAACTCACCCAAAAACCCAGCACACCTACGATAAGCAAGCCCCCCAGCCTCAACACGAAGCAGAAAGACCTCAACCTCCACAGGCCGCCCACTCGAAGAATCAAGCCGCATCCCTGCAACGCTAGCGCTACTGCAACTAACCCGCAGTAACAACCCCAAGAGCAGCGACCCAGCTCAGCCCAACGCGCCCCACTCCGCCCTGCCCCAACCGACAAAGCATCTGTTTACAAGACAGAGTGTTGAAGCCCCCAAGCCCTCGCGCAGCCTCCCCAAGCGGCGCTCCTCTCGACAGCGAAAGAGCCTTCTCCGCTGACACAAAGAGCTACACCGCCCTAATCTGAGCGAACCGCTCCAGCTGGCCTCGGCCGCGCAACGAGGGAGGCAGTCATTGAAGCCCTTCTCCTCCCCGCCCGAAATGTCCGTCTCTCCAAAAGTGCTCACGAATCGTGTTACTCGCTGGTAGAACCCCAGGTCAGTGAGT # Right flank : TGATCTTCATGATCATGGTCCTGCTTGCCGTCGCCCGACCGTGCAGATAAGCCGACGCACGGGACCCGTATCCTCGACTACCATGCGGTGAGCCCGCGCCGGCGTAGCTCAATTGGCAGAGCATCTGTCTTGTAAACAGAAGGTTAGGGGTTCAAGTCCCCTCGCCGGCTCCAAGACCTGAGGCCCCTCTCGGACTGGGCAGGGGTCTCGCTGCTGCCAGTCGTAGGCGCACCGCCGCAGCCTAAGACGTGGTGGCCTAGTCGACGGGCGAGAAGATTCAATCTGGATTCGCTGCTCCAAGATGCCTTTGGCTTCAGTTAGCGAGGCAGCCGTTGAAGCCCTTCCCCTCTCTGCCTGAAATGTCCGTCTCTTCAAAAGTGCTCACGAATCGTGTTACTCGCTGGTAGAACCCCAGGTCAGTGAGCCTGCTCCCCGCGCACGCGGGGATGGACCCGGCATGTAGCCTCCCTTCCACGTGCCGGTCCACTGCTCCCCGCGCA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 300959-301354 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRO01000012.1 Actinomadura hibisca NBRC 15177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 300959 30 100.0 31 .............................. GCATGTAGCCTCCCTTCCACGTGCCGGTCCA 301020 30 100.0 31 .............................. CTGGGACTGCCCATTTGGATGGTGTAAAGCA 301081 30 93.3 31 ............................AC CGCGATCAAGACCAACCGGCTCGTCGACTCC 301142 30 100.0 31 .............................. TCTGGTCGGTCATCCCGCCGAGCTCGTGCCG 301203 30 93.3 31 ....................A........A CCCGCACCGGAACGCAGTAGGGCCCGTCGAC 301264 30 100.0 31 .............................. TGCGACGGTAGTAGACCGCCTGTGCCCCGGT 301325 30 76.7 0 .......T.............GC..CTTG. | ========== ====== ====== ====== ============================== =============================== ================== 7 30 94.8 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CGGGGATGGACCCGAACCCCGCGCCAACGAACTCGGCCTCCCCGGCTGCTCCCCGCGCACGCGGGGATGGACGCCTGATCTTCATGATCATGGTCCTGCTTGCCGTCGCCCGACCGTGCAGATAAGCCGACGCACGGGACCCGTATCCTCGACTACCATGCGGTGAGCCCGCGCCGGCGTAGCTCAATTGGCAGAGCATCTGTCTTGTAAACAGAAGGTTAGGGGTTCAAGTCCCCTCGCCGGCTCCAAGACCTGAGGCCCCTCTCGGACTGGGCAGGGGTCTCGCTGCTGCCAGTCGTAGGCGCACCGCCGCAGCCTAAGACGTGGTGGCCTAGTCGACGGGCGAGAAGATTCAATCTGGATTCGCTGCTCCAAGATGCCTTTGGCTTCAGTTAGCGAGGCAGCCGTTGAAGCCCTTCCCCTCTCTGCCTGAAATGTCCGTCTCTTCAAAAGTGCTCACGAATCGTGTTACTCGCTGGTAGAACCCCAGGTCAGTGAGC # Right flank : GCGGCGTTCATGCTGATGGTGGCGGCGGTCACATGTTCCTTGCGTGCGCGAGCCTGGGCGGCTCCGTTGCGCTCCTAGCATGTATCGCTGCGCTGTGTAGTGACTTTTCCGCTTTCGGCCCGCTTCGCTGAAGTTGCTGCGACCGATCTCTCCAGCGGATTTGATTCCACTGTGCTGGACGACGTGGTGGGACTGGCGCGGCTCGGGGCGAAGTTGTCCCGAGCCGCGCGTTCCGCGTGGGCTAAGCATGACGACGACAAAGGTGACTGGCTTCCGCTGTGGCGTCATCTTGCGGACAGTGGTGCCATAGCAGGGCTGCTCTGGGACGAATGGCTTCCCTTGCAGGTGCGCAATGTCTTGAGCGCTGCCTTTCCGCAAGGAGAGGACGATGCTCGGCGGCTCGTGATCTGGTCTGCGGCTACCCATGACATCGGGAAGGCGACACCCGCATTCGCCGCCCAAGTCGAAACGCTCGCCAAGAAAATGTGCGACTACGGTCT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 310627-310777 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRO01000012.1 Actinomadura hibisca NBRC 15177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 310627 29 100.0 32 ............................. TACGACCGCGAGGTGCTGGCCCGGATGGTGGA 310688 29 96.6 32 .........................A... GAGGCTCTGCGCTCCAGCGTGATGGAAGGCAA 310749 29 86.2 0 ........................AGGT. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 CTGCTCCCCGCGCACGCGGGGATGCCCCC # Left flank : CGGCATGGACGTGGAGTCCGGCCGCAACTACGCAGAGGACTTCGACTGGTGACGGTCATCATCCTCACCAACTGTCCTGCCGGCCTGCGCGGATTCCTGACGCGGTGGCTGATGGAGATCTCCCCGGGCGTCTTCATCGGCGGCCCGTCCACCCGCATCCGCGAGGCCCTGTGGGACGAAGTCCAGAAGTATGCCGACACGGGCCGCGCGCTGCTCGCCTACAGCACCAACAACGAGCAGGGCTTCACCTTCGAGACGCACGACCACAAGTGGCACCCGGTCGACCACGACGGCATCACCCTGATCCGCCGCCCCAAGAACCAGCCGACGATCGCCGCCGCAACGCCCACCACGGGCTGGAGCAAGGCAGCAAAACGCCGCCGCTACGGCAAACGCTGACACCGTTCGGACACCCTCACTCCCCGCCGGGCGAAATGTCCAACTCTCAAAAAGTGCTCACGAATCGCATTACCCGCCGGTAGACCCCCAGGTCAGCAAGC # Right flank : CAAAGAGATGCTTGTGTGCTGCGGGGATGCGTCGTCTTCGGCGTGCCTACTGGGCCTTGCGCGCCCGAATGAACTTCACTTGATCGAGCGTCGGATCACCCCTCCCCGGGACGCCGTACGGCCGCCGTAGGCATGTCTAGTAAGAGGGAGTGTGTGTCGGGGTGTTCGCTCAGCGAGGTCGGGCGGGCTTCGTCGCTGCGGTGGCAGCAGTGGTCGGGGTGGTCGTCATGGTGGCGACGGTCTTGTTCTTCACGGGGACGAGCGGGGCCGCCAGAGCCGGTGAGTCCTCGTCCAGTACTGGCGTGCGGCTGGATGTCACCAAGATTCCGGGGCTTGGTCAGAGCGGGTTCAGCGGCGCGTGGGGCACTGGCAGGACTGGGGCGTCCGGTGGCAATCAGTCCGTTGACTACAGCGACGACCCTGACGGCGTCGGGGCGTATGCGAATCTGGCGAACCCGTCCGGCAGCACGTCGGGAGACGCGCCCACCGAAGCATGGGAC # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGCCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18264-17320 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRO01000027.1 Actinomadura hibisca NBRC 15177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18263 29 100.0 32 ............................. GGCTCCTGGAGGGCGCGCCACGCGGCGTCGAG 18202 29 100.0 32 ............................. GTTGCCGGGCGGGCCCTGGACGGGCTGTCCCG 18141 29 100.0 32 ............................. CGACACCGAAGGTCCCCCAGCGGAGGACGGGT 18080 29 100.0 32 ............................. CAGCGATGACGACCCCCATGTGCCCCTCATGC 18019 29 100.0 32 ............................. AGGACGCGCTGGACATCGCCCGCGCTTTCCAA 17958 29 100.0 32 ............................. TGAGCGAAGTCATGCCAGCGGTCGCAGACGGT 17897 29 100.0 32 ............................. ACCGTGCTGGCGGCCGGGTCCGGGCCGCTGGT 17836 29 100.0 32 ............................. GGAGCGCTGGGACCCGTGCGGCAGCTCACCGG 17775 29 100.0 32 ............................. CCGTCGGCGGCGGAGGCGGCGGGGGCGGGGTT 17714 29 100.0 32 ............................. GCGCCTTGCGTGAGGGTGAGGGTGGCGACGTG 17653 29 100.0 32 ............................. AGCGTGCGGCCCGCGATCGAGTTCGGCCGACT 17592 29 100.0 32 ............................. GTCAATGCCGCGATCGAACAGCTCATGGATCT 17531 29 100.0 32 ............................. CATGGCTTTCTCCTTCGGTAGAGGGGTCAGGC 17470 29 100.0 32 ............................. ATCTACGTTGAGGACGTTGAGCAGGTCAACCG 17409 29 100.0 32 ............................. GGGTTGCGCCGCTGGGCGCTCGCGCACCGCGT 17348 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 100.0 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GCGCCGAACGCGCCGCCGACCTGGTGGTCACCGGCGACGAGGAACACGTGGCCGAGGAGGTGCGGCGCTACTTCGACGCCGGGGCGACCGAGGTCGTCTTCAGCCAGACGAACCTGACCAACGACGCCGACCGCCTCCGCACCTGGCGCCTGCTGGGCGACCTGGCCCGCTCCTGACGATCAGCAAGAGCCGCTGACACAGTCAGGACGTCATACCGGAGCCGAATCTCACTTCCCACGCCTTCTCGACGGGCGGCTCCAGTAGAAAAGAGACTCTAACCACTTGGAAGAGATCTCTTTGCTGCCATGCAGAGCAATCGACCACAGCCTGGTTCCTGATGCCCCACAGACGAGAAGCCACGACCCGAGACAGATTCATCAGGACAAGCCCCCAGCTGAGGCGGCCGTTGCCTCCCCCTCCCCCCACTGACCGAAATGTCCAAGTCTCAACAAGTGCTCACAAAACGTGTTACTCGCTGGTAGAACCCCAGGTCAGCCAGC # Right flank : TTGTGGCTACTGGCGGTACCGCCCGGAGGGGGATGCTCCCCGGGCACGCAGATGCACCTAGCGTTGTGTCCCTTGGACTGCTGCTGGCCCAGCCCCGCCCAGTCTCAACCTGTTACGAGTTCTAAGGGTGGCGCATTGTGTCAGGGGGTGGGGATTCGGGCTTGGGCGGGAGGGTGGTCGGGGCGTTGGAGTTGGGTCGGTTCTGGTAGGGCGGGCCAGTAGTGCTCGGTGAACAGGCGCGCCACCAGCTCGCCCCGGCTGGTGACGCTGACCTTCGTGAAGACCGCCTTCAGGTGGTCGCGGACCGTGTGCGGGGAGATGAACAGCGTCGCGGCGATCTCGGCGGTGGCCATGCCGCGTGCGACGAGCTGGGTGATCTGGAGTTCCCGCGACGTCAGGCCGTACGCCTCGGCGATCAGGACCGCCAGGTCGGAGGGCGCCGCCGGTTCGAGGATGAGGGCCACCGGGCCGGGCCCGCCGCCGGGGCCCGTGAGGGACGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49821-50155 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRO01000071.1 Actinomadura hibisca NBRC 15177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 49821 30 100.0 31 .............................. AAAGAAGGTAAATGCTGCTGTAAAGCAGCTC 49882 30 100.0 31 .............................. CCGTACTGCCTGCGGAGCGCCAGGCCGTAAA 49943 30 100.0 31 .............................. CGATCTGGTCGTAGGTGACGCGCGGGATGTT 50004 30 96.7 31 .............................A CGGCCGCTACCAGCGCGCCGCCTGACCCCTC 50065 30 96.7 31 .............................C GAGACCGGCAGCAAGGCACTGGAGTTCGGAG 50126 30 86.7 0 .........................TTTT. | ========== ====== ====== ====== ============================== =============================== ================== 6 30 96.7 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GAGATGACGACCCCGATCAGGAAGGTGGGGATGGCCACGATGATCCCGTCGATGATGCGTGCCACCACCCGCCGCCACCAGGGTCCGTGCCGCAGGCCCGTGCCCGATCCGTACGTCATAGCGCCCCCGATGCCCGACTGCTGATCATCTTTCGGTTACTCGCCGTGATATTGCCGGGCCGGACGGGCGGAAAACCTGCTGGTCAGCTCATGAAAATGCCTTGAAGGTATACATGCCGAGATTGAGCCTTCCCGAGATCATCCCTGGAAGGCGTCTCCGCGCGACCAGCGGCGCGATCGGCCAGCCGCTGCCCCCAGTAGGCGTGCTCCCCGCGCACACGGATGGCGACGCCGTCGCCGAACGCCGTAGCCTGAGAAGCGATGACCTACTTGACGGACGAGAAGGCAAACTCCGTTCGACGGTCGCCGCCCGAAATGTCCGTCTCTTCAAAAGTGCTCACGAATCGTGTTACTCGCCGGTAGAACACCAGGTCAGCGAGC # Right flank : GTGCAGGGAAGGTCTACGGTGCAGCGTTCTCTTTCTTCGGGCCTGACGACGCCGCGCTCGTCCCTGCCCTTCGGGCGATCTCGTCATGCAGCCGGAACAGGGACGGCATCGTCCCCCGATCGCGTTCATGCAGCACCGTCCAACACCGCGCCACCAGCCCCCGCGCCTCCGTCCCCGGCCACGGCTGCGGCAGCAGTTCCGGCGGCAGCAGCGGGTCAGGCTCCATCGCCCGCGTCAGCTCCGCCGCCAGTTCCACCGCCATCGTCAGCAACTCCGCCGAACCGATCTCCCCAGGCCCAGCCAGCCGCTCCCACCGAGGACGGGCAACGGCACCCAGCCGCTCATAGCGAGCCGCGATCTCCTGCACCGGCCACAACCCCCGAGCCAGCTCCACCGGATCGCTCGTCTCACCCCGGCGCAGATCCGTGCTGGTCATCAGCGTCAGCGCGTCATGCACCCCCAGCCGTCGCGCCTCGTCCTCTACATACGGCTCCCACGCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108620-109198 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRO01000040.1 Actinomadura hibisca NBRC 15177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 108620 30 96.7 31 .............................C GTTCGGTCTCCTCGGCGACGGCGTAGACGTC 108681 30 100.0 31 .............................. AGGGATGCACGGCTAGGTCAGCCGTAGATCA 108742 30 96.7 31 .............................C AAACCTGCCTACCCTCACCGCCGACGTGCCG 108803 30 96.7 31 .............................G TGCCCTGCACCTCCAGGCGCGTGGACTGGAC 108864 30 96.7 31 .............................C GTTCCCGCCTACGTGGTCTTCCAGACCGACG 108925 30 100.0 31 .............................. CATCGGCCACGAACGCGTCGGCACGGACTAC 108986 30 96.7 31 .............................G GCCCGTCCTCGACGTCGGCCTGGCCCTCGGC 109047 30 96.7 31 .........T.................... ACGCCGTCAACCCCTCGAGCACGGGCCGTTC 109108 30 100.0 31 .............................. ATGCCGGGGTCATCGCGCGGCACCCGTTCAT 109169 29 90.0 0 .....................G.-.....G | G [109196] ========== ====== ====== ====== ============================== =============================== ================== 10 30 97.0 31 CTGCTCCCCGCGCACGCGGGGATGGACCCA # Left flank : TTCGTGCGTGGATACCGCTGTGGTGTGGGGTGTTGGCGGGCCCGATCTTCACCTGACTTGGCTCGCGGAAAGGGTGATGCGCGCTGATTACGACCAGCTGCGGCATCCGGTGAACTCGCTGGCCTTGGGCGGCCGGGGTTGGATGCAGACCCTGAACTTCCTCGTGGCCGCCGCGCTGACGATTGCTTTCGCCATCGGCGTGCACCGCGCGTCGCGACGCTCGGCATGGGGCCCGGTGGCTCTTGGAAACGGGCGGGTCGGCGGCACTACCCGCCGGGCCTAGGTGCAACTAGATATCGCGCTCATGACCCTTTATGTGCCTGTCTGCTCAACGACGCAATTCCGGCCAGCGCAGGCTGAACGCCGTATCCTGAGGCGTGATGAGTGACTTGGCGGATGAGGGAGCAGGCGCTGCTCGGCTGTCGCCGCCCAAAATGTCCGGCTCTCCAAAAGTGCTCACGAATCGTGTTACTCGCTGGTAGAGCCCCAGCTCAGCGAGT # Right flank : GTTCCTGTCCCGTCCACTGACGCGGTGACAGCGGCTCCAGCGACTCCCACTCGGCAGCGGTCAGCTCACGGGCGACCCGCCGTGCTTCAAGGGCGATATGAACCAGAAAGCCCGTCCTTCGACGGCACCACCTAGGGCTTCCTCGCGACGCCGCCTACGCCGTCCACGTTCTCGGCGCCTATGTGGCCGAGGTCCGGCCGCCACTCCGGCAGCGGGACGATCCCGGGCTCTACCGGCTCCAGGTCCTCGAAGAATCCCTCGATCTCTTCGGGCGTGCGCAGCAGGTAGGGGACCGCGCCGGTGTCGTCGTAGCCCTGCTGGGCCTCGTTCAAGGCCGGGTTCGTGTTCGTGCCGTCGTTGAGCGCCAGGTAGCTGCCGGACGGAAGGACGTCCATCAGGCGGCGCACGATCGAGCGCGCCTCGTCGTAGTCGGTGATGTGCCCGAGCACGCCCATGAACAGCAGCCCGACCGGCTGGGAGAAGTCCAGGATCTTCGCGGC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112652-113230 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRO01000040.1 Actinomadura hibisca NBRC 15177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 112652 30 96.7 31 .............................T CGTGGCCTTCCTTGGTGATGCCGATCGGCTT 112713 30 96.7 31 .............................G CCGCCCGCAAGCTTGGCCCGCTACCCGGTGT 112774 30 100.0 31 .............................. CGATCTGCCCGCCGGTCGTCTCGTTGATCAG 112835 30 96.7 31 .............................C CCTTGGCGCCGACGGTGATGTTGTCGGTATT 112896 30 96.7 31 ..............T............... CTGCTCCACCGAACAGCAACCCGTCCACCTG 112957 30 96.7 31 .............................G CGTTCGCGAAATTCAGCCGAAAAGCGTGGGA 113018 30 96.7 31 ...........A.................. TCGACCCGACCGACGGGTCGGACTGGGTGAA 113079 30 100.0 31 .............................. GGCACTCGCGCGGGGCGACCGGGCCCAGCAG 113140 30 93.3 31 ..........T..................C CGAACCCGGGCGGCAGGACAACGCGGGCGCT 113201 30 76.7 0 ....................CGG...TGGT | ========== ====== ====== ====== ============================== =============================== ================== 10 30 95.0 31 CTGCTCCCCGCGCACGCGGGGATGGACCCA # Left flank : TTGGCGGGCGAGGTGACGCGGCTTCGGCTGCGGATGGCGATGCATGTGGGTGACGTGCAGCGGGATGAGCATGGGCTGATCGGGCGTGCGGTGATTCATTTGCATCGGCTGCTGGAGGCGGAGGCGTTCAAGCGTGTGTTGGCGGCGACGCCGGATGCCGATCTGGGGATGCTGGTCTCCGATGAGCTCTACCGTTCCGGGTTGGAGAGCGGGGTCATCGACGAGGACGCCTATGCGTCTTTGCGGGTCTTGTGCAAGGAGACGCGGGGCAAGGCGTATCTGTGGCTGCCGCCGAGGTTTGCGGGACGGTAGCCGCATGTGCCTGGGGCGTCCGGGTTAGCTTCGCGCCGTCTGGGCGGCACGTCGTAGCCTGAGGCGTGATGAGTGACTTGGCGGGCGAGAGAACAGACGTTGCTCGACTGCCACTGTCTGAAATGTCCGTCTCTTTAAAAGTGCTCACGAATCGTGTTACTCGCTGGTAGAGCCCCAGGTCAGGGAGC # Right flank : TTTCTGAGGGGTGTGGGTGCCGGGCTTGAAAGCTGTGTGCGGTGAGAGAGGCAGGGCGTAGGGACTGTCTGAGAGACGCTGGTTGCCTAGTGGAAGGTCCAGTAGCGCGTTGTTCCCGCTCCGCTTGTTGTCGCGAAGCTTTGGCCGTCTGGGGCGAACACGATGGTCTGGTAGCTGTCGGTGTCGCCGGGCAGCGTCGCCGTGTTGCGGCGGGTTGGGACGTGCCACAGGCGGATGTTCTTCTCGTCCGCGCTCACCAGCGTGTCGCCGTCCGGGCTGAACACCAGGGCCTTGATCTCGCCCTCGACGCCTTTCAGGGAGGCGCGGAGGTCACCGTCGGATGCGTCACGGAGTTCTACCGCCCAGTGGCTGCCGTTGGAGAGTGCGATGGTCTCGCCGTCGGGGCTGAACGCCAGGCAGGGGATTGAGCTGGCGGATTCGGAGGAGATCGCGTTGCCCTTGCCGGTGGCGATGTTCCAGCACGTCAGGCGGCCTGACAG # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 117519-118035 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRO01000040.1 Actinomadura hibisca NBRC 15177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 117519 30 100.0 31 .............................. AGCGCGTACCCGTACCAGTCCCGGCCCGGGT 117580 30 100.0 31 .............................. GATACATGTCGGCGGGCTCCTAGCTCTCGGG 117641 30 100.0 31 .............................. AGGCTGTGCGCTTGGCGGAGGCCGCTGAGTA 117702 30 100.0 31 .............................. CCGAGCCGATGGCTCTGATCACGTTCGCGGA 117763 30 96.7 31 .............................C GCAGCGGCGGCGCGATCAAGGGCAACCGCTT 117824 30 100.0 31 .............................. GCCGGACTGCCGACGGGCTACGGAGGAAACC 117885 30 96.7 31 .........G.................... TACTGTTCAGGGACTGGGTCATGAAGAAATG 117946 30 93.3 31 .........G...................C TGGTCCATCGAGTATGTGCCTCTTCTTCAGG 118007 29 86.7 0 .........G...............-.T.T | ========== ====== ====== ====== ============================== =============================== ================== 9 30 97.0 31 CTGCTCCCCACGCACGCGGGGATGGACCCG # Left flank : GAGACGCCGAGGAAGACCTGCCCCATGCCACCTGCGCCGAGTCGCGCTTCTAGCTGGTAGGGGCCGACCCGTTGGGGGTCGCTGGCATGTAGAGGTTCCACAGGGTCACCCGCCGTTGGGCTCGGAAGCGTCCCCGGTTTTCTAGCAGACAGGGATGTTCTTTCAACACCTTGTTGCTGTTGGTGTGATGCAGTGCATGGAGGTGGCGGTGGAGGGTGTCGGGCTGGTGCGCTTGCCGCTCTTGCTTGACGTCGGCTCGGCTGTCAACGCGCCCGGACCAGTTCGCGACCAGAGACGGGCCACGACTGGGGCGGCACAACAAGTTGGGCTAGCCCCAGCCAGACGCCGTACTCTGAGGCGCGATGACCTACCTGACTTGCCTGACCCACCTGGCGGACGGGAAGACGAACACCGTACAACTGTCGCTGCCCGAAATGTCCGTCTCTCCAAAAGTGCTCACGAATCGTGTTACTCGCTGGTAGAACCCCAGGTCAGCGAGT # Right flank : TAGAGGTCGTGGGTGCCGTGCTTGACGGCGGTGATGAAGGCGGCCCAGGTGGTGGAGGGCATGGCGAGGACAGAGCCGTGCGGGTCCTTGGAGTCGCGAGCCAGGTGGAAGTGCTGGACGGCCGCCACCTCTACGCACTGATCGGTGGCCTGCTGACTGTGGCTGCTCTTCGTCCACTGGGCATGGCTGAAGTCCGGGCTCATCATGGCCGCCTCTTTTCAGCTCGTCCGTACAGGTCGGTGGCAGATCCGACCAGCTCCATAGAAGTAGCCGGGGCTAGGGCTACCGCGCGCAAGTGCTCAAATGCGACGTTAGAGCGTGAACGTTGCCATGTCGATTGAGATAGGGGCCCCGGTGGCGGTGACTTACCTGGCGGACGGGAAGGCGAACACCGCCCAACTGTCGCTGCCTGAAATGTCTGTCTCTTTAAAAGTGCTCGCGAATCGTGTTACTCGCTGGTAGAACCGCAGGTCAGTGAGCCTGCTCCCCGCGCACGCGGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACGCACGCGGGGATGGACCCG # Alternate repeat : CTGCTCCCCGCGCACGCGGGGATGGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 118515-118788 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRO01000040.1 Actinomadura hibisca NBRC 15177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 118515 30 96.7 31 ............................G. CATGGGCATGCCCGAACCGGCGGAGGCCATG 118576 30 100.0 31 .............................. CGGTCTCCCACATCCAGCCGCAGTGGCAGTG 118637 30 96.7 31 ..........................T... AAACGGCCCGCCCCTCCCGAAGGAGGAGCGG 118698 30 96.7 31 .............................C GGAACCGACCGGTAGGCAACAGCTCCAGCGT G [118719] 118760 29 73.3 0 ....-..T....TG...........CTTA. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 92.7 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CGCGCACGCGGGGATGGCTCTAGAGGTCGTGGGTGCCGTGCTTGACGGCGGTGATGAAGGCGGCCCAGGTGGTGGAGGGCATGGCGAGGACAGAGCCGTGCGGGTCCTTGGAGTCGCGAGCCAGGTGGAAGTGCTGGACGGCCGCCACCTCTACGCACTGATCGGTGGCCTGCTGACTGTGGCTGCTCTTCGTCCACTGGGCATGGCTGAAGTCCGGGCTCATCATGGCCGCCTCTTTTCAGCTCGTCCGTACAGGTCGGTGGCAGATCCGACCAGCTCCATAGAAGTAGCCGGGGCTAGGGCTACCGCGCGCAAGTGCTCAAATGCGACGTTAGAGCGTGAACGTTGCCATGTCGATTGAGATAGGGGCCCCGGTGGCGGTGACTTACCTGGCGGACGGGAAGGCGAACACCGCCCAACTGTCGCTGCCTGAAATGTCTGTCTCTTTAAAAGTGCTCGCGAATCGTGTTACTCGCTGGTAGAACCGCAGGTCAGTGAGC # Right flank : GAGGTCGTAGACGCCGTGTTTGATGTTCGTGATGAGGGTGGCCCAAGTGGCGGAAGGCATGGTGAGGACGGGGCCGTTGGGGTTCTTGGAGTCGCGGGCTAGATGGAGGTGGTGCTGGATCACGGACACTTCGACACAGTCAGAGCCCTCGGCGGAACTGTGCGAGCTCTTGCGCCATCGGGGCTGGGGGGCTTTGAGCATTTTCATTCAGGCATACTCCTCAACGGCTGCAGCGATGAGGTCCACCGATTCGCCAGGCGGCAGGGCCGCATCGCAAATCAGACCGAATCTCCTTTGGAGCCTATCCACTTCCCGTGTGCTCTCCACATAGAGCTCGCCGCCGTGGGACTCGATGTAAGCGATGGCGGGATCATCCGGGTCGCTGTACTCGAGAAGTACGAGAGAACCTCCCAGGCCAGCGTGCACGCCTGTAGAGAAGGGGAGAACCTGGAGAGTGATGTTGGGGCGCTTGTTCGCTGAGACCAGAGCTGTCAGTTGCT # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43369-41630 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRO01000010.1 Actinomadura hibisca NBRC 15177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43368 29 100.0 32 ............................. CACCCGCTGGAGCTGCGACCCGGCGACATCAT 43307 29 100.0 32 ............................. GCCGTGGCCCGCGCGCTGCCCCGGGCGCTGGA 43246 29 100.0 32 ............................. ACCACCAGGTGACGCCCGAGCGCTGCAATCAG 43185 29 100.0 32 ............................. TACTCGGTCGTACTGCCGACCAGGGCCTTGTC 43124 29 100.0 32 ............................. CCGTCGTCGGACGGGTCCAGGCCCTTGGTCGC 43063 29 100.0 32 ............................. GCCGTAGACAAGGTGATGGCGGCCGCCGTCGC 43002 29 100.0 32 ............................. GAGATCGGTCGGTGTCCATCCGGCTTGCCACC 42941 29 100.0 32 ............................. AGCATCAGCGACAAGATCAGGGCAGGCGCTCG 42880 29 96.6 31 ............................C GGCCCCCCGCCACACCCACACCCCCGGCCGC 42820 29 100.0 32 ............................. CCGCCGATGATGCCGCCGCCCGCGAGCGCCTG 42759 29 100.0 32 ............................. ACGTCCGGGACGTGGCCGCCCCGCGCGACGTC 42698 29 100.0 33 ............................. GGTGGCGGTTGCGCCAGCAGGTGACGCGGCAGG 42636 29 100.0 32 ............................. GCCCTAGGCGTGCGGGTCCCGCTGACCGAGCA 42575 29 100.0 32 ............................. CCCCAGAGCCAGCCGTTTCGCCAGGTCATCAC 42514 29 100.0 32 ............................. GCTCACCATCGAAGCCGCCTCCTGACCCGACC 42453 29 100.0 32 ............................. CAGAGGGCCGGGAGCTGCGAACTCCCGGCCCT 42392 29 100.0 32 ............................. AGACATGCGGGGACTGCATGTGCTGCAGCTCC 42331 29 100.0 31 ............................. TTGCCCCCCCAGCGCGCGCGGCCGCTCGTGG 42271 29 100.0 32 ............................. CGATCGCCAATCGCATCCGCTCATGGGACGGC 42210 29 100.0 32 ............................. GTGGACGACTCGTTCCACTCCAACCCCAAGGT 42149 29 100.0 33 ............................. CCCGCAGGGACCACGACCGGCGACGTCCTCTAC 42087 29 100.0 32 ............................. GTGGTTTCGTCACACTGGCCTCCACCTGCGGA 42026 29 100.0 32 ............................. TTGGCGCCGGCGCCGCGCTGCGTCACCTTCAG 41965 29 100.0 33 ............................. ATCTCGGTGAAGAAGCCGGGGTCGCTGTCTTCG 41903 29 100.0 32 ............................. CCCGAGGTCACGGCCGAACAGTGGGCGCGGGT 41842 29 96.6 32 ........................A.... AGAACGAGACTCCCCTGCCCGAGGCCCGGGTG 41781 29 96.6 32 .....................A....... TCGGTGACGTTGGTGCCGAACCCCAGGCGCGG 41720 29 93.1 33 ............T....A........... GCGATGGATGCGGCGTACCCGCAGCACACCGAC 41658 29 93.1 0 ..........................TT. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.2 32 GTTCTCTCCGCGCAGGCGGAGGTGGTCCG # Left flank : GGCATCCTCTTCTGCTCGGCCCACCGCCCGTTCCCGTCCATCACACAAGCCACATGCCGCGGTAATCCTGTAGCCATCACCCCTCCCGCACAGATGATTACACAGTGCAATCAGCCACGCGAGGTCTTCAACGAATCTTCAACGGGAAGGGGCGCGATCAGGACTGGATGAAAAGCAGGACCGTTGCCTACTTCGGCTCTTCTCGCGGCGAATGGCCGACAGTCGATCATGCCGTGGTGCGGATGGCCGGTCACCACATCGAGCCGGCACAGCCCGCCGACGTTTTGTCCTAACGGAACGCTGCTCGCGATCACTCCCAGACATCGCCGCACTCCTGGGATGAGGCTGAGGCTGAGGCTTCCGACCGTACCGACCACATCAGAGGCCACTGACAGAATCGCTCTCTATGCCCTAGCCTCCCCGCATGTCACCTCCGACCGTCACCCTAATACCAAGGTCTCAAATCAGTAACGCCCCGATATAAGCCCAGGTCGCGAAGT # Right flank : GCGCGCAAGGACGTCGTGGTCGCGGTGTGCACGGTGCTGGTGGTCTGGGTGATGGGTCCGGCTACGACGACGCGGCCCGGAGATCGTCTCCGGGCCGCGTGTGTTTGGGCTGTTACCTCGTCAGGACCATCAGGGTGAAGAAGCCCGTGTACTCGCAGAAGTACGACAGGTAGGTGCCGTTACGCCGCAGTTCCGCACCCTTCGCCTTGCACTTCGCCTCCGACGAGTAGTCGCCGTACTTGATCCAGGTGGAGGCCGGGGCCGCCGAGGCGGCGGGGGCCGCCAGCGTCGTTCCGGCCGTCGCCAGGGTGACCGCCGCGAACGACGTCGCGGCCAGTCGGCCGAGCTTGGTGGGCATGAGCCATCCCTTCGGGGTGGGGGGTCGGCTGCTCCCGGCGAGACGAGGATCGGACTCGCCGGGATCATGATCATATGTCCCGTGTACCCGGGCGAGGGATGATCAACACGTGTGTTCGCGATCTTCGTTCGGTGGCTTGGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTCCGCGCAGGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47342-46154 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRO01000010.1 Actinomadura hibisca NBRC 15177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47341 29 100.0 32 ............................. TTCAGCGTGCCGACCGCGGCTTTGGCGCCGCC 47280 29 100.0 32 ............................. ACCCGATCCTGATCATCACCGCCGAGGGCACG 47219 29 100.0 32 ............................. ATCCCCGCCACGCCGGTCAGGGTCCGGCCGCC 47158 29 100.0 32 ............................. CGCGCCCGTTGGTGTCGAGCGCGGTACGCCCG 47097 29 100.0 32 ............................. ATCACGGCCGCATCGTGCGACACCGCCTCACA 47036 29 100.0 32 ............................. TGCCTTAACGGCGTTCTCGTGTGACTCACGGT 46975 29 100.0 32 ............................. CAGGTCGACCGCGACACCGGCGAGGTGAAACC 46914 29 100.0 32 ............................. CTGACACCGGCCAGGGGGAAGCTTCCCGCGAA 46853 29 100.0 32 ............................. ATGACGGCGAGCGAGTCAACCACGGCCGGCTC 46792 29 100.0 32 ............................. GTGAGCGGCGGCGGTCACTACGCCATGCAGCA 46731 29 100.0 32 ............................. CTCGGGCCGCTCCCCATGGGGGTGTGGCTGCT 46670 29 100.0 32 ............................. CCGGGTCTCGTGGGGCTGCACAGCGCGGGCGC 46609 29 100.0 32 ............................. TTCTTGCACGCGATACGTGATCGCGTTGACCT 46548 29 100.0 32 ............................. GCCCCAGGTCATTGAGGGCAAACCCCCACGAC 46487 29 100.0 32 ............................. CGCCATGGCCAAGCCCACGATCCGCTACACCA 46426 29 96.6 32 .............C............... TTGCCCCCCAAGCCCGCGCGCGCCCCCTGGTG 46365 29 100.0 32 ............................. TGGCGGCCGGTGTGCTCGACGTCCTCCAGACC 46304 29 100.0 32 ............................. GTCTCGGCGGTGCCCACCGCCATCTCGCTGGC 46243 29 100.0 32 ............................. CCCTCGGCCTTGAGGACTCCGGCGGCGTTCTG 46182 29 93.1 0 ........................A...C | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTTCTCTCCGCGCGAGCGGAGGTGGTCCG # Left flank : TTGCTCAGACCTATCGCGGCTGGCTCTATCAGCATGGCGCGGGCGGTCGCCTGCAACGCCGCATCTCCGAACTGCTCAACCACGCCACCGGCATGATCTTCCAGGCGCCGGACGGGAAACTGCGCTTGGCGCTGCTGGACGCTACGGCCGACGTCACCAACCTCGCCGCTTACACGCAGCAGCACTATGTGCCGACGTTGTAGGCCGCGCGCCGCCGACGATGCCTTGGTCGACCATGCCGTGGTGCGGATGACCGGTCATCGCATCGAGCTGGCGCAGCCTGCCGACGTCCTGTCCTATCTGAATGCTGCCTGCGATCGCTCTCAGACGTCGCCGAACTCCTGGGATGAGTCTGAGGTCCTCACCGCACCGGCTGCGTCAGGGGCGACTGACAGAATCGCTCGCCATGCCTTAGCCTCCCCGCATGTTACCTCCGACCGCCGCCCCAGCATCAAGGTCTCAAATCAATAACGCCCACATATAAGCCCAGGTCGTGAAGG # Right flank : TCATGGGTTACCGGTAAGCAGCGCGGATAGTTCGTTCTCCTGGTCCGCGCTGCGGACTGACCACGGCGCCCAACCAGCGCCACCAACCGCAGCACGTCGACAGGACCTGAGAGGTCCCGATGGCAGTCGTGCAGATTGACTTCATCAATCTGCACGACTGCCATGCCAACACCAACTACATCGGAGGCTCCCTGGCGGCTAGGCGCTGGTGAGGAGGTTGTCGTAGGCCGTGGAGCCGGTGCGGCCAGTCATGAAGGAGAGGAATTCGGCGACGAACGCGCCGGACGTGATGTCGCCCGTGGTGGTCGTCTGGACGTCGCGGTGGAAGCCGGAGCGGAAGAGCTGGCGGTACTCCTCGGGGGAGATCGTGCCGCTGCCGTCGGTGTCGGCGGTCTCGAACAGGACCTCGGCGACGTGGGCCAGCGCGGGGCCGGACAGGGCACCGGCGCCTGCGGCGAACTCCGCGCGGGTGACGACCTCGTCCCCATCGGTGTCCATGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTCCGCGCGAGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTCCGCGCGAGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 54878-54422 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRO01000010.1 Actinomadura hibisca NBRC 15177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54877 29 100.0 32 ............................. GCGTAACTCCGTGGCTGACCACACCGCACCCC 54816 29 100.0 32 ............................. TGGTCCTCCAGCGACTGACGGCCCGGGACGTG 54755 29 100.0 32 ............................. TTCAACGCCCAGTTCAGGCAGGAGTTCCTGGA 54694 29 96.6 32 .......................A..... ATAGGCGCGCTTGTCTTCCCCAACACCACGGG 54633 29 100.0 32 ............................. GGTCCGCCTGCTTTGCCGGTACCGATCAGAGT 54572 29 100.0 32 ............................. ACCGACCTGGCCGCCATCGCGGCCGAGCGAGC 54511 29 100.0 32 ............................. ATGTCGGGGCTGCTCAATCCCTCGGTGAGACG 54450 29 82.8 0 ..........T..AG.T..........T. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 GTTCTCTCCGCGCGAGCGGAGGTGGTCCG # Left flank : CGACGCGGGTCCGCATACACCGTATTCGGGCGCCTCACGAAGCAATGCTTCGTAGGGCTTCTTGGCCAGCACCTGGAAGGAGGGCGACACCTTGCCGATGTCGTGCAAGCCGCCCCAGAAGCAGATCAGCCTCCGCATGTCCTCTTTGGCTCCGGTCGGCGTCGTCTGCGCCAAGGCTGGGATGCCGGGAGCCCACACGTCGTAGAGGGCGCCGACGATTGCTGCCGTGTCGATGAGGTGGCACAGCACCGGGTAGGGGCGGGGAAGACCGCATTCCTTGCCCCACAATCGTGCGTCTGGATCAGGCTGCTCGCGATCACTCTCAGACATCGCCGAACTCCTGGGATGAGGCTGAGGTTCCTGACCGTACCGACTACATCAGGGACCACTGACAGAATTGTTCTCCAGGTCTTAACCTCTCCGCATGTCATCTCCGATCGCCATCCCAGCATCAAGGTCTCAAATCGGTAACGCCCGGATATAAGCCCAGGTCGCGAAGG # Right flank : GAGTCAGTTAGCGCACACGCCTAAGGTTGTTGCGGAGGAACACCTACGCTTGATGCCCTCCAGCAGCATGGGCGTCGGCCAGCCCCGCCGTGCCACCACACCCGTCCGCGTCGGAGCGTTATGTTAAGTGAGGTACGGATGCGCTGATCCGGCCTTGCTCACCGTAGTGACCGGATCAGCACATCGAAGCGAGGCGCGTCGGGCCACGATGGACGAAGACGCCCTGCCTTCTTCCACCCCCACGCGGCGTACGCGCGGTTGGCCACCTCGTTGTCAGGTTCCACCAGCAGCGTCGCCCGTGCCTCGTGGCGGCCGCGCAGCAGTTCGTCATGCAGAGCCCGCGCCACTCCTCGGCCCTGCCACGTCTGGCGCACCATGATCTCCGACAGCGCGAACGTCCGGGTGCCGGTCTCCTCGGTAAACCCTGGTTCGGGTATCTCCTCCAGCCCCTGCCACCAACTGGCATTCGGGCTCAGAGGCCACCCCCAGGTCTGCCCAAC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTCCGCGCGAGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTCCGCGCGAGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 64834-64249 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRO01000010.1 Actinomadura hibisca NBRC 15177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 64833 29 100.0 32 ............................. TCCACCGACCCGGTATCGACGCTGGTGAGGTC 64772 29 100.0 32 ............................. TCCTTCCAGGACAGGTGGCCAGCGCCGTACTC 64711 29 96.6 32 ............................A CGCGGAAGGCGCGCGGCCGGACCGGCGCCCCC 64650 29 100.0 32 ............................. ATCGCCGCCGAGCTGGCCGAGGCCTCGGGTCA 64589 29 100.0 32 ............................. CTCACGGTGGAGATGACCCCGGACGAACACGA 64528 29 100.0 39 ............................. ATCAGGACGAATGACTGTGCGGCCAGGTACAAGGGTTCG 64460 29 100.0 32 ............................. CACCTGGAGACCGGCCCCCCGCCCCTGCCCCT 64399 29 100.0 32 ............................. GCCCAGTTCCAGTACAGCCTGGTCGGCGAGTA 64338 29 100.0 32 ............................. GCGCTGCTCCGCGGCCTGCTCGCCGAGCGGCT 64277 29 82.8 0 ...T................A...AG..T | ========== ====== ====== ====== ============================= ======================================= ================== 10 29 97.9 33 GTTCTCTCCGCGCGAGCGGAGGTGGTCCG # Left flank : ATGGGCGTCGACAGCGGAGTGATGATTATCGTTGCGGTTGAGTCGGCCAGTACGCCAGCGGCTGCGATCATTACGAAGAGGGGATTATTTTACAACCAAGGTGCTTTACATAGTAAGGCAAGATCAAAGAAGCCTACGCACCCGTTCCACCGCACTGCAGCTTTCATCCTCGAGATTTCCGCGATCACAAGATTCCTGAGCGTTCAAACCAATGGGGCCGACGACGGCTCCACATCTACCCGATTGAACACGCCGCTAACTAAGGCATCGACAGGTGAACCCCCTGCTGTCAGACCGGTAGTCGCAACTTCACCACCGCCTCCCACCAGGCGACGGAGCGCACCCTAACTAGCTGATGCCCCGCCACCCACTCCGATGCTTTCAATCACCAGGCGATAGCCCTCCCCTCGCCAGGCCATAAGCTATGGCTATGTCACAGCCACCCTCGACTAGCAGGTCACAAATCGGTAATGCCCCTCAATAAGTGCAGGTCGGCAAGG # Right flank : GCTCTGTCGGGAGGCTACTTGTTGATTTGCGGCGACTTATGGTTTTGCTGATTCATCGTCTGGTTCAGCAGGGTTGAGGGCGATGAGGGTGAGGCCGTCGAAGTCGATGGGGATGCGGCGGCGCTGGCCCGCCGTATGGATGGTGAATCCCTGTTCGTTGGCGTCGGGGTGTAGCAGTATCGCTGCTCCGTCGTTGATGGATGCGGCGACGGCTGTCCATAGTTCGGTGCGGACGCGGGCCGAGAGGGTGCCGACGTAGAGGCCCGGCATGGGTTCGGTCATCCAGCGTGTCAGCGCGCCGCGCAGGTGGTCCGGAACGGCGGTTGTCGCGATGACGGTCATCGTCGCCATGTCAGTCCTGGCTGTAGTTGGTGCCGCCGGCGAGTCTTCCGAGGTCGGGATCCCAGAGGTCGACGAGTTCTTCGGACGCCTCTTCGGCGTCTTCCTCGCGGGTGCCGTCATCAGGATCTAGAAGCGTCTGGATGTCGGCGACGATGCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTCCGCGCGAGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTCCGCGCGAGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //