Array 1 76195-79283 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYNI01000002.1 Photobacterium kishitanii strain ckamo.1.1 CFSAN065465_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76195 28 100.0 32 ............................ GACTTGAAGACTTGACGCAATAAGTTGGTTTT 76255 28 100.0 32 ............................ AAGAGATAATGCAGCAGGGAAGCGCACAGCCA 76315 28 100.0 32 ............................ AAACTGGATATGACCACCTGTGAAGCCATTGT 76375 28 100.0 32 ............................ ATATCCTTTACATCACGATGAATCTTTTTATT 76435 28 100.0 32 ............................ TTAACGTAAATGCTATCGGAAGCGTTCCTTGT 76495 28 100.0 32 ............................ TCGCTTTCATCTGTTCCCTTAACGACATAAAA 76555 28 100.0 32 ............................ AAATCACCGACCGAACCGACTACATCAGACAC 76615 28 100.0 32 ............................ AGAACCAGCGAGAATGGACTCATTAATAGTAT 76675 28 100.0 32 ............................ ATAATGCCGATGCATAGACAGGAACTCTAACA 76735 28 100.0 33 ............................ GACCAAGACCCCGAGTCTTAGTTGGATCGGATG 76796 28 100.0 32 ............................ GTTCTATTTTCAGCATCAAGAAGTACTTTCTC 76856 28 100.0 32 ............................ ATACACGGGTAAAAATATCAGTGGTATTAATC 76916 28 100.0 32 ............................ TTACGTACTGCATCTAACTGGGTAGCGTAGCT 76976 28 100.0 32 ............................ GCCATCAAGGAGCGTAGAGAGGCCAACTACGT 77036 28 100.0 32 ............................ TAAACGAATAGGTGTTTGTTGATACTGTGCCG 77096 28 100.0 32 ............................ ATGAGTGTGCGTGACTTCGGGTTCTTAGCGAA 77156 28 100.0 32 ............................ GGTTACATTTTTATATAGCGATTCCAAATTCA 77216 28 100.0 32 ............................ AATTAAATCATTGATTCCCCCTGGTGGGTTGC 77276 28 100.0 32 ............................ GTCAATTGATCGCTTAACTTCTAATTGCTCCT 77336 28 100.0 32 ............................ ACAATATCTACATAATAACGCACCCGCTTGGT 77396 28 100.0 32 ............................ CAGCGATACCTTAATTGCATTTCGATTCTTAA 77456 28 100.0 32 ............................ TATGCCCGTGATCGTTACTTCAAAGTAATGTT 77516 28 100.0 32 ............................ ATAAAGACGATAAAAATAATCCTCACGGCACG 77576 28 100.0 32 ............................ GAACTTCAAAAGAACAAACATGGCCAACAATA 77636 28 100.0 32 ............................ GTTAAATTCAAATGGATAAAGCAATCTATTAT 77696 28 100.0 32 ............................ TGTCAAAGTGTCAGGATTTGGACTGGAAATAG 77756 28 100.0 32 ............................ TTTGATACATCAAGCGTGTTTTTCTTTGTTGC 77816 28 100.0 32 ............................ ATCAACTTTTCGGCATTAGCATTATGAGAATT 77876 28 100.0 32 ............................ AGAGAATTTCGGTATTGTTGTTACTCAAACAT 77936 28 100.0 32 ............................ CTCCGCCTGTTGAGTGGTGTCTATATTCACTG 77996 28 100.0 32 ............................ TTGACCAACTGCAAACCATCCCGCTTAGCTTG 78056 28 100.0 32 ............................ TATTGCCAGTGGTCAAATATCGCTTATATCAG 78116 28 100.0 32 ............................ GCGAGGAACCGAATCAGATTGCCAAGTTTTAA 78176 28 100.0 32 ............................ AGGGAATAGTTCGACTTTATTACCGTTAGCTA 78236 28 100.0 32 ............................ TTCTGATTCTTTGGTTTTAATTTTCGCTTCAG 78296 28 100.0 32 ............................ ATATATAAACCAATTCCACTTGAGATAGTGGA 78356 28 100.0 32 ............................ AAAAGAGGCTGGAGGCTCGGCCGTCGCACAGC 78416 28 96.4 32 .............T.............. TGTACATAATGCAAATATACATCATCAAAAAT 78476 28 100.0 33 ............................ ACACAAGCGGCTGATTGCTATTCATGTAATTAA 78537 28 100.0 33 ............................ ACACAAGCGGCTGATTGCTATTCATGTAATTAA 78598 28 100.0 32 ............................ TCGGGGCGTTAGTCGTAGTTGGGTCATCACTC 78658 28 100.0 32 ............................ AAAGCCTTAACGGATCCATCGCCAATATTAAA 78718 28 100.0 32 ............................ ATTAGTTGGAGTTGCCACCGGAGCGCAATCGA 78778 28 100.0 32 ............................ AATTTGTAAATATTTCACTATTGAGTTTGATT 78838 28 100.0 32 ............................ CGATTGGGATAGTTAAACAAGTTATACGTAAA 78898 28 100.0 32 ............................ TACAACTCAACAGGCACTAACTTTGCTAGTCG 78958 28 100.0 32 ............................ TAAAGAAACCCGTATGAAAAAAACTGATAGCT 79018 28 100.0 32 ............................ TGTTGAATCTGAAAACTTACCCAAGGCATCAA 79078 28 100.0 32 ............................ AATATTGTCACCGTCTTGAAGCTAACCTTGAA 79138 28 96.4 32 .....T...................... GCTCTAATACCATCAGATCCCGCCGCGACTTC 79198 28 100.0 30 ............................ AAAACATACGCACGTTTCACGCTGGCGCTT 79256 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 52 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGCAGTTCTGGCTGTGTAGAACTGCAGTAAATTAACGTGCAAGCCCCAGTAATAGCGGGGCTTGGCAGTTTGAGTGATGTGTTTCAAATGCTATTCAGAGCGCTAAATAAAATTTCAATGAATGATCTAAATTACAGCTTTTTTCAGTTTAATGATCACGTTTAATGATCTCGGTTGGCTGTTAAGTTATTGATAATATTGAAAGGTGTGTGTTTTCCGTGGCGTTTTTTGACAAACTAATGATCACGGTTGTTTTTCCAATAATGGAGCGAAGCCAGTATTGGCGTGGGTTGCAAGATAATTTATAAGAAAGAAGAAATGAAACATCACAACATTGATAGAGTTTGTTTTCTTTTTGATCATCACAAATACCCTTTTTTTTGAGTAAGAAAATGGGTCAATAAAAACAATAAGTTATGATGTAAGTAAAAAAAAGGGTATTTAGAGACAATTTTTAACTTTTAGTTTTCTTATCAATGTTTTATGATTTATTCGCTTCA # Right flank : ACAGTGATTATTGTCTGCTTGTATTAGCTTTAGGTTCAGAAAATATTTGATGATTAAAAAAAGCCACTACATAAGTGGCTTCTTTTTTTAGATATTAATAAAACAGCAAAAGTGTCGCCACTTTGTCGCCATTATTACATTTATTAACTGTAACTCATTGTCTTTGTTGTGGTATTTTCTTCTCCAATAAATCCACCCGTTTGATGTGCCCATAATTGCGCGTAAATACCTTTTTGTTTTAGCAATTCAGCATGGGAGCCTTGCTCAATAATTTGGCCTTTATCTATGATAATTAACCGATCCATTGCGGCAATGGTGGATAAACGGTGCGCGATTGCAATCACGGTTTTACCTTGCATTAATTCATTGAGACTTTCTTGAATTGCTGCTTCAACTTCAGAATCTAAGGCTGAGGTAGCTTCATCTAAAATTAAAATCGGTGCGTTTTTCAGTAATACCCGTGAAATTGCAATTCGTTGTCGTTGGCCGCCTGAAAGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2789-2581 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYNI01000006.1 Photobacterium kishitanii strain ckamo.1.1 CFSAN065465_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2788 28 100.0 32 ............................ ATCAACGCTGGTGGATTTACATTAACGGTTGA 2728 28 100.0 32 ............................ TGCTTCGGTTGCTCCTGTTGAGGGTAAAAAGG 2668 28 100.0 32 ............................ AGCCTTAGCAGCACTTGGCACAGCAAGCGAAA 2608 28 89.3 0 ............G.............CT | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAACTTCACTGGCTGAAAATAATGGCGTGCCGCCTCCCCCACAAAAACCTACTAAGACACCAGCCTTAGCTAATTCACGCATTGCTGATTGCGTTACAGACGTGCCAGTTCCTAGCATGATAGCTGTGGTGTTTGCTATTGGTATATTCCAATACAAAGATTGCTTTCCTTCATCTGTCACGTATTCAACTCGCCCACCTTTCACTAATACACGACAATGTTGCAAATAATAAAGGTTGGCTCGCTTTGAGTGAATAATGGTTTTCAACTCACTTGGGGAAAAGACTTTAGCGCACATATAGAGCCCACCAATTGAAAGCTGCAATTATATACATGAAGACGTATATAAAATACCAGGTAATATCACAAATACCCTTTTTCTATTCGTGAAAAACAACTCAATATAAACAAGAACTTATAAACATGGTAAAAAAAAGGGTATTTTATGCGATTGTGTCACTTTATTTTTATAACCAATCACTTATAATTTAAATACTCCA # Right flank : GGCGGCCATGCTAATATTTCAGTGGATGGGAGTAATCTATTCTGTGTTGGCAATGATTATAAAATGGGTTCAAGTAACTCGATATCTGGTAACTCATTCAATTTTGATACGTGTGAAATGTACACACCAACGCAAACTAAATTAGCAGTCGAAAGTAGTCATCTTGAAAACAATTTTATGGTTTATGAAACCGATGAAAATAACGTTTTTGACAATGCCACCGTTGATCTAACAAACGGGAATAAAACAGTTCAGACGCACTATTACGATGGAGAAAAGCTAATCGACTTAATTCCAGTTGTTGGCTATAAGTAAAAATAAATACTACCACGAAACTCTTTAGTCTTAATATCTAAAGGGTTTCGTGTATTCAATAATTATTACATCTTCTTAGTATTCCACACAGGGCAACATATTAATGTAATTCAAACTCAAACTGACGAATAAACAACTTCAAGTCCGCCATTCATTCGAACATAGCCACCTCTCAGCAAATACCC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11338-13753 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYNI01000006.1 Photobacterium kishitanii strain ckamo.1.1 CFSAN065465_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11338 28 100.0 32 ............................ AAAGTGGCGATGCATAGAAAGAAACTCAAGCA 11398 28 100.0 32 ............................ AGACTCATTACGCCATTCATCTTTATAATCAT 11458 28 100.0 32 ............................ TTGCTAATTCAGTAAGAGTAATCTTTCTACCC 11518 28 100.0 32 ............................ AAAAACATCAATAGATGAATTATTAAGTAATC 11578 28 100.0 32 ............................ CTGATATATATAGATACAAAATAACGGTATAA 11638 28 100.0 32 ............................ TGACTCCCTGACTAACCCCACTACCCGCAAAC 11698 28 100.0 32 ............................ ATGGTTGAAATAATCAAAGAAGAGGACGGAAA 11758 28 100.0 32 ............................ ACTATCAAAGGCGCTAGATTCAAACAAAGATT 11818 28 100.0 32 ............................ ACAGTGCATCAAGTATCAACATTCCAGCATCT 11878 28 100.0 32 ............................ AGTTTGAATGACGAATCATGACGAGGTTTAAA 11938 28 100.0 32 ............................ ATAAAGCCAGCTTCAGCTCGAACAATTGTTCT 11998 28 100.0 32 ............................ TTTATTTCACAAAGCAACTGTTAGATATAAGG 12058 28 100.0 32 ............................ CCATCAAGTAATACGGGGTGAAGAAAATTAAA 12118 28 100.0 32 ............................ AGTGGAAGATTAACTCGCACGGACTGTGGCTA 12178 28 100.0 32 ............................ AGTCAAACCAAAATTGCGCACGCCTGCACCAT 12238 28 100.0 32 ............................ TTTGTAAGGATAGTAAATGTATATTTACTTGT 12298 28 100.0 32 ............................ TTGGGATTTGCTTGCTGGTTATACGTCTACTG 12358 28 100.0 32 ............................ CATATCATGTTTCTTGTTATATGCACCGCGAT 12418 28 100.0 32 ............................ CGGGTTATTTATTATCGTTAACTTAATTAAAT 12478 28 100.0 32 ............................ AAAGGTTAAGCCGAGTAGTAATACTTATCCAG 12538 28 100.0 32 ............................ TTCAAAATCAATTGGAGGATGCATTGGTTGTT 12598 28 100.0 32 ............................ TGACTCAAGTTGCCTATTGAACGTAGAAGATT 12658 28 100.0 20 ............................ ACCATCACCACCACCATCAT Deletion [12706] 12706 28 100.0 32 ............................ TATCCATAGCAACAACACCAACACCTAATAAG 12766 28 100.0 32 ............................ AATAACGACCCGTTGATAAGCATATAAAGTAC 12826 28 100.0 32 ............................ TCAAGGTGTGGGCGGTATCTTTTCTGATTTCA 12886 28 100.0 32 ............................ AAGTGCTTTTTGGTCGCTCGCTAGAATCTTGT 12946 28 100.0 32 ............................ AAGCCAACGTTGTTCATAAGTCTGATCGGCAA 13006 28 100.0 32 ............................ AAATTGAAATTTCATCTAAAACAATGACACCA 13066 28 100.0 32 ............................ ACCTATTGCAGATATAACAGCAATATAACCAA 13126 28 100.0 32 ............................ TAACTTCAAATTCGACGGCGGTCATTTTGTAA 13186 28 100.0 32 ............................ TTGGTGTGATTGGCGCGTCATTTAAAACCAAC 13246 28 100.0 32 ............................ AGTGATACCACCTCGACCATTGATCACGAAAC 13306 28 100.0 32 ............................ GTTAGCTGACACGCTATTTCCAGATAGCGCAA 13366 28 100.0 32 ............................ TCGCCAGCATTCTTGATAACTACGATTGAGTT 13426 28 100.0 32 ............................ TCATTACATGCTTGATTATGCTGTTACAATTC 13486 28 100.0 32 ............................ AGTAAAAGGGGGAATGGTTGTTAGGAATTGAA 13546 28 100.0 32 ............................ GTTTAATTATCTTGATTTAGATTATGATAATC 13606 28 100.0 32 ............................ AGTTTAAATGAGATATCAAATCGTACTCTGGA 13666 28 100.0 32 ............................ ACGTATCAACAACAGTTTTAACACCTTTATAT 13726 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 41 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TACACTCGTGTGACTTCTATTACGGCAATTCCGAGTGACATCAAAGGTTATCAAACCGTCAAGCGTGTGCAGACCAAAAGTGCGAATAATAAGCGTAAACGTTCAATTGCTAAAGGTTGGATCAATGCAGATGAGGCGACTCATGCTATTCCTGATACAGCAGAGCGTAGGTTAACCTTGCCTTATGTTCAAATACAGAGCTTATCTAACCAGAATGTTATGCGTGTATTTATTGAGCATAGCAAAGTAGTTAGTGATGCAACTGACGGTGTATTTAGTAGTTATGGATTAAGTGCAACCGCAACAATCCCTGTGTTTTAAGTTTTTTTGAATCGTAATAGCAATAATGGGTTAGATGAGTATTCATTTAACCCTTTTTTTTAGCCTTTATTACTTTTATTTAAAATCAATAGCTTATAAGTAGCCGGTGAAAAAGGGGTAAAAGCGGGTTTTTAGGGTTTTATTTAAATTAAACAATCGCTTATTATAGTTAAGCTTCA # Right flank : AACAATACATCTCTCTGCTTATCAGCTTCATATCCTTATGCATTATGTTTGTTTTTTTGCAAAATATAGTAAAGAGTGTTTATTGATAAACTACTGGCTATATTGAGTAGTGTGAAGATGAACTATTCAGAAATAGCAAAGCTGTAAGATACGCGGTTTAAGCAGATGAAAAAGCAGTGATAATAGAAGAGGCCTTATATGGCCTTTTTGTTATATAACATTTTAATAGTTACTTTTTAATCTAATTAAGAACCTTGACACATATTAACTCTATAAATGATAATGATAATCTTTATTGTAACGATGGAGTTGTTACATGCTAATAAATCCTGCATGCAAATTAATGGTTTTAGCTTTATTTGTTTTCGCGATGAATTTTCTAACTACATTATTGTTTAAGCACTATGATTATTTTGGGTTTACTGAAAATTCATCGGCAATACATGGCAGTATCATTTCGTTTTACGCGATAACTTCATATAAATTTATTGATTATTTAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //