Array 1 8684-10542 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCON010000022.1 Escherichia coli strain KCJ3K544 NODE_22_length_66851_cov_12.023170, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8684 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 8745 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 8806 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 8867 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 8928 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 8989 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 9050 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 9111 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 9172 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 9233 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 9294 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 9355 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 9416 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 9477 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 9538 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 9599 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 9660 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 9721 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 9782 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 9843 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 9904 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 9965 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 10026 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 10087 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 10148 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 10209 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 10270 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 10331 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 10392 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 10453 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 10514 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77-1020 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCON010000176.1 Escherichia coli strain KCJ3K544 NODE_176_length_1176_cov_7.918017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 77 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 138 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 199 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 260 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 321 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 382 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 443 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 504 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 565 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 626 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 687 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 748 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 809 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 870 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 931 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 992 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //