Array 1 147591-148518 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTVX01000028.1 Pseudomonas aeruginosa strain AZPAE14811 AZPAE14811_contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 147591 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 147651 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 147711 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 147771 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 147831 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 147891 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 147951 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 148011 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 148071 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 148131 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 148191 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 148251 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 148311 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 148371 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 148431 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 148491 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 138240-139828 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTVX01000046.1 Pseudomonas aeruginosa strain AZPAE14811 AZPAE14811_contig_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 138240 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 138300 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 138360 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 138420 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 138480 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 138540 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 138600 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 138660 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 138720 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 138780 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 138840 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 138900 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 138960 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 139020 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 139080 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 139140 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 139200 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 139261 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 139321 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 139381 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 139441 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 139501 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 139561 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 139621 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 139681 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 139741 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 139801 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 149759-148354 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTVX01000046.1 Pseudomonas aeruginosa strain AZPAE14811 AZPAE14811_contig_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 149758 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 149698 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 149638 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 149578 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 149518 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 149458 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 149398 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 149338 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 149278 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 149217 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 149157 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 149097 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 149037 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 148977 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 148917 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 148857 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 148801 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 148741 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 148681 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 148621 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 148561 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 148501 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 148441 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 148381 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //