Array 1 217424-216906 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYA01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain M-7537 NODE_3_length_696154_cov_88.048794, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 217423 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 217362 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 217301 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 217240 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 217179 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 217118 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 217057 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 216996 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 216935 29 93.1 0 ............TC............... | A [216908] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235291-233738 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYA01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain M-7537 NODE_3_length_696154_cov_88.048794, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235290 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 235229 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 235168 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 235107 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 235046 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 234985 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 234924 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 234863 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 234802 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 234741 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 234680 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 234619 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 234558 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 234497 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 234436 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 234375 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 234314 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 234253 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 234192 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 234131 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 234070 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 234009 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 233948 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 233887 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 233826 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 233765 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //