Array 1 817778-819758 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041005.1 Salmonella enterica strain FDAARGOS_768 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 817778 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 817839 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 817900 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 817961 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 818022 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 818083 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 818144 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 818205 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 818266 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 818327 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 818388 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 818449 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 818510 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 818571 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 818632 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 818693 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 818754 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 818815 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 818876 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 818937 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 818998 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 819059 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 819120 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 819181 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 819243 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 819304 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 819365 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 819426 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 819487 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 819548 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 819609 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 819670 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 819731 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 835891-837428 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041005.1 Salmonella enterica strain FDAARGOS_768 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 835891 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 835952 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 836013 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 836074 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 836135 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 836197 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 836258 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 836319 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 836380 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 836441 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 836502 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 836563 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 836624 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 836685 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 836746 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 836807 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 836868 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 836930 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 837033 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 837094 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 837155 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 837216 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 837277 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 837338 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 837399 29 96.6 0 A............................ | A [837425] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //