Array 1 263277-263576 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCVU01000013.1 Streptococcus agalactiae strain ES-PW-174 ctg7180000005278, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 263277 36 100.0 30 .................................... AACTTTCTTACAAAAGGTTCTAGTTTTCTT 263343 36 100.0 30 .................................... GCTGGAGATTTTACAAGCAGTTTGAATTTC 263409 36 100.0 30 .................................... ATCACACCAGTCGTTATGATGGATGACTAT 263475 36 100.0 30 .................................... TGTCAACAGTACGTGAGACGAGTGTGTAGG 263541 36 97.2 0 ..............T..................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 99.4 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : TGAA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 61-954 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCVU01000014.1 Streptococcus agalactiae strain ES-PW-174 ctg7180000005279, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 61 36 97.2 30 ..............C..................... GAAGGAATGGAAGACGAAAGAATGAAATTA 127 36 97.2 30 ..............C..................... TGAGCATAAAGTATATTGTCTTACGACATT 193 36 97.2 30 ..............C..................... AACTTTCTTACAAAAGGTTCTAGTTTTCTT 259 36 97.2 30 ..............C..................... AACTTTCTTACAAAAGGTTCTAGTTTTCTT 325 36 97.2 30 ..............C..................... TGTCAACAGTACGTGAGACGAGTGTGTAGG 391 36 100.0 30 .................................... TGAAGTTGATGGATATGTTGATTTAGAGCT 457 36 100.0 30 .................................... TAATCATTTTATGAGAGATACCGCCTCAAG 523 36 100.0 30 .................................... TTTAAAGAGATATCTGTTTCATCTTGCGGA 589 36 100.0 30 .................................... ACGCTCTGAGGCAGATGAGGAACAGGCGCA 655 36 100.0 30 .................................... AATCACTTCTGCATAAATATCTTTTACTTC 721 36 100.0 30 .................................... AAACATCCGCAACGGGATAAATAAAGCTAG 787 36 100.0 30 .................................... AGTTTCTTGTGGGTTAGCTTGTCCACCGTA 853 36 97.2 30 ..............C..................... GAACATGAAAGATTTTAAAAAAGAACATTT 919 36 97.2 0 ..............C..................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 98.6 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAGG # Right flank : CGATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //