Array 1 526524-527334 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEHJ010000001.1 Listeria monocytogenes isolate Listeria monocytogenes RO15 genome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 526524 29 100.0 42 ............................. ACACAAATATGAAAAAACTTCTATTAAAAGCAATTCCATCCT 526595 29 100.0 36 ............................. AAACCTATCACATTTAAGTATTTAGAGATTCCTAAA 526660 29 100.0 36 ............................. GTAGTTTGCGAACGTTTAAAAACATAATTTGAAAAC 526725 29 100.0 35 ............................. ACAGATCAAACTCCGGAAGGGTGATTGTAAATGGC 526789 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 526854 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 526918 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 526981 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 527045 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 527110 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 527174 29 100.0 37 ............................. TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT 527240 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [527263] 527306 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ========================================== ================== 13 29 96.3 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAGTTATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATTTCTATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTTGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTAATACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 543628-547170 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEHJ010000001.1 Listeria monocytogenes isolate Listeria monocytogenes RO15 genome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 543628 29 100.0 34 ............................. AGTTTTAGAAGTATGTTAGACGTTGACGAAAATC 543691 29 100.0 35 ............................. TCAAGCTGGTATGCACTTTTTGAGGTAAGCTATTG 543755 29 100.0 37 ............................. GAAAAAGAACCAGTTAAAGAACCCGTGAAAGAAGAAC 543821 29 100.0 36 ............................. AAAGAAAACTTGCAGCAGAATGACGCAAATCATGAA 543886 29 100.0 38 ............................. AGAAATTCTCATGGCGCTAATAACCCCATGCCAGACGA 543953 29 100.0 34 ............................. CATTTCAATCACTTCTTTTGATGTAACATTAAGC 544016 29 100.0 36 ............................. TGTAACTGCAAACGTCTTTCCGCAAATTCGTGTAGT 544081 29 100.0 36 ............................. TTATCCATTCCGTCATATCCCCACGCATCTGTTCCA 544146 29 100.0 37 ............................. AGAGTTTCCAGCTGTAAGGCCAGATATTGATAATTTC 544212 29 100.0 36 ............................. TATGAAATTATCTGCGAAGAGGGAAAACTAGACGAT 544277 29 100.0 36 ............................. AGCGGTTTTTCTTCTATAGAAGTAACTTGCTTTTGT 544342 29 100.0 37 ............................. GTTTATAGTATGTAAAACAAACACAGGAAAATATATC 544408 29 100.0 35 ............................. TAAATTGTTAAGCTTGTCAACAACCTGCAAGAACT 544472 29 100.0 37 ............................. GTTTCCAGTTTCTTCTATATAAACAACAAAAATAAAA 544538 29 100.0 39 ............................. ACGAAAATAGCTAAATTGGATTTACTTGAGTCTTTTTTC 544606 29 100.0 38 ............................. CAAAGCAAGTACAGAAGCGTATTATGCTCTATTAGAGT 544673 29 100.0 37 ............................. ATTTAAGTATTAATGTTTTTAAAAAGTTTGATTTATT 544739 29 100.0 38 ............................. TATCAAAAAGCTTGTGCTATTATGGAAAGTCGTTGGGA 544806 29 100.0 36 ............................. TTTAATAACTATGACAGTGAATTTAAAACGAAAGCG 544871 29 100.0 38 ............................. TCTGGAGAATCTGATGTTAAAATCTCTGATCATGTTGT 544938 29 100.0 38 ............................. AGAAATTAAAGAAGGTAGGGCATTCGTTGCACCGGAAA 545005 29 100.0 35 ............................. AAAATTAGCGTTCCAAAAATAAGACCTGTCGCAAC 545069 29 100.0 34 ............................. ATACTAAAACTTCGCTCATTTTCCGCAACTCCTT 545132 29 100.0 35 ............................. TTAAGAAATATGATTGATTCTCTGGATATCACTTT 545196 29 100.0 37 ............................. CCTCCACAATCACTCGGCTTTCTTCGTCTTTATCGAC 545262 29 100.0 36 ............................. ATTTAACAAATCAGCTAAATCAGCGCGACTCTGATA 545327 29 100.0 37 ............................. GTCGCTAGAGCTAAAAAATGGATAGAGGAACAACAAG 545393 29 100.0 36 ............................. TCAACTAATATTAATATCTCTTGTGGATTGGCCATT 545458 29 100.0 35 ............................. ACTTGAAGGACGTGCTTCAAAATATTTAGTTGCAT 545522 29 100.0 37 ............................. TCTGTTGTAACTGTTGTGCCTTCCACAGCGTGCACTT 545588 29 100.0 35 ............................. ACATTTTGCACGCACCAAGCTTGACGGTCTGAAAC 545652 29 100.0 35 ............................. TTTATCTTTATCTATTTCTCCAGTAATAGAGCACG 545716 29 100.0 34 ............................. ACATTTTTATCTGAGAAAGGGTTTAGGGAAAATT 545779 29 100.0 35 ............................. AAAAAAACAACTGCGCAAGAAGGGTATGAGCAATT 545843 29 100.0 36 ............................. GTTGGACACCGTCAGCAGAGCTTATAAATCCACTGT 545908 29 100.0 36 ............................. TTTTTCCATTCTTCTCGCCGATGTATTCCTTTTCTC 545973 29 100.0 36 ............................. CCAGAAATGGAGTGCGCGGTTGATTTTGGATTTAGC 546038 29 100.0 37 ............................. AAGAACATTAGATGAACTTAAAGCGTCTGTTGAACAA 546104 29 100.0 35 ............................. AAACCAGAGCCAGAAAAAGAAGTTGTGAAAGAAGA 546168 29 100.0 37 ............................. ACGTCACTTGTTTTTGCCTTTGTTTTCGCCCTTTCCT 546234 29 100.0 37 ............................. TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG 546300 29 100.0 35 ............................. AACAGTATCATCACGTTGTTATTGCTGTCACCTGT 546364 29 100.0 36 ............................. TAACCAAGCATTGCCAAAAACTCGTCTGTTGATAAT 546429 29 100.0 36 ............................. TTCTATTGCAGAACAGAATGAATTGTATGCACAAGG 546494 29 100.0 37 ............................. TCGTTAATCATAATTGATGAAAGTCATCATGTGTTAG 546560 29 100.0 36 ............................. ACGGGTACCAGCTTTGATTTGCCGTTTTCAATTATT 546625 29 100.0 35 ............................. TTTATCACTCCTATGCTTTTCTTATTTCTGTAAAT 546689 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 546753 29 100.0 36 ............................. TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC 546818 29 100.0 36 ............................. TTAATAAATCCGATGGTGATGCCTATGTTATACGTC 546883 29 100.0 35 ............................. TAAAACATCGCTTCGTTATACAATGTCTTTTTATA 546947 29 100.0 35 ............................. TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC 547011 29 100.0 37 ............................. CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA 547077 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 547141 29 93.1 0 .......................A....C | C [547164] ========== ====== ====== ====== ============================= ======================================= ================== 55 29 99.9 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACTAAAATCCCCTTAGAAGAAGTCGCCCCTCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //