Array 1 10952-12966 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALNI010000042.1 Clostridium perfringens strain CP-05 42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================================================================================================================================================================================== ================== 10952 30 93.3 35 AA............................ GAAATTAGAGATGCTGGTGAGCATATCTTAGTTCA 11017 30 100.0 36 .............................. CTATGAATTAGCAGAACCAGTTGAAACACCTTTAGA 11083 30 100.0 36 .............................. TACAGGCGATAGATTAAATATGAAAACTGTTTTTAT 11149 30 100.0 35 .............................. GAAAAAAACATTCTAGGAGTAGAACCAGAATGGGT 11214 30 100.0 36 .............................. TTCAGATGAAATAGCTTTATTATCTAATAAAGCTTA 11280 30 100.0 35 .............................. GTTCATAATGCTGGAATAACCGATGGTGCTATAGA 11345 30 100.0 36 .............................. AGAGAATACTTGCAAGGTTATAAAAGAAATAGAAGC 11411 30 100.0 36 .............................. TCTTAAACAAATTTTGGCTTGGTTACAAGGTTTTTT 11477 30 100.0 36 .............................. TAATGACGTTGTTGTAGAAAATAATAAATTAAAAAC 11543 30 100.0 36 .............................. AGTTTTTATCGCTTCACTTAAAATATAAAAATCACT 11609 30 100.0 35 .............................. GGACAAGAAGTTGAAGGTGCCAGCTTAAAAGAAAA 11674 30 100.0 36 .............................. ATTATCTTATCTTATTCTTAAGAATATGGGATTATC 11740 30 100.0 34 .............................. TAATTGCATATCTTTAGGATTATAACTTATGTCT 11804 30 100.0 34 .............................. ATAAAGGTTATGCTAAATTTGCTAATTTAATATG 11868 30 100.0 35 .............................. ATGAAACTCTAAAGATTAAATAAGGAGGGAAAGTG 11933 30 100.0 223 .............................. CCTTGTAAAATAGCCATTTTAACTTATTAGATTTTTATGAAAACCTAGTTATTTCAATAAGTATATCATAATTTTACCAGTATTTCACGCTTTTTCAAAGTACTAAAATGAAATAATCTTTAAATCCTCTTATTTCAATGCTTAGATCATATTCTCACTATCTTTTTTACTGGTAAAATAATTAATACTAGAGCACTTAAATTTCATAATAATATTTAATTTC 12186 30 73.3 60 C.A.T....G....T..T.....A....C. CAAAGTATCTCACTATAAGTTACAACTTAAATATTTTTAAAATAATGTTCAACAGCTTCT C [12197] 12278 30 70.0 37 A.GA.G..TT...TT.A............. TACCATATAAACAAGATAAAAAAGATATTTTAATCAA A [12289] 12346 30 90.0 35 ............TAT............... GCTTGATTGGAAATAGCCTCTTTAATTTCATACTG 12411 30 90.0 35 ............TAT............... ATTTATGTAGATCCATATGATCCAAATATAACTGC 12476 30 90.0 36 ............TAT............... TAGCAGAAAATATAAAAAAGCTAAGCATGGTACATC 12542 30 90.0 37 ............TAT............... TACCATATAAACAAGATAAAAAAGATATTTTAATCAA 12609 30 90.0 35 ............TAT............... ATTTCAAAACCAAATGGCTCAGGCTCAACTAATGT 12674 30 90.0 36 ............TAT............... TGGAATAATTCTTGTTACAATTTTTCTTTTGTCTTT 12740 30 90.0 35 ............TAT............... GGTGAAAGCTTTATCAACCCTACTTATGTTGTCAA 12805 30 90.0 36 ............TAT............... TGTTAAAAGCTTATTTGAAAATTCTTATTTTAACCT 12871 30 90.0 36 ............TAT............... TGGATTAGAAGATATAAAAAAGAATGAAATAGGATT 12937 30 90.0 0 ............TAT............... | ========== ====== ====== ====== ============================== =============================================================================================================================================================================================================================== ================== 28 30 94.2 43 GTTTAAATACATACCATGTTAATGTTCAAC # Left flank : ATTAAAAGCTCTAAGCCTGGATAGTCCTTTAAAATATTAAAACTTAAGCTTTTTATGAACTCCAAAGACTCCTCCTTGCTTTCAAAATAATAAATAGTTTTTCCTCCACCTCTTGTTATAAAATTTTCTTCCTTTAAGCCTTTATTATAATAATCCTCTGAAAAATCCTTAATAATAAGTGAAGCTCCTATAGCATCCTTAAGCTTATTGCTATTAAAAATGTATGTTTGCTTTTTACCTAACTCCCATAAAACTAAACTCCCCAAGGTGCGACACCTTCCTTCCATTTTTTGCTTGCAATAGTATTTTACCACAAATTATTATTATTAATAAATAATACTTTTTTAAACATATTTTAACAAATTAAAAAAATATCAGATAATCCTGTATAAACAAAATTATCTGATAAAAAAGGATATATGGATTTTTAACTTAACTTTAAGTAGATTTTAATATAGAAATTCTTAGATATATGATCTATTAATCTTCAAAAATAAAAA # Right flank : CACTTGTAAAATAGCCATTTTAATTTATTAGATTCTTATGAAAACCTGTCTATTTCAAGAGGTACATTATAATTTTACCAGTGTTTCACACTTTTTTAAAGTACTTAAACAAAACTTGTCTTAATCTCTCTTATTTCAATACTTAGATAATATTCTCAACATCTTTTTTACTGGTAAAATAGTTAACTCTAAATTACTTAAAATTTCATAATAATATTTAAGTTCTTATTGATAAACTACTCTTTTATATTCAATCCCAAGCATCACATTACAAGTTATAGCTTAAACAGTTTAAATACATATTATGTTAATGTTAAACCACTGTAAAATAGCCATTTTAATTTTACCAATATTTATCTTTTTTAAATTTTTTAGTTAATTTTATTAATTAAGTTATAAAAAATAGATAGACCTTAAAATGTGATCTACCTATTTTTCTTTTATTTTTAAATTTATAATGTACTAAAACTATGAAGATAAATTTTGGCAACTTTTTAATA # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.71, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATACATACCATGTTAATGTTCAAC # Alternate repeat : GTTTAAATACATTATATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 31519-28798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALNI010000017.1 Clostridium perfringens strain CP-05 17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 31518 30 100.0 34 .............................. GAGTTATCTATATAATCTCCACCAGTTAAAATAT 31454 30 100.0 36 .............................. CGGCGTGTAAATCTTGTATGTCTGCCTTATTAGCGT 31388 30 100.0 36 .............................. AGAAGAAAGAGCCAAAGCATTATGAGATTTCTAAAA 31322 30 100.0 34 .............................. TCTTTTGATTTTTAATCCCCTATTGATTAATATA 31258 30 100.0 35 .............................. TGCTGATTATAAGAACCAGGTTGATGATAAAATAA 31193 30 100.0 36 .............................. TTAATGTTATTACTTAACTCTTCTGCTTTAGCATTT 31127 30 100.0 35 .............................. CCTTCCTTTTTCAACTGTAGTCTTTTAGTAGTTAT 31062 30 100.0 36 .............................. TGCAGCAAATTTAATTGAAAAACGTACTAAAAAGAG 30996 30 100.0 36 .............................. AAATATTCCTCAAATTCGTATGGAACTAACAGAATT 30930 30 100.0 37 .............................. AGAGAATAATCTATTTAACACTATAGAAAGAGAAAAT 30863 30 100.0 35 .............................. CTTGCTTTAGATAGGTTTTAAACTATGCACGAACT 30798 30 100.0 35 .............................. TAGAATAGAAGATTTAGAAAAGAAAGAAGGAATGT 30733 30 100.0 36 .............................. GGAGGAGATAATAATGAATAAAGATGGAAGTTTTAA 30667 30 100.0 36 .............................. CTAAATTTTTTAATGGGTTATCTATAGGGCAAAAGA 30601 30 100.0 34 .............................. TACTAGGTATTAATTCTGGGTTAAGAATAAGTGA 30537 30 100.0 36 .............................. TCATCTAACCAAGGGGGATTATTAGAATACATATTA 30471 30 100.0 36 .............................. ATAGGTACAGTAAAGGGAGATGGATATTTCCCAAGT 30405 30 100.0 36 .............................. GGATATATCAAAATTAAAAAAGAAGCAGATAAAATT 30339 30 100.0 36 .............................. GATGAAGATATTTGGGAATACATTTATAAATACAAC 30273 30 100.0 34 .............................. TGGCACTAGCTAAATCTTTAGCGTTATTAGCTAA 30209 30 100.0 36 .............................. ACTCTCCTAAAAATCAAAATCTCTTTGTTGTTGCTC 30143 30 100.0 37 .............................. ACTGTTGAATAGGCAAAGTACCTTCAGCCATTTGCTT 30076 30 100.0 36 .............................. AGGATATTTTTATATTTTGGATTTAATTCAGCTAAG 30010 30 100.0 34 .............................. TATTCTAAATATGTAGTTGTAGGTTTCTTTGCAT 29946 30 100.0 37 .............................. AAAATATGGAATTCAAACAAATTCTATTCCAATAAAA 29879 30 100.0 36 .............................. TTACATATCATATGGCCATTCCTTTTATTTATCGCA 29813 30 100.0 36 .............................. TTTACACCGCCTTCTAGAAATACTATATCAGCTTCA 29747 30 100.0 35 .............................. GAGCTTGAAAATGATATTTTAACAACATTAAAAGA 29682 30 100.0 34 .............................. GCCATTAAGTATCATCCTCCTTGCAAAACTTTAA 29618 30 100.0 36 .............................. TTTTGTAGTGCAAAAAATGATTTATAAATATCTTAA 29552 30 100.0 35 .............................. GGTAGCTGCTATTAATAGAGATAAAGATATAATAG 29487 30 100.0 35 .............................. TATTTTGCTCTCCTTACTGTTATCCTTGGAATTAT 29422 30 100.0 38 .............................. AGAGATTGAATACCAATCTGAGCTAAAGCCTTACGAGC 29354 30 100.0 37 .............................. ATAATGAGAACCCAATGTCAGATGATGAGTTAACCAT 29287 30 100.0 34 .............................. TGCCATGTATTTCTTAAAGAATCCATTTGATCCT 29223 30 100.0 36 .............................. GCCTATAGTTGCATACCCTCTTGAAAATGGTAAGTA 29157 30 100.0 38 .............................. AGCCATATTCTCTCTTCATCTTTATCCCATCCACCTAA 29089 30 100.0 35 .............................. AGAGTTCGATGATTTAATTAGAGAGTGTGAAGAAG 29024 30 100.0 35 .............................. ACTGGTGCTTTAAAACTACTTGTACCACTTATATC 28959 30 100.0 37 .............................. TAGTAGTAAAGTAAAACTAAATCCGTTTCTTTTTCAA 28892 30 100.0 35 .............................. AAATCAAGGTATGTTAATAACTCCTAAAGAAGTTG 28827 30 96.7 0 .................G............ | ========== ====== ====== ====== ============================== ====================================== ================== 42 30 99.9 36 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : GTAAGATATGAAAAGTAAAATGAATTATAATTATGCTTTTGTATTTTATGATGTAAATGAAAAGAGGGTAAATAGGGTGTTTAAAGTTTGTAAGAAGTATTTATCTCATTTTCAAAAATCAGTTTTTAGGGGAGAAATAACCCCTGCTAATCTTATAAACTTAAGAAAGGATTTAAATAAAGTAATAGAAAAAGATGAAGACTTCATATGTATTGTTAAATTATTAAACGGAAATGTATTTGGAGAAGAAGTGCTAGGAATTCAAGAAGTAATTAACGGAGAAACACTGATACTTTAATAATTAATTCAAAATAACATATAATTTTACCAGTGATTTAAGTGGAAAAAAGTTTGCGAAACTCTTGAAATAACTAAGTTTTAGGCTGATTTTCGATACCCTCTTTAATTCTTAATAAAACACTGGTAAAATTATAGTATAAGTATTGAAATAACTAGATTAAGATATATTTATTAAATTTAAAAATGGCTATTTTACAAGT # Right flank : ATTAATACTGAATTCACTAAAAATTAAGTAACTAATTTATATTGTTTTTCAGTATAATATAATTACTTAATGTCTTTCTATATAAAGTTTTATAATTAAGTAGGGGGATAATATGAAAAAACTAGCTTTTGTTATAAAAAATATTTTGAAATTCTGGTGGTGGCAAGATATAGAAAAGTCTAATATTTTTATAAGGGTTATGAATCTGGGAATGGCTTTATTTTTAAGCTTTTGTCTCTTAGCATGGATGTATGGAGAAAGCTTTAATATTATATTAAGATCATTTATAAGTATTTATGGAGTTCTATGCTTCATGTCTTTTTGGCCAGTTTCATATTTATTTGATGAAGAGGATAAAGTAAAAGGAAGTACATTTTACATATTTCAAAATATTTCAGTATTTTGCTCTATTATTTTATTAGTTGTTTATATACTGAAGAATTATGATAGAGTTAAAAGCTAGTAATATAATCAAAAGCAATATAATTTAAAAAATATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 43166-41497 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALNI010000017.1 Clostridium perfringens strain CP-05 17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 43165 30 100.0 36 .............................. TCCATAGTAAGACCTTCTGTTACTAATAAATCATTT 43099 30 100.0 35 .............................. TTCTTTCTCTCCCTTTTCTTCATTATTAAATTTAT 43034 30 100.0 36 .............................. TAATCTTTTCTACTTAGAGAAGGATTATGGAAGGTT 42968 30 100.0 35 .............................. CTAGAGAACAGAGTTAAGCTATACTACAAAAATAA 42903 30 100.0 36 .............................. ATAGAATAAGTTGTTGTTTCTTTATCAAGATAATCA 42837 30 100.0 36 .............................. TCTCTATCGATATAAACTGTTTTAGTTTGTATATAT 42771 30 100.0 37 .............................. TACTAATATCTCCATTCAGCTATTAAATATATAGGTA 42704 30 100.0 36 .............................. TAGAGTTAAAAGAAAGAAGGGAACTTGGACTAGAGA 42638 30 100.0 34 .............................. GGAGCAAAACATACTGGAACAGATATAGGTTGTC 42574 30 100.0 36 .............................. TTGATAATAGAGAGCAGGCTAATTTACACATAACGG 42508 30 100.0 35 .............................. GTACAACTGGTAATAGTACTGGACCTCATTGCCAT 42443 30 100.0 38 .............................. AAACTTTAAAACTTTACCTTCCATTAGTGCATCTTCAA 42375 30 100.0 34 .............................. GCTAATTTCAACTCGGAAGTGTGGTGTTCCCCTC 42311 30 100.0 35 .............................. TTAGTTCCTCCTAAAACACTCCAAAAAGTTTTAAT 42246 30 100.0 34 .............................. CTTAATAATTCTTTTAAGCCTAATCCATAACTTT 42182 30 100.0 36 .............................. ATATCAAGGAGAAATTTATCCTTCGTTTTCTAATAA 42116 30 100.0 34 .............................. CAGGAGAAAGATTCAGAATTAAATGGGTAGATTC 42052 30 96.7 36 .....................C........ TTAATTTAATCCTTTCTATTCTTTATTCTTTGTGTC 41986 30 100.0 35 .............................. ACTTTATTTTCTTTTACAAACTCTGCTTCTTTACC 41921 30 100.0 36 .............................. TGGGAAGAGAATTTATTATACTGCACAAAAATATAA 41855 30 100.0 35 .............................. GTTAATAGTAATTTAGATAGTTTAAAAAAATCTAT 41790 30 100.0 36 .............................. AACACGGAAGAGGGGACGTATGAAAAGGTATATACC 41724 30 100.0 35 .............................. GATCCTGAAGGATGTACTTGGGGAGAAGAGTGCTT 41659 30 100.0 35 .............................. CTAAGAATGTGAAAATCTGTAGAATTTATTGCGGT 41594 30 93.3 36 ...............AG............. TGTTCTATGGCCTTTATTTCTATAAGTTCATCTCTA 41528 30 93.3 0 .......C......G............... | TT [41501] ========== ====== ====== ====== ============================== ====================================== ================== 26 30 99.4 36 ATTGAACTTTAACATGATATGTATTTAAAT # Left flank : TAAACTTTTTCATAACAATATACCTCCTTTAAAATAAAAAAGCCAGAGAAATATTATAAAAATATCTCCCAGGCTTTTATCCTTCCGTGTTCACAGTTTTTCTGTGCGTTTTCTCTTGGACCAGACTAACTAAAAAGCTACGGAACCCTAGAAAACTTTATATTATTAAGTTTTAATTAACAAATTCAAAATTATAAGTTAATTTTAGCATAGTATAAATGCTAAATCAATTCACTGATAAAAATTTGAAGTTTACTGAATAGGTGAATTTTAGTATTTAATTAATGCATTCTTAGAAACATTTATAAATACACAAATAAAATTTTACCAGCCTAAAATCATATAAAATCACCTTTCAGACCTTGAAATAACTAGATTACAAGTTGATTTTATATTGGTGCTTTAAATTAAAGTGAAACACTGGTAAAATAATAAGAGAGGTGTTGAAATAACTAACTTAAAGATAAATATCAAGAAAAAGAAATGGCTATTTTACAAGC # Right flank : AAGAACTTTAAATATTAAATTGTTGAAATAGGCATATTGCGATTACTTTTTCTAAGCTGATTAAAATACTTTTATTATTAACTAACATTTTATTAAATAATTAATATTACAAAAATGTATAAATTTATAAAATAATTATTTGTTTTACAAAATTTATTGGGTAAAAATTATAATTATAACTATAATATGTAATATTTTTGTAAGATGAAAAGAAAAAATGCTTTAAAATATTAAAATGACTAAAAGATAAATTTTGTAAAAATAGTTTTTATTGGTATAATTAAAACATCAAATGTATTTAATTTATATAATAAAGTTTTTAATAACTCGTGGAGTATTTAAAGAATGTCTTTAATGCATAAAATATTTTAACCATAACATTAGATGTACTAAACAAAAGATAAACTAAATTATTTGATTTTTCAATTAATTATTTAAAATCAATTTTAATAAAAATACATTAGATTTATATAAGGAGGTGAGTATGGTGAAAGTTTTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACTTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //