Array 1 52284-50135 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCYF01000004.1 Ligilactobacillus salivarius strain C3 contig00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 52283 36 100.0 30 .................................... TCTTGCAAACCCTGCTGAAACATGGGCGTG 52217 36 100.0 30 .................................... CACACATCGCGATGATTGTATCAGAAGTCA 52151 36 100.0 30 .................................... CATACAGCCACTATTATATGCATAGACTTA 52085 36 100.0 30 .................................... TTGATTATCCTTAAACATTTAAATTAATTT 52019 36 100.0 30 .................................... CAAGCTCGCTCCCCTGGATTGCACCGACAA 51953 36 100.0 30 .................................... TAACAAAATAATATACGAGACAAGCAAAGC 51887 36 100.0 30 .................................... AAAAATATGTTTTTGTGTTGTCGACCTAAT 51821 36 100.0 30 .................................... GCAATTTACCAGCTACTGTTAAGAAATCAG 51755 36 100.0 30 .................................... TTGGCTCTCTCTTTAGCTGCTGCGCCTGAA 51689 36 100.0 30 .................................... AAGAAAATGGCAAAGTCTACCTAAGAATCG 51623 36 100.0 30 .................................... CAGTAGATAAAGGATCAAACGAGTTAAAAG 51557 36 100.0 30 .................................... ACAAGCCGTCAAGGCTTTAAACCAATACAA 51491 36 100.0 30 .................................... TTATAACGTCAAGAATTTAGACTTGCAAAG 51425 36 100.0 30 .................................... GCCTTGTTCCTTTTCAACTTCTGATATGTA 51359 36 100.0 30 .................................... TCAGAGGTAGCCAAGCAAGTGGCAATTTAT 51293 36 100.0 30 .................................... CGAAACAGGTTTAATTGCATTAGTTCGTGA 51227 36 100.0 30 .................................... AAGATCCTAGAAAGCCTATCAGCACAACAG 51161 36 100.0 30 .................................... ATGTTGTACGATAAATTGAAGACTGCTTCA 51095 36 100.0 30 .................................... ATGACATTGATGTTTAACAACGTTATGCAA 51029 36 100.0 30 .................................... CCTCTCTTTCAATGATTGAAAAAGGTAAGA 50963 36 100.0 30 .................................... TGTAGACTACAATGGTCGTCCTATTGTTGA 50897 36 100.0 30 .................................... TTAATATTAATGATCCCGGTTTAGCTAAAT 50831 36 100.0 30 .................................... GTTTATACAGTTATCTCAACGTTGGAAAAA 50765 36 100.0 30 .................................... TGTTGTAATGGCAGTAGTGGTATCAGTTCA 50699 36 100.0 30 .................................... CAATGCGACTGGGTCGTATGTTTGTAACGC 50633 36 100.0 30 .................................... CTTTAGTGATAATATCTAAGTCTTCGTATC 50567 36 100.0 30 .................................... AGTTGCTGATGTTCGTACTATTCCACAAAT 50501 36 100.0 30 .................................... GTTATGATAGCGATGATGAGTTTGAATTAT 50435 36 100.0 30 .................................... TCAACAATGCGGTCTTGTCCACTGTCTGTT 50369 36 97.2 30 ........................A........... TTTCAAGTTATATCCTATGTTGTGAGTTGG 50303 36 97.2 30 ........................A........... GAAGTTTCCTATTGAATGGTGCAAAATTCG 50237 36 97.2 30 ........................A........... GATCTACGTTACATTTTCTTAATGTTCACA 50171 36 80.6 0 ......T...A.........T...AG...C...C.. | G [50141] ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.2 30 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACT # Left flank : AACAGACCGAATTAATAAAAAGTATATGAATATATTGATCAAGAAGATTATTGAAAATATTACAGACGATGAAAGGCAAGCAATACTAAAATCGGTGAATAGTTTGTATGATCGTATTAGAGAAGTTTTGTATAAAATTGATATACCCTTACAAGTAGATTATGACAATGATTTAACGAGATTATTCAAGTATTGTCAAGTACATACAGAGACGTTGCTATGGAAAAATGCATATGATAGAATATCCTCAGATGTTAAATTACATGTGGAACTAAATAGAAAACGAATTATAGGTCTAACCAATGTCGTACATTATCTTACCAAAGAAGAGTTTCAGGAACTTGTAAGTCTTGTTAAAGCGACTAACTCATTAGTATTTATAATTGAATTCACAGAAAAGGATGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATGTTGATTGGCACTAATGAATCGTTAAATTTTGATTATAAAATAACG # Right flank : AAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATGTTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATAAGATATAAAAGAAAGTGAGGGATGATGATGAAAATCCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAAGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGATTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGAAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAACTAGGGAGGGGGAATAATAATGAACTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //