Array 1 2016-2440 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZTZ01000180.1 Aggregatibacter actinomycetemcomitans serotype e str. ANH9776 contig0180, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 2016 33 93.9 32 A...............................A CCAATACATGAACGTGGAACGCATAGAAGACA 2081 33 93.9 32 T...............................A TCGCCGGAATGTGTACCGGTCTGCCAGTTTGG 2146 33 100.0 31 ................................. CCACGTGATAGTGCGGGCTGAATGCACATAA 2210 33 100.0 32 ................................. GTAGAAATCCAACAAGTAAAACCAAAACCCGC 2275 33 97.0 34 ................................T GGGAACATATCTTCAGCATCTTCTTTATCCATTG 2342 33 97.0 33 ................................A CTACCGGCACCTGGAATTGGTTAGCCAATACCC 2408 33 90.9 0 G...T.......G.................... | ========== ====== ====== ====== ================================= ================================== ================== 7 33 96.1 32 CCAGCCACCTTCAGGTGGCTGTGTGTTGAAACG # Left flank : TTTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGGAGACTCGGAGGGGCAAGCCAGGTTGGGCCGTATTGCGAAGCATTGCTTGGATTATGGCGTACGGGCGCAGTATTCGGTGTTTGAATGTGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTAGCGACTTATGATCCGGATTGTGATAGTTTGCGCTTTTACCACCTAGGCAGCAAATGGCGGCGCAAAGTGGAGCACCACGGGGCGAAGCCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCCTGGTTCTCATCAAATTCCTGCTGAGCTAGCGATCCTTGTTTTCTTTAACAATTTGGAATAGTTAATTCATTTGTATAACGACGATATGCCCGTTATACTTATTCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTACTGATTTTTCTTATTTTTTCATATAGGG # Right flank : GGGACTCTGTTACATCTGAACTCTGATACCAACTAAACTAAGCGCTTTATAAAAATAAGGTGCTTTTCTTTTCCCGCATACCAACACAAAACTCCTTGCCCTTCCTCCACAAAATATATAGACTGAGTTCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATTCTGGCGTAGGAAACTAACAGAGAATCATATTTCCTTTCTTTT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCACCTTCAGGTGGCTGTGTGTTGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.60,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 90-520 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZTZ01000242.1 Aggregatibacter actinomycetemcomitans serotype e str. ANH9776 contig0242, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 90 33 97.0 33 ................................T CCTCTAGTTTTAACTGCTCTTTCAACTTTTCGA 156 33 100.0 33 ................................. TTACCTGCACCAATCGATTTATTAGTAGTAATA 222 33 97.0 33 .................G............... TCCCACGTCTGCGCAATATATTTTGAGCAATAT 288 33 97.0 34 ..............A.................. AAAACGGTGATGATAAATGCGCCGTTTTGCCTGA 355 33 100.0 34 ................................. ATGACTTTGAATTGTTTTGCAGATCTAGGCAAAA 422 33 100.0 33 ................................. GATGGTGTACTAAACCTGATGTAATGCTAGTAT 488 33 78.8 0 ..A....C.C..........A....C.....TT | ========== ====== ====== ====== ================================= ================================== ================== 7 33 95.7 34 GCGGCCATCTTCGGGTGACTGTGTGTTGAAACA # Left flank : CGTTATACTTATTCCACTCTCTATTTTGAAATAAGTTAGCGAAAGACAGTAAGTAATCTACTGATTTTTCTTGTTTTTTCATATAGGTAG # Right flank : TACTTGGTATACGCTTTTTATGAGCATTTAATCGGTTAAAAATATATGAGCTTGTTGCCTAATGGTAGGGCGGCGTTTAACAAAACGCTCTGTGCGAGTTTGATACTCGCCAAGCTCACTATTTATTGCCCTGCACAATTTTATGTAATCCTTTCTCAATTTTATTCAACATACGGGTAATCTCCAAAAAAACACCTCTAAAATCGACCGCACTTTTCCCCATAAATAAAAAAGCTGAATCTCTCTCGAAATCCAGCTTTTCTTTTACCTATTTATTACGCTAATTCAGTGCGTAATTTTTTCGTGACGTCAACCATGACTTTCAGTTGTTCTAGGGTTTCTTTCCAGCCGCGGGTTTTAAGTCCACAGTCTGGATTTACCCATAAACGCTCTTTTGGCACCACTTGTAACGCTTTACGGAGTAAGTGTTCGATTTCGGCGGCGGTTGGGACGCGTGGGCTATGGATGTCGTACACGCCCGGGCCTATGTCGTTCGGGTA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGCCATCTTCGGGTGACTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //