Array 1 27126-27526 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQBF01000189.1 Escherichia coli strain EELTKB227 NODE_2402_length_139283_cov_40.674309, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 27126 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 27187 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 27248 29 93.1 38 ...........................NN NNNNNNNNGTCAGTAAACCCGCTGGCGGGTACTGGATA 27315 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 27376 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 27437 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 27498 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 99.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAAATTATCCGAAAGGCACTGGGTGTTGTAATGACGCAGAAATATTCGACAAAGCGGGCATTGCTGTACTTTCGGTGGAAGCGACTAACTGGAATCTTGGGAATAAGGATGGTTATCAGCAACGCGCAAAAACAGCCGCATTCCCTGCGGGAAATAGCTGGCATGACGTAAGACTGGATAATCAACAGCATATTGATAAGGCACTTCCTGGAAGAATAGAACGTCGCTGCCGTGACGTTATGCGGATAATGCTACCGTTGGTGAAGGAGCTGGCGAAGGCGTCTTGATGGGTTTGAAAATGGGAGCTGGGAGTTCTACCGCAGGGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGACGCGGGGAACACCAGATTATCTTCTTTTTCAATCCAGCCACCGACGGTTTATCCCCGCTGGCGCGGGGAACACNNNNNNNNNNGAGGATGTTCGGTCCCGGAACTAAACCGGCA # Right flank : GNNNNNNNNNNCGCGGAGTGAGACGGCGTACGAGCATTGCCGGTTTATCCCCGCTGGCGCGGGGAACACGGCCAGCAGGTCAAACGGATGTTCCACAATCACGGTTTATCCCCGCTGGCGCGGGGAACACATGTCGAGCGCGTTGACAGCTATATTCGCCGTCGGTTTATCCCCGCTGGCGCGGGGAANNNNNNNNNNTTCATAAATTAATTTACTATTTTGAGTGCGTGTTCCCCGCGCCAGCGGGGATAAACNNNNNNNNNNAATTACCGCCGGGCTAACGTTTGATCTCACGGTTTATCCCCGCTGGCGCGGGGAACACGCAGATTTCAAACAGGCGCGTAATCCCGCGTTTCGGTTTATCCCCGCTGGCGCGGGGAANNNNNNNNNNTTGTTTTCGCGCCCGTGTCATTGTCGAGGTCGGTTTATCCCCGCTGGCGCGGGGAACACCTTACCACCCAGACACTGATACTCCACATAAACGGTTTATCCCCGCTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27717-27566 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQBF01000189.1 Escherichia coli strain EELTKB227 NODE_2402_length_139283_cov_40.674309, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27716 29 89.7 32 NNN.......................... ACGGCGAATATAGCTGTCAACGCGCTCGACAT 27655 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 27594 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCCCCGCGCCAGCGGGGATAAACCGGCGCACATATGAAAAAAGCCACGGGTTACGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTCCCCGGCGCTAAACGGGGTAAAAAAATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAACTGGCGGAATACAGGACGGGTGGATATTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTATGTGGAGTATCAGTGTCTGGGTGGTAAGGTGTTCCCCGCGCCAGCGGGGATAAACCGACCTCGACAATGACACGGGCGCGAAAACAANNNNNNNNNNTTCCCCGCGCCAGCGGGGATAAACCGAAACGCGGGATTACGCGCCTGTTTGAAATCTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGAGATCAAACGTTAGCCCGGCGGTAATTNNNNNNNNNNGTTTATCCCCGCTGGCGCGGGGAACACGCACTCAAAATAGTAAATTAATTTATGAANNNNNNN # Right flank : GCAATGCTCGTACGCCGTCTCACTCCGCGNNNNNNNNNNCGGTTTATCCCCGCTGGCGCGGGGAACACTTCAATGGTTGCCTCTTCATCATAATATAGACCGGTTTATCCCCGCTGGCGCGGGGAACACCGGTGAATCGCTGCGTCGCGGTTCATGTGGTGCGGTTTATCCCCGCTGGCGCGGGGAACACATCGACGGACTGAAAGAGGTTCAGGAGAGCGCCGGTTTATCCCCGCTGGCGCGGGGAACACTATCCAGTACCCGCCAGCGGGTTTACTGACNNNNNNNNNNGTTTATCCCCGCTGGCGCGGGGAACACTCAATTTGTTCTCGTATCCAGGTGTGATCTAACGGTTTATCCCCGCTGGCGCGGGGAACACGCTTTTCCCCACGCGTCCAGATCTTCAACGGGCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCGGTTTAGTTCCGGGACCGAACATCCTCNNNNNNNNNNGTGTTCCCCGCGCCAGCGG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 28349-27819 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQBF01000189.1 Escherichia coli strain EELTKB227 NODE_2402_length_139283_cov_40.674309, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 28348 29 100.0 39 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCTNNNNNNN 28280 29 89.7 32 NNN.......................... CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 28219 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 28158 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 28097 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 28036 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 27975 29 100.0 37 ............................. ACCTCGACAATGACACGGGCGCGAAAACAANNNNNNN 27909 29 89.7 33 NNN.......................... AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 27847 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 9 29 97.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGNNNNNNNNNNTGTTCCCCGCGCCAGCGGGGATAAACCGACAGTGAAATATATTGGGATAACATAAAGTCG # Right flank : TGAGATCAAACGTTAGCCCGGCGGTAATTNNNNNNNNNNGTTTATCCCCGCTGGCGCGGGGAACACGCACTCAAAATAGTAAATTAATTTATGAANNNNNNNNNNTTCCCCGCGCCAGCGGGGATAAACCGACGGCGAATATAGCTGTCAACGCGCTCGACATGTGTTCCCCGCGCCAGCGGGGATAAACCGTGATTGTGGAACATCCGTTTGACCTGCTGGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAATGCTCGTACGCCGTCTCACTCCGCGNNNNNNNNNNCGGTTTATCCCCGCTGGCGCGGGGAACACTTCAATGGTTGCCTCTTCATCATAATATAGACCGGTTTATCCCCGCTGGCGCGGGGAACACCGGTGAATCGCTGCGTCGCGGTTCATGTGGTGCGGTTTATCCCCGCTGGCGCGGGGAACACATCGACGGACTGAAAGAGGTTCAGGAGAGCGCCGGTTTATCCCCGCTGGCGCGGGGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NNNTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 55260-54121 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQBF01000189.1 Escherichia coli strain EELTKB227 NODE_2402_length_139283_cov_40.674309, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 55259 29 93.1 32 NN........................... ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 55198 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 55137 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 55076 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 55015 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 54954 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 54893 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 54832 29 100.0 38 ............................. GAGCAACAAAACAATGAATCCAACGGATTGNNNNNNNN 54765 29 93.1 32 NN........................... ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 54704 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 54643 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 54582 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 54521 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 54460 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 54399 29 100.0 38 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACANNNNNNN 54332 29 89.7 32 NNN.......................... AAACCGGACGAGGGCGCGCTAAAACGTGATTA 54271 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 54210 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 54149 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ====================================== ================== 19 29 98.6 33 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTNNNNNNNNNNTTCCCCGCGCCAGCGGGGATAAACCGACGGGGACGAATCACAGCAGCGTTATCGTGNNNNNNNN # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //