Array 1 294540-294293 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOBT01000012.1 Myxococcus xanthus DZF1 contig_000012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 294539 37 94.6 31 .......................AT............ TCACCCAGCAACGTGGGGGAGTACCGGAGGG 294471 37 97.3 35 ..........A.......................... ACCGCTGACTCCGTGGACCTCGCGTACCTGGGCCA 294399 37 100.0 33 ..................................... CGCGAGGCGCACCGGGTGGTGGACGGGTGGGCG 294329 37 94.6 0 ......T............A................. | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 96.6 33 GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Left flank : CTCCTCGTGAACGCGAGGAGCGTGGGTTGAAACCTGAACGCCGCCGCCGGCGTGCTGTTTTCGAGG # Right flank : CACCCAGAGCACTGGAGTCCCGGTGCCGCGTCCTGCTCGTTCCTCATGAACGCGAGTACTCTCTCTCTTCAACGGGTCCGAAAATTGGGGAGCAGATCACGAGGACTCGCTCATGCTCAGGCTCCAGAAGTCGCCGGGCATACCCAATCCACGGCACTTCTGGCTCGAGGTTTTCGGGGATGGCCGTTCCAAGCGCAACGGCTCGTCTCTATCCAAAGCGAACGCGGCCGACGCCCATCGGCTCACGATGCTGCTCATCGCCGCGCGCCGGTTGGACGAATACAAGGAAGATCACAGCGCCCTCCTCCCGTCGCACATGACCGGCAGGTGACGATGTTCGAATCCACCGTGGACGGTCGGCGCACGCGTCTGACGTTGGACAGCGACACGCCGCCCGACATCCTCCGCTTCATGCCGCAGGTGGCTGCCGCTTACGGCATCGAGCTTTGAGCACGAGGACCCCGGGCGCCCCAGGGTTGGAGGAACACCTCCGTCTCCTC # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 752-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOBT01000014.1 Myxococcus xanthus DZF1 contig_000014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 751 37 100.0 33 ..................................... GGGCCCGAACACGCGGCGAGAGCCAGCGCCATC 681 37 100.0 33 ..................................... GCTGGCACACGGGCGAGCCGGAACAGCTCCAGC 611 37 100.0 34 ..................................... CGGATGGTCCACAGGACCACCTGGCGATCATCGT 540 37 100.0 34 ..................................... CGAAGGGTTGAAGGCCACGAGTGCGAGTGGCAGG 469 37 91.9 37 .................G...AG.............. CACGCAGGCCCAAGCGCAGCTCCATGCGCAGATCGCG AC [451] 393 37 100.0 36 ..................................... CGGGCAGGTGCTGTGGACCGCGTTGGTGGCTGTCGA 320 37 100.0 32 ..................................... CAAGCTGTGACAGCGGTGTGACAGCGGATTCT 251 37 100.0 35 ..................................... AACAACTACCTCGGGAACATGGATGGCACGGTCAA 179 37 100.0 33 ..................................... GAGGAGGGGCTGCGCAGGGCCCTGAAGTCTGAC 109 37 100.0 34 ..................................... GCGTCCGGGCCCGCCTGGAGAACCACGGGGCATT 38 37 97.3 0 .................C................... | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 99.0 34 GTCGCTCCTCGTGAACGAGGGGAGCGTGGGTTGAAAC # Left flank : TCCCTTCGCGATGCGCTGATGCGTAGATTGACCGTGCTGATTTGTTACGACGTGCGGGTGTCGGACCCACAGGGGCCTCGGCGCCTGCGCAAGATTGCGCGGGCTTGCAGAGACCATGGCGTGCGAGTGCAATACTCCGTCTTCGAGTGTGTCCTGGAGCCCAAGGACTGGGTCGTCCTGCGCGCCCGCCTGCTCGGCGCATTCGATTCGGAATGCGACAGCCTGCGCTTCTACTTCCTGTCGGAGGACGATGCCCGGAAGACGGAGCATCATGGCGCCAGAGCACCCTTGGACGTCGAGGGGCCGCTGGTCCTGTAGGCCTCCGCGAACCCGTCCCGGTGTACGCTCCGCCGAGGGTTCGCGCTCATTGAAATCCCGAATAGAATCATGGAGTTGGGTGAGTGGGCGTCAGGAACGGCGAGGCGCTTTCGTGGCCCCGCGGGCCGGTTCGCGAAGTTCGGCCGGATTCCGTAGTCAGAACGGTATGTTGGAAGGGCAGA # Right flank : CA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGAGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCTCGTGACCGTGAGGAGCGTGGGTTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 277034-276419 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOBT01000014.1 Myxococcus xanthus DZF1 contig_000014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 277033 36 100.0 36 .................................... AACGCGACCTGCGGCGTCTCTTTGTATCCGTGCACC 276961 36 100.0 37 .................................... TCCCTGCGCGATAGGGCCGCGCGCGTGGTACCCTTCG 276888 36 100.0 40 .................................... AAAGGTGGGGCGTCCTCTCGCACCAGGTGCCCCGCGTGGG 276812 36 100.0 35 .................................... TCGACGGGGACGAAATGGGCTCACGCCTCTGGACG 276741 36 100.0 36 .................................... TGGAAGAAGACGGCCATCCGCCGGCTGATCAAGCTG 276669 36 100.0 38 .................................... ACATGGATGCCGCGCAGTGCCTGCATCGGCCCGAGCCC 276595 36 100.0 33 .................................... CCAGCGCATATCCCTCGTACCGCCCGAGGTTCG 276526 36 100.0 34 .................................... CTGAGCTGCGGGTGAAGGGGCGTTGCAGGCCAAG 276456 36 94.4 0 .....A............................C. | TC [276423] ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 99.4 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : GCTGACTGTCCTGTTGTCCAGGCGGACCCAGAAGAGCCGTTCAAGAACGAGGACCATATCGTTCCCCTGTATGGTCCCTTGAAGGACATGCTCTTCCTGATGGCCTTCAGCAGGAAGCGGATGGCCCTTCTGGAGCATCGGCGACGGTTCCTCCCTTCACTCGTGCGCAGCGGAACGGGGAATGTCCGAATCGTGGCTCCCTCCTTGGTGGGAGCCATCGACGAGACGCTTCTCCAGCTCGGCTTCCAGACGCTGCCCTATACCAGCCCACTGACTCCGCTCTACGAGCGCGGTGACGCAGCCTTCTACGTCGACCGTTCTTCACAGGGAGGAGGACTGTCCGCCGAGTTGGCGGCACGAGATGAGCGAGAATTCGGGAGGCTGGTCGAAGTCATCCAGGATTCTACGACTCTTGTATAGTATTATCCGGTCAGGTGCACCAAGCGCGGTCGCCCCGTGCTGACGGATACGGGCGCCATTGCCATCCCAGAGGACGGCAA # Right flank : TATCAGAAGATCTTCATTGTAGCCTGGGCCAGCCATGAACGCAGCGCCTCGCCTTCAACCCGGACGGGCGCGTTCTCGTGACCCAGATCAATCCAGGAGGCCTGGGTCGCCTGTAATCCGGAGGCGCCGCGGAGATCTGCCCCAGAAAGCCTCGCTCCATGAAGGACCGCGCCTTCCAGATGCGCATCTCGGAGATTCGCGGACGCGAGGTTGGCACTGACCAGGTAGGCGCCTTGAAGGTCCGCGCCTTGAAGGTCCGCGCCTTGAAGGTCTGCTTCGCCGAAGCTGGCTCGGAGCGCGTTCACCTGCGTCAGAATGGCCCCTCGAAGGAGCGCATAGTCCAGGTTGGCCTTTGAAAGCTGCGCTCTGGAGAGGCTGGCGCCGATGAAAGATGCGGACGCAAGGTTGGCGTGGGCGAGCTTCGTCCTGTCCAGGATGCATCCATCCAAGCGCGCCCCAGGAAGCGCTGCCTCCGATAGATCTCTCGACGACAGGTCGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 278846-278309 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOBT01000014.1 Myxococcus xanthus DZF1 contig_000014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 278845 36 97.2 37 ...........A........................ TACCCACCCATGCCGACCGTTATCAGCTCCCACATCT 278772 36 100.0 38 .................................... CTCGATGCGATGGGTTCGAATCCGGGCGGTCCTGTGAC 278698 36 100.0 33 .................................... TCCCGGGCCTGAGCTACACATCCGCGCTGGCAT 278629 36 100.0 34 .................................... GTCAGCATCGCGTCCGGAAACTTGCCGAGCGCCT 278559 36 100.0 35 .................................... CTTTACCTGCCGCGCCGACAACGACCTGCGGCGGC 278488 36 100.0 35 .................................... CCTTGGTACGTGGAGTGCGGCATTGCAGCTCTCAT 278417 36 100.0 37 .................................... CTGCCGCGTCCGCCCATGTTCTTGCTCTCCATGTTTC 278344 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 99.0 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : TGGGACCTGTATCTGGAGAAGACGCGCGT # Right flank : CGCTGGTTGTTACGCCAGTCGTTGTTGGTGTGGCCGCACACACTATTTGAGTTGTGAATGACTGTTCTCGCGGACACTGATTGAGGGGCTCGCGAGGAGAGGTTCCGAAAATGCCATTACGGAGCCGCGCCACCGGAAATCACGCTCGTGATGGGAGTCAACTCATTGTCGCGACAGCAGTTTCCGCGAGAAGCGGAAATGATTGCTCCCATCCTGCGGTTCTCCGGTCGCGTCAGGGCTGCCCGAAGGGCACCGCCGGAGGCGGCCAAGCCCTTGACGCGACTGGGGAACCGTAGTCCCGAGGCTACCAACCAAGTGGCTCACCGGACCATCAACAAAGGTGCGCGGCAACACCTCGGGCGACAGCTGCAAGGTGGTATTGACGGAGATGCTCTGCGACATCAACAAGAAGTCATGCTGAACTCTCTCTTGCTCCCGTTTGATGCCCTACGCCATGAAAGAACTGCTCAAGTACATCAATGGATTCGAACCCGCATTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 491-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOBT01000032.1 Myxococcus xanthus DZF1 contig_000032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 490 36 100.0 34 .................................... GTCCGGCGCTTCAAAATCTCTTTCGACTCATGCA 420 36 100.0 37 .................................... CCGTGGTGGGTGATGGCCCACGTCCACGGGCGCGCGA 347 36 100.0 35 .................................... AGGTACTTCTCCAGGCTGCCGCGCATGCCCGTCAG 276 36 100.0 35 .................................... GGCCTGATGCGCTCAGGCGGGTGGCTAGATGGATG 205 36 100.0 35 .................................... ACGTGGCACGCGGACAACCTGCGCGTGCATGCCAA 134 36 94.4 36 ..................................GA CGCCGCGCTCCAGCATCGTGACGACGAGCACGTGGT 62 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 7 36 99.2 36 GTGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : GCTGGTGCGTATCGCCGGGAAGCGGGTGGTGGGTTACGCGCTCGAGCTGCATGGCGTTTCTGGAGAGGACTCGTTGCGAGTGCAGGCACAAGGCCTGGGCGGGCGCCGCCACATGGGGTGTGGCTTGTTTCTTCCGCCGCGTCCCGTGGTGCGGGGCGTTGTGCCGCAGCTCGGGGAACTCGCGCGGGCCGCGTGAAGGCTTGCCGGTGGAGCAGGGGCCTTGCAGGAACGTAGGACCGGGGGCTGTGCGGTGCGTGACATTCATGCACCTCGCCGTGGTGGAGGCCTGTGCCGGTGAAATCGTTGAAATCCTCAGCGAGTTCATGGGGTTGGGGCTCTTTGACAGGTGAATAGGTGCATGATTTATGAAAAACCGAGTGATTCCATGGGGTTTGGAATCTTGGGTAGGGCCTGGGAGGCGCAACCTGGGGCCGGGAGGGGGGAGGTGCTTGAAAAGACGGGAGTAAGTTGCCGGAACTGCTGGGAGATTCAGATGGGCT # Right flank : CTCCGTCTTCACCGTCATGTCGTCGTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 648-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOBT01000046.1 Myxococcus xanthus DZF1 contig_000046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 647 36 97.2 37 ...T................................ TGCTGACGCACCACGGCAAGCGGATGGGGCGCTGTCA 574 36 100.0 39 .................................... GTTTCCGACGCGCACGCGCTTGCGGTGTCCGTCCGGGTC 499 36 100.0 35 .................................... AAGGCGTTGCGCGCCACCATCTGGCAGTGCATGCC 428 36 100.0 35 .................................... CCGTGGCGGCACACCTGTACGGTGCCAAGTCATGA 357 36 100.0 35 .................................... AATCCTCACTGTACGAACAGCCCGCGCTGCGTCCT 286 36 100.0 36 .................................... GCCTGATGCAGCGTGGATACACGCTGAAGCCGCCTG 214 36 100.0 33 .................................... GAGAAGGGTGTCAAGGCTAGCATTGAAGGCTTT 145 36 100.0 36 .................................... GAGGTCGCTGCCGCCCTGCGCGCCGTGGGCTTCCAG 73 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 9 36 99.7 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : CGCGACCCCAAGCGGTGGCGGAAGGTGCATGCCCTGCTGAAGGGATACGGAGAGTGGCTGCAGCTCTCCGTGTTCCGCTGCTCGCTGACGGACCGGGACCGGGAGAAGCTGCGCTGGGAGCTGTCGCGGCGGATGGACGCCGTGGATACGTTGCTGGTGATTGGGCTGTGTGGCGGGTGCGTGGAGCGCGTGCGCGCCATCAACGCGAAGGAGGACTGGCCGGAGGAGCCCGCACCGTTCAAGGTGCTGTGAGACGGACGACAATCAAGCACCTCGCCGTGGCGGAGGCTCGCGATGGCGAAAGTGGCGGATTCCCTGTCGTTTCATGGGGGTGAGGCTCTTTGACAGGTGAATAGGTGCATGATCGATGAAAAGCCGAGTGGTTTCATGGGGTTGGCGATTCTGGGTAGGGCCTGGGATGGCCAACCTGGGGGAAGGAGGGGGAGGTGCTTGAAAGGGGTTTGTAAGGTGCCGGAATTGCTGGGGGATTCAGGCGGGCT # Right flank : CGCGTCTATCGCCAGGACAAGGGCTGTGTGTCCTTGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 22894-22500 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOBT01000046.1 Myxococcus xanthus DZF1 contig_000046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 22893 36 100.0 34 .................................... CTCGCACTCGACGCGAGACGGCGCCAACCCACCA 22823 36 100.0 34 .................................... GCTTCTCCGTCCTTCTTCTTGTCGTCTGCCATTT 22753 36 97.2 39 ...................................T GTGGTCCAGTGGTCGCCCTTCACGCGGACGACGTCGGGC 22678 36 97.2 37 .....................C.............. AAGGCTGGTATCCGTGACGCGGAGCGCTTGGTACGCG 22605 36 94.4 32 ..C............................C.... TAGTCGGTTCCGCCATTCTGGTGTTGCCAGAC 22537 36 94.4 0 ...............................CT... | CG [22533] ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 97.2 35 GTGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : GCTGCGAATGCAGTCATCCAAG # Right flank : ATCTGGAAGCTGCGAGGCCATCCTGCTTTCCAGCAAGGTCGCGCTCGCCGTACAGGGCCTCCATGAGCGAACATCAGGTCTACGAGTTCGTGGCGCTGGACCGGCCCTTGACGGCAAAGCAGCTGGTCGAACTCCGGGCCATATCGACGCGGGCCGAAATCACACCGACCCGGTTCTGGAACGAATACCACCGGGGTGGCTTGATGGCGGACCCAGCCCAGCTCCTCCTGCGCTACTTCGATGCGCACCTGTACCATTCGAACTGGGGCGACCGTTGGCTGATGCTGCGCCTGCCGCGTGAGGGGCTCGACATGAAGGCGCTCAAGGCCTGCTTTCCGGCACGAGGTCCATCAACGCTCACGGTGTCTGGGACCTCCGTGTTGCTCGACTTCCAGGTGAGGGATGAGGAGCCCCCGGACGAGGAATCTCCGCCCGCCTCGCTCGCGGCGCTGGTTCCGCTCCGGACCGAACTCCAGCGCGGAGACCTGCGCGGGGCCTAT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //