Array 1 7142-5771 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMDP01000001.1 Escherichia coli strain MOD1-EC6062 MOD1-EC6062_1_length_259170_cov_31.7935, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7141 29 96.6 32 ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 7080 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 7019 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 6958 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 6897 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 6836 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 6775 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 6714 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 6653 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 6592 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 6531 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 6470 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 6409 29 96.6 32 .........T................... CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 6348 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 6287 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 6226 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 6165 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 6104 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 6043 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 5982 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 5921 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 5860 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 5799 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 127361-126050 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMDP01000008.1 Escherichia coli strain MOD1-EC6062 MOD1-EC6062_8_length_181812_cov_33.5523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127360 29 100.0 32 ............................. AGGGCTGGTGTATTCGGGTAACTGGTTTGCTG 127299 29 100.0 32 ............................. GCTGGCCCCGCAGTGGTGTGAGCTGGTCGCAA 127238 29 100.0 32 ............................. CGAGAACAGATTAGTAAAACCCTTCTGACTGC 127177 29 100.0 32 ............................. GGTAAGGCGAGCTATCGCGAAATTGCGGCCCG 127116 29 100.0 32 ............................. TCACGACGCCCGCCGCACGTTCGGCAGTGTGG 127055 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 126993 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 126932 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 126871 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 126810 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 126749 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 126688 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 126627 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 126566 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 126505 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 126444 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 126383 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 126322 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 126261 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 126200 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 126139 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 126078 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //