Array 1 33936-35763 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSTF01000019.1 Vibrio cholerae strain 2012Env-32 NODE_207, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33936 28 100.0 32 ............................ TACCTCGGCAGGATTGCCACACCATGTGTCCG 33996 28 100.0 32 ............................ AGTGCTTCGGTAGTGGCCAGCATGATATTGAC 34056 28 100.0 32 ............................ ATAGATGCGCCATTCGCATAAAAGCCCTTCCA 34116 28 100.0 32 ............................ AAACCAGAATTGGATCAGTTGCTGAAGCGTTA 34176 28 100.0 32 ............................ TTCATAACAACGCCAGTAGTAATAATGGTTTT 34236 28 100.0 32 ............................ GTTCAAAAATGGTGATTTAGTTAATGAATCTG 34296 28 100.0 32 ............................ TTCTCGCAAACGTGGGAAGAAATGCTCGAATC 34356 28 100.0 32 ............................ GCCGTGTGGGCTTTTGATAGTAATGGCCTGCG 34416 28 100.0 32 ............................ ATTATTGATACTGCGCGCACTGAAGGTGTGAT 34476 28 100.0 32 ............................ AGGGTTAGGCTAAACGAATTCCATCATTTTCA 34536 28 100.0 32 ............................ AGAATGCACAGAACGCGCTTCCCCTTGTAATT 34596 28 100.0 33 ............................ GCCTCGCGAACCAGAATAAAAAAGCCTTCATGG 34657 28 100.0 32 ............................ TTGGATCCCCCATGGCTTGTGCACCATGATTC 34717 28 100.0 32 ............................ AACCGGAGTAGAGATTCACGCAGGACAACTGC 34777 28 100.0 32 ............................ GAACAAACAATCTTTTTGGTGTTGTTCACGAT 34837 28 100.0 32 ............................ TAAACTGCCCAGCTCTATGTTGTCACCTGCCA 34897 28 100.0 32 ............................ ATGCTCAGTGTTTCCGGTTGAATGCCCTGTGC 34957 28 100.0 32 ............................ GCAAAGTAAAAAGCTTTGGTTCCCATTTCTGG 35017 28 100.0 32 ............................ TTGGCGCGGCAATCAGCGATCAATTTCTTGCA 35077 28 100.0 32 ............................ CTACGGCTTTTATGGCAACGGTAATGTCCATC 35137 28 100.0 32 ............................ GTGTTGCATCGTGAGCGCGGCAGATTTCAACG 35197 28 100.0 32 ............................ CGTTCGCTGATGTGGAGTTAAGCACGATTGAA 35257 28 100.0 31 ............................ CTTTGCTGGCGGTGTCATTGCCGCCGAACAA 35316 28 96.4 32 ...........T................ GTTACAGCAACTTCATCGTCAAGGCGAGCGGC 35376 28 96.4 32 ...........T................ GTTACAGCAACTTCATCGTCAAGGCGAGCGGC 35436 28 96.4 32 ...........T................ GTCGTCAGCTTCCGTAAAGAAACGCGCCGCTT 35496 28 96.4 32 ...........T................ TTTCTTGTACTCTCTTTCGCGGGTTTTAATGA 35556 28 96.4 32 ...........T................ AGTACGCTAGCTGGAACTTTTCCAGCCCAAAA 35616 28 96.4 32 ...........T................ TTCTTGAATGTATTGCGCTATCTCTCCAACCC 35676 28 96.4 32 ...........T................ AATACGGCCATTGGACAAAGCATTGTTGAACA 35736 28 89.3 0 ...........T.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 31 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTGACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAATATCGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAGACCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAAAGTAATGAGCTATTGGATTACATCAGTTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTTTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCACTGCGTACCTGGTTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 31767-32515 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSTF01000051.1 Vibrio cholerae strain 2012Env-32 NODE_164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31767 28 100.0 32 ............................ AAAGTTGGACTTTAAAAGGCAAAAAAAACTAT 31827 28 100.0 32 ............................ AATTTCTAGCGCCGCATCAAGTGACATTACCT 31887 28 100.0 32 ............................ TGAATAATCTCTTCTTTCGAGATGTCATGCAC 31947 28 100.0 32 ............................ TTGCGTGTATCGGACACACTTCCATCTTCCAC 32007 28 100.0 32 ............................ CTACAGCGATGAGGTGATTAATGCGGGCATTG 32067 28 100.0 32 ............................ AAAAGAAATGCAAATATGCTTATAAGCTATGT 32127 28 100.0 32 ............................ TAATGCATGTGTCACAAGGCCAACAACCCCCG 32187 28 100.0 32 ............................ TTTATTCGCCACAACTTGAAAGCTGTCAGTTT 32247 28 100.0 32 ............................ AGCAACCAAGCAGTAAACGATGCATTTTGCCA 32307 28 100.0 32 ............................ TTGACACAGATGATTGGGTCTTGATTAAGCTC 32367 28 100.0 32 ............................ ACGGTGAAATGGGTGGTTCATCCAAAGGGTTT 32427 28 100.0 32 ............................ TGTTGTGTATCGGTCCTGACCGTTCTGATCTT 32487 28 92.9 0 ......................G.A... | T [32507] ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATCAATAAAGAAGGTGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGACTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTTGAATTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCCTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : ATCTTTATATATCCTATAGTTGGGGTTATATAAATGACAGTTTGCGTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAATTGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGAAGAACTCTCACCAAAATCGACCATTAATGCCACTACGGATATGAGTCAGTCTGCTTTTCTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGTAACTACGATGTGACGTTAGGGGACACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGTTCACTGGCTGGCCTTGGTGAACTCTCGGAGAACTTCCTTGGTGTGGGTGAGGGCTTTCGAGATTTGATGTCGTCTGGCTCGGATTATCTGCAAAAGAGTATGACTCAAGATGGCCGTGACGCCCTGAACTCTCGTATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7322-6934 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSTF01000009.1 Vibrio cholerae strain 2012Env-32 NODE_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7321 28 100.0 32 ............................ TCCTGCGATAGGCACTAGCCGACCGCCAGACG 7261 28 100.0 32 ............................ CTTACGCCTGATTGCCCGTCAATGTAATAAAC 7201 28 100.0 32 ............................ TGTGTTGTAAGCATCGTTATACGTCAGTTTAA 7141 28 100.0 32 ............................ TCAATTTGTTTAATGAGGCCTTGAGCGTTCTC 7081 28 100.0 32 ............................ TGACATGGTCGGCCTTCGCATCATGCCCATTG 7021 28 100.0 32 ............................ TTATCCAAGGGATAAAAAAATGCAAAACTTTA 6961 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCCGATGGTAACAAACAACCTAAGGTCGTTGTGAAAGTTGTAGTTGAAAGCGCATACTTCCATTGTGCTAAAGCTATTATGCGTGGGAAGTTGTGGTCTAACGATTTTCAAGTTGATCGCTCAATATTGCCATCATTAGCTGAAATCATAAAAGAACAGCAGAAGTTAGGTGGAGACTACGTTAGCCAAGCCCAAATGCTGGCTTACTACGAGTCTAGTCTTTAGCACGTGTATAACAAACTGTTTAAGAGTGATTCGCAACGCGTGGCATTTTTACTATGCGTTGTGTTTGGTGTTTAAGGTGGTATGGGGAGCTTCAGTATTGCGTTGCTCACATCTTAACAGGGCGTTAACTGGCAATGAAATTGCCCATCTTTTTTCGTTGATTTTTAAGCTGTTGATTTATATCAACAATAAATCGAGTAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATAG # Right flank : TATTTGTAACTTTCGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAGAGGGACTGTCAACGCGCGGCGTTTCCAGTCCCAATGAGCCGCAGTGGTTGCAGTTGTTGTGTTTGAGTTTAGTGGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTATGTTTAATCAGTATCACAAATTGTCACTGTTTTTATATACAGTTTTATGTGTTCGGCTATCATCTCGAGCTTTGAACACATTCGAAGAATTAAATATGACCAACTATCTAGAGCGTGGCATTAAAGAACTCGTTGAAGAGTTCATTTCTAGTGGAAAACCCTGTCCATCAAAACAAACTATTTCTGAGCGTCGGGCAGATTATCTCTCAAGTACGGTTTTGGCTGGCTCAAGTCCTGAAATGGCCGATGAGTTTGTTGATGAACTGGATGGCATACAAGTCAAAGTTTATAAGCCAAGCGATAAAATTGATTTGCCAATTACAATTTATTTTCATGGCGGTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //