Array 1 25638-25073 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJP02000015.1 Enterococcus faecalis strain Ca-18 E877C6autoPATRICm_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 25637 37 100.0 29 ..................................... TTTTTTCAGTTGGTGTTTCAGGTACAATG 25571 37 100.0 29 ..................................... TCATATTGTGTTTCTGAAATGAAATAACT 25505 37 100.0 29 ..................................... GTTCAGTAATATCATAATCCCATTTAACT 25439 37 100.0 29 ..................................... TTATTTTTAACCCAGTCGGCTGCGTTTCC 25373 37 97.3 29 ....................................A TTTTCTTAATATCCTGCTCCATAGCCACT 25307 37 100.0 29 ..................................... CCGCCTATGATTACATCGCCTAGAACGTT 25241 37 97.3 29 ....................................G AAAAGCAGTTCGAGCGGAAACTGCGACCA 25175 37 94.6 29 ....................G...............G ACTTACAAAAGACTGTGATTTACGTTATA 25109 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 9 37 98.5 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CATATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : AACTTTTTTGATTTGGCTTTTTCTCCCCTGTTTTATAGTCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTTGGAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGGAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 151220-151410 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJP02000005.1 Enterococcus faecalis strain Ca-18 E877C6autoPATRICm_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================ ================== 151220 26 100.0 28 .......................... AAGGTGGTGATACAGGTATAACAACGCT 151274 26 92.3 28 ...G...................T.. AAGGAGGCAATACAGATACAACAATGTC 151328 26 100.0 28 .......................... GAAGCAGTGATACAGGTACAACCCCACC 151382 26 80.8 0 G.T....A....T.G........... | TA,C [151402,151405] ========== ====== ====== ====== ========================== ============================ ================== 4 26 93.3 28 ACCAGAACCAGGAGATAGTGGAACTG # Left flank : CAAAAAATTAATCAATATCAACCGTTTCTTCCCGATCTCAATCGAAGTGACGAAGCAGTTGTCTTTGCTAGAGAGCTTGATTATCAAATCGGAAAATCAATAATTGGCTCAGAAGAAAACAAGCAGTTAAAATCGTTATTCACAAAAATTGAGCTTTCCTTTGGAAAAGAGATAATGAATGATCCGAATAATGCACATTTGAAGAAGTTATCGCTATCACTCAACGAACCAAATAGGCAACCTACTCAATCACAAGAAACACCTAAAATACAATCAGCACCACAACGTTCAATAAAAATGCCATCAATGTAAAGGAGAAGAGAAATAATGAAGAAATTTATATTAAGTAGTTTGTTTAGTGCAACTTTATTAGTAGGAGGTGTGTCTCACACTGCTTTTGCGGAGGAAAATTTACCTAGTAATCCTACGACCCCACCAAGTGAAGAAGTGATTCTACCGTTTACTGAAGACAGTACAACCCCAAGTGATCCAGTTCTTCC # Right flank : GGCGATAGTGAGCCAAGCCAAGCAACGCCACCAAATACAGAGAATAGTAATGCAGGTAGTAGTGATACCAATAAACCAACTCCACCAAGTTCAGAAAATACCGACACTGGACATACAGGAACGACTCCACCTACAACTCATGTGGGAGTAAATTCAGACGGGACGATCAATTCATCGGGAAATGGAGCACAAATGACTCCTATTCAAACGAATGATGTGAATGAATTGACACACATTCCAACAGCTTCTACGCCAGTTGAAACCGATACGGGAGAAAAAATCGTTTCCGTTGTAGACGGTGTGGCATACAAACAAGCAAATGATGGGACGTTGACGCCTATAACGGCAGAAGTGAAGCAATTACCTAGTGGAAATATTACAGTCAAAGGATCAGATGGCCAATTAAAAGTTCTACCAAAAACAGGAACAAAACAAACAGTTATGATGACGGTATTAGGTAGTCTTCTCACGTTAGGTTCAGCTTTTGTTTGGTGGAAAAA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGAACCAGGAGATAGTGGAACTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //