Array 1 34-197 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUEI01000016.1 Paenibacillus sp. IHB B 3415 contig_016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 34 32 100.0 33 ................................ CATGCTGTTCACCTCTTATCGTTATTAGTTTTT 99 32 100.0 35 ................................ ATCACATCCCGGGTCAATCCGAACCTCTCCTGGTA 166 32 90.6 0 ...................C...AT....... | ========== ====== ====== ====== ================================ =================================== ================== 3 32 96.9 34 GTCGCTCCCCGTGCGGGAGTGTGGATTGAAAC # Left flank : GCCAATACAGGAGCAACGGCAGGCACATACACCG # Right flank : CAGGTTAAAGGCCTTTTTGTCGATGCCTACTTCGAGGTAGCTCCCCATGTGGGAGTGCAAAATTTGCGCTGCACTTAATATAGAGCGTCCCCTCACTGGGCGTGAATCTAACTGCCAGTCCGTTCTAACATCCAAAGGCTGCTTTCAAAAAGGCATAAAAAAAAGCTATCCCCAGAATGAATATGGAGATAGCTTTTTTGTGCAAACCTTTAACCACAAGTTTCAATCCACGCTTCCTTACAAGAAGGGAGCGACAATAGTACTTCACTTATATTATACGGAGGGGTGAAAGGTTGCAAGAAATCACGGTATGGGATATTTCGGATTATATTGGATTTTTATGTATACACCAGATTGATAATGAGTTAAGATGAATTCGAAGATAAAAAATATTAAACTTTTAAACACAAGAAGATGTTAATTCAAAAGGCAGGATATTCTTTATTGCTTTTCAATATAATATGATTTTATTTTATTTGGCTTCTTTAGACACCACTCAA # Questionable array : NO Score: 8.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 8775-9868 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUEI01000016.1 Paenibacillus sp. IHB B 3415 contig_016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 8775 32 100.0 35 ................................ TCGTTCATGTCATACAGGTTATCGGCGTATTCCGC 8842 32 100.0 34 ................................ CTCCTGCTGTTCCGGTTGTTCCGGCTCCGCTATT 8908 32 100.0 33 ................................ TCTGTTATTGGCACTTCATACGATCCATAAAGC 8973 32 100.0 36 ................................ AAACTCTTGCTTCTCTTGTGCGGTCATTTCTTCAAT 9041 32 100.0 33 ................................ CAGCGAAGATTTTTGAGCACACGGCCCACAAAG 9106 32 100.0 35 ................................ CAGCCGATTATCGACCAAAACCTTGAGAGGATTAA 9173 32 100.0 35 ................................ GCAGTATTGTAAATCTCATACCACGTACCTGTGCC 9240 32 100.0 34 ................................ CCGGCCCGGATCGGCACTGGCTAGATCCGCAGCT 9306 32 100.0 33 ................................ ACAAACATCCTTGGAACCGGTAATAAGGTCTTC 9371 32 100.0 33 ................................ ACCGGAACGTGCCCTTCCAGGTTCTTTTTGGCG 9436 32 96.9 34 ..T............................. ATCTTTGCTCTCCAGTTGTTCCACAGTTTCCCTT 9502 32 100.0 34 ................................ TAGTCTAGGGCAATGATGACTTGAATGTCCCTGA 9568 32 93.8 35 .........T...T.................. GGTCAGGTGTTTGCTTTTAAAGCGGACAGCAAAGG 9635 32 84.4 34 .G..T....T....TT................ GTATCTCATAGCCTCGTTTCTTGCTTCTGTCATA 9701 32 93.8 34 ..........A..T.................. TGCAATTGACCGCCCAAGCCATGTGTCTGGAAGA 9767 32 100.0 36 ................................ ACAACTATTACCAGACATTCACAGCAAAGAGGCGTG G [9785] 9836 31 84.4 0 .G.........C..CA.........-...... | GC [9847] ========== ====== ====== ====== ================================ ==================================== ================== 17 32 97.3 34 GTCACTCCCCGTGCGGGAGTGTGGGTTGAAAC # Left flank : TCCGCCATTTTTATTTAAATAGGAGGAAGCTGCAGCAAATGATGGTTCTAATTACGTATGATGTTCAAACCTCAACACCTGGAGGTCGCAGAAGGTTACGGCGAATCGCCAAGCATTGCCAAGATTATGGCCAGCGCATACAGAATTCCGTATTTGAGTGTGTTGTTGACCCAGTCCAGTTTAAGCAGCTAAAGCAAAAGATAGAATCAGAGATGGATAAAAGTAACGATAGCATCCGCTTCTATATGCTTGGAGCTAATTGGAAAAGAAAAGTGGAGCATATCGGAGCCAAAGAGAGTTATGATCCTGAAGGTTTTCTCCTCCTCTAAGAAAAGTGCGAACCCCAAGCGCACATGAAAATGCCGGGCGGTTCGCACCTCTTATGGGATAAGGGATTTACCTCATATTCTTAATCTTGATAAATGGTATTGGCAATTAATAAAGAGGTTCGCACTTTTGTGCCCTTTAACCCTTATGTAGCAAGGGATTATTGGGCATCT # Right flank : CAGAATCGTAAAATATTATCGGTGATGATCCCGTGTCATTCCCCTTACGAGAGAGAGCGTTAATTAAAAAGGGAGGGTAAAGGAAGGTTTTTTGATATAGTGGCGACCCTCCAAACGTAGTAAATCAATTCAACTCGAGCCCCAATCACCACGTTCCATGTGACTTGCTCAGATACCCAAAAAATCAGTACATATCCCACAAGTGAGTATCGTACCAGATCCATACATGTTAAAATAGTAGAAATGTGTTGATCAAATCTACATGCAGCGGGTGAATGGATTGAGATTAAGAGATTTCATGGGCCCCTCGGATACTTCCGCACAGCGGCAGGCCAAGTGGATCAAGCGTTTTTTGCGTACCTATTGGCTCGTGATTGCTCTGCATTTTGCTGCGCAGCTCTGGGCTTTTCTGTTTCTTTCATACCCAATGGGCCCGCATGAATTTTATTATGATGTCCTGCTGTATCCGACGCTGCTAATGAGTGCGGTTGTCGGGGCGA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGTGCGGGAGTGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 9790-10634 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUEI01000042.1 Paenibacillus sp. IHB B 3415 contig_042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 9790 32 93.9 35 ................G..-............. TAGAGTCTATGGACGATAGCGTGAATAGCGTGGAG 9857 33 100.0 35 ................................. TTAATACCGCTGGAACTGAATGGCTTTTTTGTTAT 9925 33 100.0 34 ................................. GTTACGGACCGGATAAGAGCATTCCGTTCCGAAC 9992 33 100.0 34 ................................. CACAAGTACCTCGGCGAACAAGGCGACTACACTC 10059 33 100.0 36 ................................. GTTCCCGAAAAATGCGCATTACCATAAGCGCTAATC 10128 33 100.0 36 ................................. TTCGGAGTAAAGTCATTCTTCGGTGCTGGAATTAAC 10197 33 100.0 35 ................................. TCGAAAGAAGGATCCGAAAGCTCGCCGGTCCAAGG 10265 32 97.0 34 ..............-.................. CCCAAGGACACGAATATACCTCTGATATTCGGCC 10331 33 100.0 35 ................................. CCACCACCTAACCGCGAGACCGTCCACAGCGAGGT 10399 33 97.0 33 .........T....................... AAAATGACTATCAACTTGGAGGCATATATGATC 10465 33 100.0 36 ................................. GGCGATATCATAAAAATTCTCGCCCATGTTTTGGTT 10534 33 100.0 35 ................................. AGATCATAGTGGCCCCAGGCGACGATGGCGTAGAG 10602 33 69.7 0 .........A.....ATA.A...AA.A.A...A | ========== ====== ====== ====== ================================= ==================================== ================== 13 33 96.7 35 GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAT # Left flank : ATCCGGTTTGCCCGTTGGTTCCTCTACTTGCTGACCGCGCTCATTCTGCTGGTCATTTTCCTCGGCGTGCCCCAGGCGGATAATCCCATATTTTCACTGCTCAGCTTTGGCCTGCTGCTGTCTCTTCTGTATATGGCGGCTGGTCTGGCCCATCCCTCTATTGTATTTTTCCGGAAAAAACGTTCCCGAATGTTTGCACTCGAACTGTTCGGGCTGATCAGCGGTTTGCTGATTCTACTGATGACGGTTTTTCATACTTAGGAGGGAATTAATTACTTTTGCAGAATATAATCCTGGATCAACAGGTAGAAGATGATCAGTGCGAATGGCAAGCTCCCATGAAATCCCCGGGTCCTTCGCACCTCAGAATTTGACGAAACCTTCTAAGTTAGCGATTGTTTAAGAAAAGTCAACGGCTGATCGATACTTATTGTAGTATCGTTTCGGGGAAAGTGCAGTGAATTGATGCAGGAACAGCATGGAATGTGCTGCTTTCCGCT # Right flank : AAACAGATCATGTCCCGGAAGTCAGGCATGATCTGTTTTTCAATTCATTTGCTTGTAACCTTACAATAAGCCTTGCATCGAGAATTATTCAACATCAGTTGCCGGCTGCAGCCAACGCGATCCCATTACAGGCTCTGCTGTAGCGGTGTAGCCTTCGGGCAGATAAGTGGAGACCGTCCCTTTGGTGATGACTTGCGGGTACATCATATCCGGATCGGGCAGGGTTATTTTGAAGTAGATCACTGCTTTGGTGGCACTTGTGAATTCGATGCGCTCCACCGCCAGGCCGTAGCCGGGGTTAGGCAGATTATCGACGGTGATGGTGGCTTTATTGACGCCTTCAGCCGCTTTTTCTAGTACGACATCCGAAATGTAGTTATTGACCGGAACTGGTTCCGGTTCAGAAGGCTCAATGACTGTATCGTCTTGGTTGATCACCCGCGCTGCAAACTCAGCGGCATCATGAACCATAACAGCAGCCTCGGAGCGGGTGATGATAT # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 33051-34032 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUEI01000042.1 Paenibacillus sp. IHB B 3415 contig_042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 33051 33 100.0 37 ................................. TACTTCATCCGGCTCTAAGCTGGGCATCACGGCGGGC 33121 33 100.0 36 ................................. TCCAGACCGCCTACAACGTTTTTAAAGATCGGTGTC 33190 33 100.0 34 ................................. TACAACAATATGTTATGGTCAGAGAGCGCTGGGA 33257 33 100.0 34 ................................. CCATTCCAGATACTTGGCTGCGTACACTTGATTT 33324 33 100.0 34 ................................. TATGAAGACATGTCGTTTTTGCAAGGGTAGAGGA 33391 33 100.0 33 ................................. TGCTGTATCATCAATCAATGCTCCTCCTTTGGT 33457 33 100.0 36 ................................. AGTTCAGTTCTATTCAGTTCAGAGGGAATTGTCGGG 33526 33 97.0 36 ....................T............ GATCCGGATTACAATACGCCAATACCCGGCGATCCT 33595 33 97.0 35 ....................T............ CACGAAAGAGGGCGGGGACGCCTGGAGACGGGATA 33663 33 97.0 34 ....................T............ CTTTAATCCCTGAGTGGGCGCTGTCCGCCTGTGA 33730 33 97.0 35 ....................T............ CATGTAGCTTCCCGGCAGATTAGTTGTGCTGCCAG 33798 33 97.0 35 ....................T............ TTGGTCACTGTCCGTTATGGGTGGAGGTGTTGGCT 33866 33 97.0 34 ....................T............ CTCTTGCAGCTGCTCATACCGCTTTGGAGGTATT 33933 33 100.0 34 ................................. ATCGGAACCAAAAAGGACAACTCGTAATCAGAAT 34000 33 90.9 0 ................G.A..........G... | ========== ====== ====== ====== ================================= ===================================== ================== 15 33 98.2 35 GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAT # Left flank : AGGATGTGGAGCGTATCCAGCTGCTGATGAATGCCTGAGGACGCTGATCATAAGCCGAGGCCCCACAAACAGCCGGACCGTACGCGATGCGCGGGTTGGGCTGTTTGTGGTTCTGAATTCAATGAGATATTCGCTCTGAGTCCACCGGAAAGTGGGCCGAAGGAAAAAATGAGAGCATTAGGGCCCTTGATTTCTCGTGTCTAACCTGAAAGTAGAATAGAGCAAATGTAAGGTTGTCTGAAAAACTATCCAGGCTTCATAACTAGCTCCGGTCGTTTGCAGATTAAAAGCAATAGAGTAAGATAGGCTCTGAGAGCTGGTGCGAATGCCAAGCTCTCACGAAATCCCCGGGTCCTTCGCACCTCAGAATTTGTCGAAACCATAAGGAATAGACAGTGTTTATATAAAGTCAACAATTGATTGATATCCTTTCTAGTATTATATTAGCGGAAGAGTAGGGAATTAATATGGAAAAGGCATAGGTTATGCTGATTTCCGCT # Right flank : TTCATCGAAAAGGCGTTTTGCTGGAATTTGATCATGTTGCACACCGTATTTTATTGACAATGCAAGCAAAACAAAAGCACTGAACTTCCGCATAATCAGCAGAAATTCAGTGCTTTTTCATAATCCTAGACTATTCTTTACGGCGTATTTCAAATAAATCGTTAGGGGTAACTTCAAAGTAGAGGCATAACTTCATAATTAACTCCGCTGAAATTTTCTTCTTTTCCATATTCGTGTTGTGCATTAATTCCATAATTGTTGTTCTGCGGTGCCCGATCTCTTTGGACAGTTTTAATACAGATATATCATGTGCCTTCAATATTGTGTCCAGTTTGCAGTAGAGAGTATAGTCTTTAAATTCCATATGGCTCCTCCAAAATCGAAATTAGTTGCACTTTTAAAGTGCATATTGTATATTGTTGATATAGGAGTTGAACTTTAAACGTGCAATTCATATGTGAGAATTTTAGTGGTACGCTTTGCAAATATCCTTGAGAGCA # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCCGTGTGGAGTGTGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 3 35490-35720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUEI01000042.1 Paenibacillus sp. IHB B 3415 contig_042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 35490 32 100.0 34 ................................ CTACATAAGGTTCATCTTTATGCCAAGAATGAAA 35556 32 100.0 35 ................................ ATTACCCGATAAAAGGTGGTATGAAGCAGGTAGAT 35623 32 100.0 34 ................................ GATAATACTGCTCTGTAATAAGATTCTGCTTTTC 35689 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 35 GTCGCTCCCCGTGCGGGAGTGTGGATTGAAAC # Left flank : GCTGAGCTGGCCGTTAATTTTAGAAAAGCAAATCCTACTCTAACGTTAATTGAAGCTATCGAAAAGGCAGAGCGAATGCAAGGTATTACATATTACATAGGTGCTTGAATGAAAGGTTCAACATACCGGAATAATTCTCATCATAAAAAGATTATAGTAAAGCGATCAAGCTACAACTTGGTCGTTTTTGTTTGGCTAAATGTTGGTTCTTAGTAGTAACCGTAACTAATATAGTTTTTGATATTGGACTTGCTGCGGTTGGAACTGCTCTTTGGCTGAGTTTCAAAATGGATTAACCACATATCAGAAATGGGCTGTTATTATTTAAGAAAATTGCGAACCATAAGTACACATGAATTCCTTGGGAGGTTCGCACCACTTATGTAAAAAGGGAAAGTGTAAGATATGGAGAATATATCTAATAAGAAACCACCTTAATTGTAACGGTTCGCACTTTTGATAGTGTGGCCCCGTATGCTGCAAGGGATTTTTGCTATACT # Right flank : TAGCCAATACAGGAGCAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //