Array 1 27079-27847 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBS01000109.1 Alkalihalobacillus clausii strain 7523-2 contig00109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 27079 31 100.0 37 ............................... TGAACTGATCTGTAATAGAGTCAAGTTTGAACGAAAA 27147 31 100.0 35 ............................... CTCTGGGCAATATCGTTAGCTGCACGCTCAAACTA 27213 31 100.0 35 ............................... GTAAACCGAATTTAAATAGATCAGCATATTCCATA 27279 31 100.0 37 ............................... ATCAAAATGCAGTCCATAACTAAATTTATGGATCAAA 27347 31 100.0 36 ............................... TGTATGCAGCAACTCTCCCTCAGCACTAAAAAACCA 27414 31 100.0 34 ............................... GCTTATGTCGCCTGTCAACGTGTAACCAATTGCA 27479 31 100.0 37 ............................... AAACATGTGTTAAATACAGCAAAAGCGCCTGAAGAGA 27547 31 100.0 36 ............................... TTTTAAGTTAATGGAAAGTCATAAAGTACTTCAGGA 27614 31 100.0 36 ............................... GTCGAGGATTTCATCATCAACGCCGCCCATTAAGAA 27681 31 100.0 36 ............................... TTAATTTAATTTTGGCGTTTGAACGATACTTCTTGG 27748 31 96.8 38 ............T.................. AAGAATTGATGGGTAACCATGAGCGGAGTTGATCAGCG 27817 31 83.9 0 ............T.GT..........A...A | ========== ====== ====== ====== =============================== ====================================== ================== 12 31 98.4 36 TCGCACTCCTTGCGAGTGCGTGGATTGAAAT # Left flank : AGAGTGGAGGCGTTAACGAGTCGATATGGCGGATACGTCGATTCTGATATGATATTCTCTGCATGTGAGATGGCGAGCTTGGTACAAACGACTTCTTCTGGCTTGTACTGGAGTGAAATAAGCCGATACTCGAATAGAAGAAAAAAGAAAATGGATTTTGGTGGTTTGCTTGGTGCGATGACGTTTGAGGGAGACATGTATCACTTTGCTCCATGGTTATATGCCGCAAGTTGTCTACATATTGGTAGAAATGTTACCTTCGGCTATGGTCAACTTGATGTTGTGTTTGGATAAATGAGAAATCTTGTTTGAGCATCATGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTAAAATATGAAATAATATGTGTAAAAGTGTTGAAATGTTGTTAGTTTCCCATGATATTATAAAGGAAAGCGGCGGATTTTCCCTATTATTTATTGTTTTGCTTCAAAAAATAGGGGGATTTCGCTA # Right flank : ATATATTTAGATTGATAAAATGTAAGTCCTGTTTTATTAAAAAAATGCCTGTAACTAAACAGCCATTACGCAACGATCCGACAGTAATTGTATTCCAGTAAAGCCTATAAAAAGTAAGAAAGGCCTCGGCACAGATACCGAGTCTACAGTTTTTAGAATGGTATATCACTTTTGCCTGTTGATTTAAAAAAGGTACATTACTTCGCCCGCAGTTTTAGCAAAATTTGACGAGGATAAAATGGCAACGATGGCTGACAGTTCGTCCTACCATTTGATCAACGGAGGCCTGTTTCTGAAAGATAGTCTATGTTAACAATAAGGGAACATGCTATAATTGAAGAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCCGCGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGGATTTCCCTTATGTTGACGTTCGGACTTCTGATCGTTGCAATGCTGTCATTTCACAACCACAAAAAATAATCCACCCTTG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACTCCTTGCGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 38190-39617 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBS01000109.1 Alkalihalobacillus clausii strain 7523-2 contig00109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 38190 32 100.0 34 ................................ ATGTTAACCGCTCCTTTGTTTTATCGTTAATGCT 38256 32 100.0 33 ................................ ATTATTAATTTCAAGCTTTTCTTTAGTTATTAA 38321 32 100.0 35 ................................ ATCGTTTCGAGAGATATTGAGCGATCTGTTGAAAT 38388 32 100.0 35 ................................ TTCTATTAATAGCCTATTCAGGATGCCGTGTAGGT 38455 32 100.0 33 ................................ GACCACACTTTGAAAGATGCTCTTGCATCAGCC 38520 32 100.0 35 ................................ ATTGTCGTTAGATGTGGTCGTTTCCTCTTGCCCTG 38587 32 100.0 34 ................................ TGTGCGCGTGGTGGCATTAAACACACCAGTTAAC 38653 32 100.0 36 ................................ CATGCCGTGTAGACGGCCAGAACCGCGACAGCAAGG 38721 32 100.0 33 ................................ TAATTAAATCTTTTGCATCCTTCTTGCTGCGAC 38786 32 100.0 34 ................................ CCATCGTTATGCTTTTTCGCATAATCTAGAAAGC 38852 32 100.0 34 ................................ AGAGGGTGCACAGAAATTCTTTTTTACGAGTGGA 38918 32 100.0 34 ................................ GTTTCACGGGCGGCTGCGAAAGGTCAGCATTTAA 38984 32 100.0 35 ................................ TATGTTAAATCCGACCGTAAATACATCCGTTAAAC 39051 32 100.0 35 ................................ GTAAGCCCGGCCGTAAATGGATTGATCCAGTACTA 39118 32 100.0 34 ................................ CGGCATAACAAGGTACTTTGCCGGGAAAAGAACT 39184 32 100.0 34 ................................ CATAAAGGACAAAACTGCATACGGTTATTTATAT 39250 32 100.0 34 ................................ AGCGGGTATTTAAAGTTCCGAAAGAGACGGCCCA 39316 32 100.0 36 ................................ CCGCGTTCGTGATAGTTACGGCCTCGCCCACCTTAA 39384 32 100.0 35 ................................ ATACAGGCGAAGGGGCTCCGGAAGCAACACTAGGG 39451 32 96.9 35 ..............................T. TCCCTTTTGACTCGAAAGAAAAAGCGGAATGCTTT 39518 32 100.0 36 ................................ CATGTAGCTTTTATTGACTGGTATTACTTCGATCAC 39586 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 99.9 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : CGCCATTTTTGTGGAAGTAGGTGAAAACATGCTCGTCTTGATTACATATGATGTCCAAACGTCAAGCCTAGGAGGGTCCAAAAGGCTGCGCAAAGTGGCCAAAGCATGCCAAAACTACGGACAACGAGTACAAAACTCCGTTTTCGAGTGTATTGTGGATTCAGCTCAATTAACATCATTAAAACTTGAACTCAGTAGTTTAATTGATAAAGAAAAAGATAGTTTGCGCATTTACCGATTGGGAAACAACTATAAATCGAAAGTGGAACACATTGGTGCAAAACCAACCGTAGACATAGAGGATCCTCTGATTTTTTAATGGTGCGTACCCCAAGTGAACATAAAATCCCTAGGGGACCCGCACCAAAAAACAATCGAAATATGTGTAAATGTGTATTAATTTGAAATAAGATGTTGTTGATTTTAAATAATTAGAGTAGAATCAATGAAGATTTCCTACTTTAAGAGCTTTTTTCCCTTTTAATTAGAGGATTTCCGCT # Right flank : TTTTAAGCACTCCATCGTAGCAGCAGCTTGTACCTGTCGCACTCTTTATGACTTCGTGGAAAAACAGAAAATATCGGTTATGTACTAAGTAAATACAGAGGACGTGAAATTTTATATGACTTGGCATAACCAAGATCCTTTAAACCTGAGTAAGGAAGAGTGGATAAATCTCTTGCAGGATGAAAAAGTTTTCAACAAGATCGGCTTAGAGATAGTTTTCTTTGTATATAAGCAACCTAATTATCAATCAAATGCAACGGAAATCGGTGAAGCTTTAGGCGGAGTGTCGCAGCAACAGGTGACCGCCTGGAATCGTAGTATTGCCAAAAAGATCTATCAAAAGCTTCAAAAAGAACCGCCATTTAATAGTAGGGGTGGCAAACGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCTTGATGATAAAGGGAATTTTATCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 40377-42866 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBS01000109.1 Alkalihalobacillus clausii strain 7523-2 contig00109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 40377 32 100.0 34 ................................ GCATTGGTGCCGACTTTGTCACGGAAAACAACTT 40443 32 100.0 36 ................................ CAGGACTCTTAATTGATTTAAGGTGAAAAACTCGCC 40511 32 100.0 33 ................................ TTGCCGTATCCGACTTTCTCAGCACAGTCAGGC 40576 32 100.0 36 ................................ ACCTACACGTATTAATGGGTCAAAACAAAATCAAAA 40644 32 100.0 35 ................................ TTTTACTGGCATAGGAGCACCTTGATAAAACACAG 40711 32 100.0 35 ................................ TCGTAACGATCAGTGTATGCAAGCAACACAGACGT 40778 32 100.0 33 ................................ AAGGGTACCCAAATGACATTGTGGAAGTAAATG 40843 32 100.0 33 ................................ GCAAGTGCTCTCAACTCCTCCAATGAGAGGGGT 40908 32 100.0 33 ................................ AGGGCTATTGCACACGAAAACCCGTATATCGAC 40973 32 100.0 35 ................................ TTTGAGGTGTCGACAGATTATCTTCTTGGCCGCAC 41040 32 100.0 36 ................................ TTTTACTGTTTCATGCTTCAATTCATGTTTCAAGCT 41108 32 100.0 34 ................................ TCTACGGCCAAGCAGTCTGCTGCGTTTTGTATTA 41174 32 100.0 34 ................................ CGATCCGTGCGGATCATATTCCATCTGATGTAAA 41240 32 100.0 33 ................................ AGTACAGAGTCATTAATTGGCTCTTCTGAACTC 41305 32 100.0 33 ................................ GAGCGGAAAGCCTCGCTTCGTCCGGGGAGTAAA 41370 32 100.0 33 ................................ CGGGTTAACAAAAGATGGACCATTGAGAAAGTT 41435 32 100.0 34 ................................ GTTTTGGTTGCCGCTGCTAAACGAAGGCTACTAC 41501 32 100.0 36 ................................ AGGGGCATGTCGTTGATTTGCGGCATCCTAGCGAGA 41569 32 100.0 36 ................................ GGTCCGTTTTTGCGACCGTGAATGATGTCGGACAGA 41637 32 100.0 38 ................................ TCCATGAAGAAAAAGCCGACGAAATTAGGACGATACAG 41707 32 100.0 33 ................................ CCATAAATCCGTAGTACTGGTAAAAAGTCCTTT 41772 32 100.0 34 ................................ CGTACGCGTCCTCGGTGTAGTTATCGTATGCGTA 41838 32 100.0 36 ................................ GATAGCTGTGGTAAAGGTGTATTGTTTGCTGGACAC 41906 32 100.0 35 ................................ CAGAGAGCTAAAAAACTTACTATTGACGGTATTGC 41973 32 100.0 33 ................................ TTTGAATGCCTTTCGGTGTATAAAGTACTCCAA 42038 32 100.0 34 ................................ AACAAAGATAACCCTGTCCCGCTGCTAATCATGG 42104 32 100.0 35 ................................ AAAAAACGCCCAAACCCTCTACCTCTGGACTGAAA 42171 32 100.0 34 ................................ CGATTGATAATTCTTTAACAATTGTCGTGTAAAT 42237 32 100.0 35 ................................ GTACTCATTTTTGGTTGCTTTGTTTTGTTGCTTTA 42304 32 100.0 33 ................................ CATTTCCAGAGTGTATCGCGCCATATACTGCAT 42369 32 100.0 34 ................................ TAGTGGCGCCAGATCGTAAATTCATCATCATTAC 42435 32 100.0 34 ................................ ACATGCGTTATATCGTTGTGAGCCACAATTCTGC 42501 32 100.0 34 ................................ CCGCGGTCATTAAGCCGCCAAAACGAGCGGACTT 42567 32 100.0 34 ................................ CTCTTTTTAGTAGTGACAGTTTTTTCAGGTACGT 42633 32 100.0 33 ................................ CTTTTTCGTTTTTCAACGTTTTATGAAGAATAC 42698 32 100.0 35 ................................ GTTATTAAACAATCGCAACTCACTCAGTTTTTGCG 42765 32 100.0 38 ................................ AGTAGTTAAAGTTAAGGATGTCTGATGTGTAGTCCAAG 42835 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 38 32 100.0 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AAATCGGTGAAGCTTTAGGCGGAGTGTCGCAGCAACAGGTGACCGCCTGGAATCGTAGTATTGCCAAAAAGATCTATCAAAAGCTTCAAAAAGAACCGCCATTTAATAGTAGGGGTGGCAAACGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCTTGATGATAAAGGGAATTTTATCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTGATAATAAAACGGCTAAAATTGAGAGTTGAAGATTAAATCCCAAATTGCAGAAATATTTGTGGGGTAGATCCCTTTTATTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGTTTGAATATGAGATAATATGTATTAAAGTGTTAAAATGTTGTACGCGTTCCGTGTTATGATTAAGGAAAGAAGCGACTTTCCCTAATATTTATTGTTTTATTCCCAATAAGTAGGGGAATTTCGCT # Right flank : GACTCACCCTCTTCAACGTGCTTTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 47-275 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBS01000135.1 Alkalihalobacillus clausii strain 7523-2 contig00135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 47 32 100.0 34 ................................ TACAGTAGGGATGAAACCGAACGTCTTGGCCTGA 113 32 100.0 35 ................................ CATATAGTCCTGCCAGAAAATTTTCAGGATGTCCG 180 32 96.9 35 ..........T..................... CCGTTTTTAACATAATCCATCATGATGCGCTGAAA 247 29 87.5 0 ...........T.............---.... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 96.1 36 GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Left flank : TGGATTGAAATAATGGAAGCAGTAGTGTTTCCGCCTTTTCTAGGTCG # Right flank : TGTGGGCTTAAGATCCTTGCACGGTGTGGCTGTGTTTCCCCCATCTTATAAATGCGCCAATTAACATCCACATGAATCGACGTTCGCTTGCGATAACAACTAATAAAGGTACAGAAAACCAAATAAGCAATATGAGCGCACCGATGCCCATATTGCTTATTTTCGTTTTTATTGTCTATTTCAACGCTGGCCAAAATGCTTTATTCGCTTCGATTAAGTCGTCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTTGATAATGTGATAGCTTGCCAGAGCTTTTGGTAGGAACCTTCTTCAAACGCTTCTACTACTAATTTTTCGACACCAACTTGTTGCTCCATGAGGCTCTTTTGGAATCTAGGGATTTCTCCGACAACTAGTTTTTCTGGGCCGTTGCTGCCGACGAGGCACGGGATTTCTACCATTGCTGTTGGGTCAAAGTTCGGGATGGCGCCATTGTTTTCGACAATCATTAACATCCGTTCTTTT # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 6720-7219 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBS01000135.1 Alkalihalobacillus clausii strain 7523-2 contig00135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 6720 32 100.0 36 ................................ AAAGGCTTCGTGCGTGGCGTTAGGTATCAGCCCAGC 6788 32 100.0 34 ................................ TCCTTTTTTATGTTTTTTAGTTGGATAAAGAGGA 6854 32 100.0 36 ................................ CTCTACGATATACACCCGACCATTCGGCACAGCGTC 6922 32 100.0 34 ................................ TTCTCCAGCGCTTTTTGGAGCTTGCGGTCAGATT 6988 32 100.0 34 ................................ ATTGTCCCAAACAGCACGTCGTACAAACGCCTTT 7054 32 100.0 35 ................................ GTCCAATTCGCGCAGTAGACGGTTAATGCGCTGCC 7121 32 100.0 35 ................................ GTGGTATCAAGTTCGACGTAGAATCAGCGAATAAG 7188 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 100.0 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : GAAGAGGAAGGGGAGGCCCCGTTGGCGGTATATCTTGCTTCTTTTAAGCGAACGAATTTGGAGAATCTACTAAACGAGCTGGAAAAGGCGGCGAACTTGCCCGCGTATCGAACCAATCTGTTTGAACATTAATGGTGTGGGGACCCATGAAGGAGGCATTCCTGTGATCGAAGCATGGACAAAAAACACTACGAGACGATCCCCTCTAATCGTGGCTTTCGGTCATCTACCAGCTAAAAAAATGGTTCGTTAAAAAAATGTTGAGATAACTCATGGGTTGTTTTTCAGTTTTAACTTCCATCCCAAACACCTACCATTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGTACTCAAATATGGTTGAATGTGTGAAAGAGTGTTAAAATGTTGTTCGTATCCCATGGTATGATATAGGAAAAGAGCGGTTTTTCTCTAGGATTCATCCATTGGTTTCCAAAAATAGGGGGATTTCGCT # Right flank : TACAAGTTTTTATCCGATTTTATTTTGGAATCGATGTCGCACTCCTTACGAGTGGCTTGTCTAAATAGGGTCGAGAGCAGGCCCTACCGCGCTGTTACCCCAGCCTGCTCGCGGAAAATCCCTATTTATGCAATCTTGCAATTTCCATGCCTGGCGAAATGGAGCGACCGTTTTTATTGCTGTGATTCGTCTTAATAGAAAAAAGGACTAGCTACAGGAGGGATTGAAATTGGAAATTCGTACAGTGAAGGGCTCTGACTACTATGTCATTTCCCCACTAATTAATAAGTGGTGGGGTGGAAGAAAGATGTCGGATAAGTTACCGAAATTATTTTTCGACCATTTTTCTAATACAAGTTTTGTTGCTGAAAGGGATGGAACACCTGTTGGCTTTCTAATCGGATTCTTTTCTCAATCTCATCAAAAAGTAGCCTATATACATTTCGTTGGTGTCCACCCTGATTATAGAAAGCAAAGCGTTGGCAACCTATTATACAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 14505-15530 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBS01000135.1 Alkalihalobacillus clausii strain 7523-2 contig00135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 14505 32 100.0 36 ................................ AATAACTGCATCCTTGCCGTCTGTACCGTCAGTACC 14573 32 100.0 36 ................................ TAGCAATTTTTTGCTTGTGCCATATCCTTTTATAGC 14641 32 100.0 33 ................................ TTAATCTTCTGCATAAGTTCTTTAGTCGTCCTC 14706 32 100.0 33 ................................ TTCAAGGGACACAGAGGCAGAATTTTCTTTGCC 14771 32 100.0 34 ................................ AAATCAGCGGTAGACACAGAAAGTAATTGCTGGT 14837 32 100.0 35 ................................ GCTAGAAGAGTGGTTCAAAAATCGAAAAGGAGCGT 14904 32 100.0 35 ................................ TTTGCCTTCGACTGTTTTTCTGATTTTGGTGTCAT 14971 32 100.0 35 ................................ CAGAAAGTCAAAAATTACGAAAACCGAACACCCTA 15038 32 100.0 35 ................................ GATCCTTTACGAAGCCGACCACGCGGAGCAAGTCG 15105 32 100.0 33 ................................ GTAAGTCTTGCCCGTCTCACGCGCCAGCTCCAT 15170 32 100.0 34 ................................ GGCATGCCTACGTCTCCTTGTACAGTATCAAGCA 15236 32 100.0 33 ................................ GAGGAAATCAATAACGCTCCACAAACGTTTTCT 15301 32 100.0 34 ................................ GCTCACTCCTCCGTGTCTCCATTTCGGTCGCTAC 15367 31 96.9 35 ..............-................. TGCTGCAAAATCGTTCTATCACCTGATGCCTGATT 15433 32 100.0 34 ................................ CAGTAAGGAGGAGTAGTGTCATGAAACATGATTT 15499 32 75.0 0 ..........TCA...C...A.......C.CC | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 98.2 34 GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Left flank : GAAATGGCAAAATCAAAAATCCGCATGGTTGGCAGTGAAAACACGGTAGTGCCAGCATTTGCGTGAAAAGCGTAAGCCCGGAGTCCTTCACCTTCGCTTGTTAGGCTATGTACTAACAAGCGGAGGTGTTTCTTTCATTAATTGGGAAGGGGGAGAAGAACTCAATCGAATAGGTGTATAAGCAAGGAACTTTCCTTACGCCAACAGGAGTTTTCTTATCAAATATAGTAAAATAGACAGTAGTAGAGACAGACACAATTGACGAGGGAGATTAACATTTACAATTATTCATTTTAGTATTTTGAACCTGTGATTCTTTAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTGAATGTGGGTTAATGTGTGAAAAAGTGTTAAAATGTTGTTCGTGTCCCATGGTATTATATAGGAGAAGAGCGGCTTTTTCCTATTATTGATTGTTTGGCTGCCAACAATTAGGGGAATTTCGCT # Right flank : CCTCGTCACTGCTTCTAAAGGAAATGCACAGTTGTAGCGGTGTTGGAAAAATAAGTTCTTTGTCGTGATGATAGAACAGCAGCTCATAGCTTTGGCAGTTAGTAAAACATGTCTATCTTCACAGTGATTCCAAATATTCACCATTTGTCTGGATCGGTGAATGCCGAAAATCTATTTAAGTTGTTGGAGGGAGTAGTCAGCATGTTAACAAGGGAAGATATCTTTAAGCACGTCAAAGAAAAATTCCGTACATCGCCTGATTATCCATTTCAAAAATTTCCAACCTATGCTGCTTTGAGACATAAAGCGAATGGAAAATGGTATGGCCTTGTTATGAATGTTCATCCAGAAAAATTAGGGTTGGATGGAAATGACGAAATAGATATTCTGAATTTAAAATGTCAACCTGAAGTAAGTGGCAGTTTGAGAAATGGAAAGAGTATTTTACCTGGATACCATATGGATAAGGAAAATTGGATATCAATTGTTTTGGAACGTGT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 19362-19727 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBS01000135.1 Alkalihalobacillus clausii strain 7523-2 contig00135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 19362 32 100.0 36 ................................ CCTGACTTAGCCGCCAGTGCAAGGAACTTAGTGGCA 19430 32 100.0 36 ................................ GAATGTTCACTCTCATTAAACTCGCTAGCAGCAAGT 19498 32 100.0 34 ................................ CCCCCAGCTGGTTAGAACCGGCAAGGCAACTGTA 19564 32 100.0 34 ................................ CCTGACTTTTTAATCATGCCATATCCGGTAAAAA 19630 32 100.0 35 ................................ TCAACGTAGTCATGGAACTCTGCAAACGTCGTTGC 19697 31 78.1 0 .........C.T.......T...A...-..CC | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 96.4 35 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : GGAGTCTCGTTCACTTAGGAAAAGTGAGTTCATGGCTTTTATTAGTGATTGTTAGTTTCCTGATTGTAGCGACATTAAAACAAGTGAAAGGGAAGAGATCCACTGGTGTAGATGCTAGTCAATCTTTTATAAAAAAGCAGTGAGTGCTTTTTTATAATGAAGAAACAACCATTCTTACTGTTAGTATTAATGGAAAGAAACATAAAATGAATGAAGGACAATAGATCGAAAGGGGCGATATAAGAATAGAAGGGAACAACATCCACAGTTTGATCTTCTTAATCTTCCAAGAAAAAGAGGAGCAAAGAAGCAGCATTTTTAGTGCGAACCCCAAGCGCACATAAAATTACTAGACCACCCGCACCAAAAAAGAGCCTAACTATGGAAAAATATGTGCGGAAATGGTTAAATGTTGTATATGTCCCATGGTATGATAGAAAAAAGAGCAACTTTTTCCTATTATTGATTGTTTAGATTCCAATAAATAGGGGAATTTCGCT # Right flank : CAGCGCAATCAAAGGCGGCAACAAACTAGCGGTTTTCCGCATTGCCGCCTACGACAAGGAAAAGAAGAAACGGGTTTCTTCAAAGCAAAAAAAGCTTATTTATCAAAAATAAAGACAAACTCGAAGAATTATATGCCAGTCTCCAAAAAGGACAGCTAATCTCTGTCGAGCACAAAGAAAACAACGGATATACAAACATTTATGGTCTGATGGATCGCTCTTACGCAGACAGACGCAAGTCAGCGCAGAGAGGACAGGAAGCGGAAGCAAAAAGAGTGACTGGTCGTGCCAGTCACTCTTTTTTTGACCTATACTTCGAATAAATATTATAGACAAGCGCTCACAAATTCGCTATTTATCACAGTTTAATCCTTTGTGAACCGATCTTGTTCTTCAAACTCAAAAATGATTGATTTTACATTGTGTAGATTCTCTTCTGCAAATGTATCTTGATCATTCTTATCCTCTATATACACCATTGCATTGGTCTCTATTTGATA # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 22162-22392 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBS01000135.1 Alkalihalobacillus clausii strain 7523-2 contig00135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 22162 32 96.9 36 ..........A..................... CCGTAGCGAAGTGGGTTATATGTCAGATTTGCCGTA 22230 32 100.0 33 ................................ TGGTGTAAGGGTTAACTCTCCGCCCTCGTTTTG 22295 32 96.9 34 ............A................... TTCAGGGTCTTTAAGGCGTATTTTCACTTTATTC 22361 32 75.0 0 .......................CTCGTTCG. | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 92.2 35 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : GTCAAACGATAAACGGAACGGTTCAGGAAACATATTTGCTTCTCAATCGTAGCAACTAAGAAGACATAAAAGCGCTTTACATAAGCTCGGCAAGAATGGCCCTGGAAGAAGTAGAAACGGTTTTCAGGCACTCGCCTAGACAGCGTCTTAACAGCAAGGATCAGGCCCATTTCATACACATATCAAACAAGAATGGCGAAACAGATACACAACTCATAGGGGAGAAGGGATGTTAGTAGGCAACCGACTCCCCTCAATCGTTTCTTTGTGAGCAAGCGAAAAGTTCTGTATGATTGAAGAAGATCAAAAAACACTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAGCTTAAATATATAATATGTGTAATGATGGTAAAATGCTATACGTATGCCATGATAGAATAAAAGAAAAGAGCGGCTTTTTCCTATAATTGATTGTTTTCCAGCCAATAATTAGGGGGATTTCGCT # Right flank : TATGCAACCTAATAACCAGTAGGTTATCGACGTAAGGCATTTGGGAGGCGGATCTGCCATAAAACGAAAAACAGTAGTTTTAGGTATAAGTGGGTTTCTAGTAATTGGTATGGCTGTAAGTGCAGTCATCTTATTGAATGCGGACAAGGAATATGTGCCAGGGGGAACTCAATTAAAAAAGAATGAAAGAGACTCGATTGATTATTGGACCAAAGACAACATGAAAAAAGCTGTTCCAGGGGCAGGAATGGACGAATAAGCCTGCTCCTCGAACAGCTTTTGCTAACTAGTTGGTGTTTGGTTTCGTTCGTTATTTTTTTCTGAACTGGTGTTTAAAGCGGTTAAACGGGGTGAAGTATGAAACTGCGTAGTCTAAGTTAATGAGCTCGCTGTATTCAAAGACGCGCCCGTCGTTAAGAATGCCGCGATTGACAATTTTCATGGCTGCGATGCCTTTTTTGCAATTTAACAAATTGGCTTGTTCTCTTGTCACGTTGACG # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.89%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10054-10950 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBS01000081.1 Alkalihalobacillus clausii strain 7523-2 contig00081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================================================= ================== 10054 32 100.0 33 ................................ AACAAAGATAACCCTGTCCCGCTGCTAATCATG 10119 32 100.0 36 ................................ AATAACAAACGACTTGGCGGCTTTTTTGACTGAGGC 10187 32 100.0 34 ................................ GATGCTGATGAAGTCGCGCCTAGCCACCGTACAC 10253 32 100.0 33 ................................ GTTTCCGCAGCTACATATATAGTCAAGATAGTC 10318 32 100.0 34 ................................ CCCGAAGGTAAATAAAATTTACTATCCTAAAACA 10384 32 100.0 34 ................................ ATAACCGCGGTCCAAGTAGTCGTTATGTGCTTGG 10450 32 100.0 35 ................................ AATAGGCGGTTCCAAAGTTATAAAACCGACAAAAA 10517 32 100.0 36 ................................ CATCTTCTGAACAACCGTAATTAACGGAACCTCTAC 10585 32 100.0 33 ................................ CCAGCCTTGTTCGACCTCTACCTTTCCCTTTGT 10650 32 96.9 35 ...........A.................... TACCACTGCTTTTACGAAGTACTCGTTTAGCTCCT 10717 32 96.9 34 ..........A..................... CAGATGTCCATGTTGATTTGACCTGTCTGTAAAG 10783 31 78.1 105 ..........A..C......-.TC......TC TCTTTGACAGATGCTACCGATTCCGCGTCTAAAGGTCACACGTTGTGTAAGTAATAGAGTCAAATAAAAGTTTCTCTGGCCCACACTCTTTTTCATTGCAAAAAC 10919 31 78.1 0 ............T........AC..-...TCA | A [10929] ========== ====== ====== ====== ================================ ========================================================================================================= ================== 13 32 96.2 40 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ACAACTTGAATTAGAAACATCGGCGATTCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAGCTAAAACAATGTTCAACGGGCATTTCGATTGTTTGTAAAAACCGACCAACCGTAACAGGCGCTTTGCATGCATGGAAGAATTCAAACCATGATTAAATAGGACCAACTTTTGTGCCCGGGCCGCTTCTTTATAGGTTAACCGTTTCAAGAGACAATGTTTATGATTGGACCCCAAGGGAAGCGATCACCTCCTTTCAAGGAGAAACGAGGACAACGAACATTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAATGGCCTTAAATATGTGTTAATATGTACAAAAATGTAATAATGTGATCTTGTTCACTGTGCTATGATAGGAAATAGAGGCAAAATCAAACGTTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : ACTTCCACCTCTTGTTTGATTCCTTTCCTAACAGACCTATTTTCTTCTTGTAAAAGGTCTTTCCGATAAATGCTAGTCGGTTTGTTGTTGAAGGGTTTGCAACTTCAATTCGTGTAAGGAGAGTGTAAAATAGCGTAGCCATTAAAACGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCGTGCGGCCGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAAAATGATGGTTCCACCAGTCTTTGATCATATTATCAAAGATTGGATCGGTTTTATAGGATATCCTTCCAATAGAAGGTAGATCACCCATAT # Questionable array : NO Score: 8.55 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:-0.51, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 24639-25271 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPBS01000081.1 Alkalihalobacillus clausii strain 7523-2 contig00081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 24639 32 100.0 34 ................................ GGAATGTGGTTGACCTAATTTTGTTAAATGCTCT 24705 32 100.0 35 ................................ ATAATTGATCTTTGTTTTGTAACTTCCGACTTTAT 24772 32 100.0 34 ................................ TCATTTCCCCAGCAATGGTTAACTCGTCACCCTT 24838 32 100.0 36 ................................ GAGGATGGCGCGGGCGTAACGCGTATAGACGTAGGT 24906 32 100.0 34 ................................ AAATCCATATGCTTTTAGTTTTTGAATTGCTGAT 24972 32 100.0 35 ................................ AACGATGTCCATTAGGTCGTTTAACGAGCAATTAA 25039 32 96.9 35 ..........A..................... TCGAAAATGGCGGCGACTTGCGCCACTTGCAGAAG 25106 32 96.9 35 ..........A..................... GGTTATTTTGCATAGGTCGCCTCCACTGAGATTTT 25173 32 96.9 35 ...............G................ AACGATATAGCGAACATGCTGCAAATCATCTATGT 25240 32 81.2 0 ..........A...........C.CA.A..C. | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 97.2 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ATAAACAAATATATAGGAACAACATCAGATTCAGTACAAGAAGAAACGATTCTCTTATCTCCTCAGGCGATTGAGCATACGCCGTCATAAAAAATGCCCCCTTCCCATCTATATAATCAATGTTTAGGATGCCCTCATTAAAAAAGCAAGCGTTACCAACATCCTAACACATGGACAAATCGTGTGTCTCTTATTGTAAAAACGGCGGTGGTGTTAGATAGAACCCTTAGTATTACAGAATACAATACGGTGGAACGATCCTTAAAGGCAAACGATTCTCGATTTCTTCAATAAGCATTCGCCGATGCTCACTTTTCTCTAGTGCGAACCCTAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAACAGCCTCGAATATGAGTTTCTATGTACAAAAATGTAATAATGTGACCTTGTTGGGTGTGCTATGATAAGAATTAGAAGGGGAACCATTCGTTTTCGGTTGTATATTTCCGGAAAATGGGTGAAATTCGCT # Right flank : TAAGACAAGCCCCACCGCTTGCTGCAACAAGTCTTTCCCTGCTCAATTCGAGTGCAAAATACGTTTCTCTTACTAGACCAACAAGTGCATCACACCTATAAATACACGTATTAAAACACAAAACTAGAAAGTAAATTCCAATTAAGGGAGGAGTAAACAATGGAAGAGAAAGAAATGTTAGAGCTCTTGTTACAGAAGGTAACTGACCTGGAATTGGGGTTGAAAGAGCAAAAAGCGCATAATGCTGTAGTTGCAAAAGATTTAAAAGAACAAAAAGCGCATAATGCTGTAGTTGCAAAAGATTTAAAAGAACAAAAAGCGTATAATGCTGCGGTCGCAAAAGATTTAAAAGAGCAAAAAGCCCATAATGCAGCCTTCGCAAAAGACTTAAAAGAACAAAAAAATTATACTGCCGGAATCACAGAGGAACTAAAAGACCAAAAAGAGCACTACCTGGCCATGGTACAAGATATCAAGGAATTAAAAGAAGATCAGCTCAT # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //