Array 1 3488-1384 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNKT01000059.1 Allochromatium palmeri strain DSM 15591 NODE_59_length_17599_cov_35.3929, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3487 29 100.0 32 ............................. ATCGCTTGCTCGTTGCGCCCTTCGGCCACGAT 3426 29 100.0 32 ............................. CGCCGGATAGCTGTTGCTCCAAACGCAAGAGC 3365 29 100.0 33 ............................. CAGATAGTCCTGGAATTCTGCGTTCGCGCGGGT 3303 29 100.0 32 ............................. CGCGGCCAGTTGTTGGTTGGTGTCGGTCATTC 3242 29 100.0 32 ............................. CTCGCCGACAAGACGCGCGCGCTCGATATGCT 3181 29 100.0 32 ............................. CGCGGCCAGTTGTTGGTTGGTGTCGGTCATTC 3120 29 100.0 32 ............................. CTCGCCGACAAGACGCGCGCGCTCGATATGCT 3059 29 100.0 32 ............................. CGCGGCCAGTTGTTGGTTGGTGTCGGTCATTC 2998 29 100.0 32 ............................. CGAACGGCCCGCTCTACGGTCGGACCCCCGGC 2937 29 100.0 32 ............................. TCGAACCGCCGTGGAGGATTCGAGATGGGAAA 2876 29 100.0 32 ............................. TCGTGCAGTGTGTTGGCGCAGGCACTTCGGCG 2815 29 100.0 32 ............................. CGGTTCCTGGCTTGGGGTCGGCCGGTCCGATG 2754 29 100.0 32 ............................. ATTGGAGAACCGGAAGCCCAGGGCCAGGGTCG 2693 29 100.0 32 ............................. AATCACCAGAGGTTGAACTAGTGGAACTGGTC 2632 29 100.0 32 ............................. TTCGAGCGCAGTTGCTTCGCCCTGGAGACCGC 2571 29 100.0 32 ............................. CCGAGCATCGACAACGATGGCATCCAGAGAGA 2510 29 100.0 32 ............................. CCGGCGAGTGCGAAACCCCGGCAGTCGGGGCG 2449 29 100.0 32 ............................. TCTCACAGCGCATACATCCGCGCCGCCCGCGC 2388 29 100.0 32 ............................. ATGCCGACATCGGCACTACCGTCTGCTCCCAG 2327 29 100.0 32 ............................. TGACGACGCTGAAATGGGAGCAGGAACGCCAG 2266 29 100.0 32 ............................. CTCTATCAGGCCCGCACCGGCGGGTTCTCCAG 2205 29 100.0 32 ............................. CTGAGCGTCCATGGCGCGTCAATTTCTACGGC 2144 29 100.0 32 ............................. TCTGGGAGATCGGCCTGTTTCTTGAGGATGGC 2083 29 100.0 32 ............................. CTTTATTGCTCCGGTCAGCGCCAATTATAAAA 2022 29 96.6 32 ............................C GTGGAGGCGGCGATGTCGCCAGCTTGGGCGGC 1961 29 96.6 32 ............................C GACTCCCTGAGATGCGCGTGGGCGTGGGCCTC 1900 29 100.0 32 ............................. TCTGGGCCGCTGGGATCTCACACCTACATCAT 1839 29 100.0 32 ............................. CCGCTTGCAGATTTCTAGGCGGTTGTGCCCAT 1778 29 100.0 32 ............................. GCGACAGGAGTCCGGTAGCCACAGCGATCTCT 1717 29 100.0 32 ............................. ATCGTCTCGATCGAATCGCTTGCGGCTGCCGA 1656 29 100.0 32 ............................. ACTGCCCGGATCGCTAAAACCTCCCGAGACCA 1595 29 100.0 32 ............................. GTGGTGGGTCAACGCGACCTGAACGGTGGCGT 1534 29 100.0 32 ............................. CAGCGTCGACTGCTGTTCGTTGAGGATGGCGA 1473 29 100.0 32 ............................. GGCGCGCGCATCGTGTGGCCTGAAGACTACAT 1412 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.8 32 CCGTTCCCCGCGCTCGCGGGGATGAACCG # Left flank : AATCATTCCAATGATCGAGGAAGTTTTGTCCGCTGGTGAGGTTGAACCGCCCAAGCCGGCACCGGAGGCGGTTGCGCCGGCCATCGACGATGGGAAGCCTTTGGGCGATGCTGGTCATCGTCACTGAAAATGTCCCGCCGCGTCTGCGCGGACGGCTGGCGGTCTGGCTGCTGGAGATCCGCGCTGGTGTCTATATCGGCAGTCCGTCGAAGCGGCTACGCGAGTTCATCTGGAATCAGGTGCTGGAGGGTGTTGAGGATGGCAATGCAGTTATGGCTTGGAACACCAACACGGAGTCGGGCTACGATTTTCTCACCGTCGGTAAGAACCGGCGCGTCCCAGTCGATTTCGATGGTTTGCGATTGGTCAGTTTCAAGCCTCTCGATGAGCCGGATAAAGCTCTTTGACAATCAAAATTGCGCCCCTTTGAAAGAGGGTGTTTTGTTGGTAGACTTTTCAGCGTCTGATTTCTTTTTTTAAATCAGGCAAGTATGGGAAGT # Right flank : AATGTCGCGCTGGTGAGCCAGGCCGACGGTTGCGCAGCACCTTGGTCTTCCAGTCGTAGGCGTCCTGGGCGTGTTGGTTCTGGCAAAGCGAAAGGGACTTGTGACTACGATCCAGCCGATACTTTTATGCTAACGCTGACTAACAAGCGCCAACACATGCACACTCATTTCTGAGTGAGGGTGTATCTACCAAAGCACGCAGGAAGATCCCGCGTGCGCCATTGATGTCGCGGTCGACAGTCACGCCGCCGCTGGTGATCGTTTTCGCGCCGCCAATCGGCTGGATCTCGCCGGTCCAACTGGCCGTTTTGGAGGTGTAGGCTTCGTTGACGCGCAACACGACCTTGCCGATCCGCTTGGCCGCCGCCTCCAGGCGTTGACCGAAACGGAAGAAGGCATAGCCGAGCAGGGATCGCACCGACTTGGCGCGAATCCGGCGCTTGGAGCGCCGCGCCATCTCCTGAGTCTCGAAGGTCGGCAGTAGGATCAGGTCGAAGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCTCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 88-403 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNKT01000050.1 Allochromatium palmeri strain DSM 15591 NODE_50_length_26989_cov_33.5716, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 88 36 100.0 31 .................................... CTTCTAACCCTTTCTTACCATAGATAAGAAG 155 36 100.0 34 .................................... AGAGATCGCTGCCCGCTCCATGACCCTGGACACC 225 36 100.0 35 .................................... AAAAAAGCGAGGAGGGGGTCGATGGTGTGCTCGCG 296 36 100.0 34 .................................... TGTGATGACAGTGTTCAACCGTGACGCCGTATAT 366 35 91.7 0 .........................A..-......A | GGA [397] ========== ====== ====== ====== ==================================== =================================== ================== 5 36 98.3 34 GTTCGCATTGAGACCCGCTTTTGAGGGGATTAAGAC # Left flank : TCTACAAACTTCATATCGTAGGCATTTGCACCCGGGTTTTAGGGTCATAAACCCATGCATCCAACGCCCCCCGCCTTCTGTACTTCTG # Right flank : AAAAAGAATCGTTGTCATTAAGTTTGCTTTGTGTTTTGATAGAGGCTCTCTGAAAACCGTTAACAGAAAAGGCCATGTCGACACAAGAAGAACTCCAAGAACTGCTTGAGCAAAAAAGACTGCTGGATGAGAAGATTGAAAATGCACGCAAAGCGGCACGCGGACAGGCCATCGAGCAAGCGTTGAGTCTGATCACAACTTTCAATCTGACGCCGGAAGACTTGTTCGCCAGCACGAAGAAAGGGAAAGCCAAGTCAAAAGCCCCACCGAAGTATCGCGATCCCGAGACCGGCAAGACCTGGACGGGTAAGGGGCCGACTCCGGGTTGGCTCAAGGACAAGAACAGGGACGACTATCTGATCGTCCAAGACGCGGCCTAACGCATCTGGCTATCGGCTGAAAGGCGGGAAGTCTCGCCATCCTGATCGAACGCCCGCTTGCCTATGCCGCGCTCGGACTCGGTGCGGCTCTGGCGATTCATCAATGGAGCACGATCCAGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCATTGAGACCCGCTTTTGAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 1606-2173 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNKT01000063.1 Allochromatium palmeri strain DSM 15591 NODE_63_length_15253_cov_35.2239, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1606 28 100.0 32 ............................ GTATGGGCCTGGACGCGCACCGCGTGCTCGAT 1666 28 100.0 32 ............................ GGATGGGAGACTACCGGGCGGATCGCCAAGAA 1726 28 100.0 32 ............................ ACTTGCTGACGTTGTAGTGCGGGGTTCCAAGC 1786 28 100.0 32 ............................ GACGAGAAGAAGCGGCGCGAGCAGGCGGCGCT 1846 28 100.0 32 ............................ AGATGCGCTCGTTTTCCAGGAGCGACAAGGCC 1906 28 100.0 32 ............................ GTGTCCGACATCGAAATGAAAACCCGCGTCAC 1966 28 100.0 32 ............................ ATGCATAAGCCGCTGACTCGCTGGAGTGAGGG 2026 28 96.4 32 ...............A............ AATTGAAGGGCGTAGGTCGCGCGACTTGCGTG 2086 28 100.0 32 ............................ GCAAACGCTTCGAGCATTCGGACTACTCTCCG 2146 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTTCACTGCCGAGTAGGCAGCTCAGAAA # Left flank : GCTGACGATTTGCAGCAATTGATGGCATTGCCATGGCTCAGCGGCATGCATGACCACACGGCGGTTATCCGAACCGGCGTCAGTCCCCGCGCAGGCTGGTAATTGCATGGTTCGCCGTGTGCAGGCGAAAAGCAGTCCTGAACGGTTGCGTCGTCGTCTCATGCGTCGGCGAGGCCTCGGCGAGGAAGCCGCGCGCCAATGCATTCCGGACACTCTGGAAGCGCGTTTGGATCTGCCGTTCGTCACCATGAAAAGTCGAAGCACAGGGCAAAATTTCCGACTTTTCATCAATCAGCAAGCGGTTAGTCAGGCCATCGCAGGTGGGTTTAACCACTATGGCTTAAGCCTCACCGCAACCGTGCCCTGGTTTTGACCCTTTTTTTCACGGTTATGATTAGCGACTAAAAATCAGTCGGTTAGGATCGTCCAGAAAAATAGGCCGGGACGACCATTTACAAAAATATTCTTTGAAAATATAGACTTAAAGTGACGTGCTTCGA # Right flank : ATCATACAATCGAAGTTGTTGCGCCTTGCAAAGGCTTATCTGGCGGACTATACCAATTCAGTTTTTCGCGCAACTTGACGACCTCACCGACGATCAGCAGTGTAGGCGGTGACGGTGGGTTAGCCTCGACGATCTCTCGGATCGTAGCGAGCGTGCCCATGTAAACCCTTTGCAGATGGGTCGTACCCTGTTGAACAAGTGCAATCGGCATCTCAGATGATACGCCGTGTGCCATCAGTTGCTCGACGATGACGGGCAATCCCACTAGCCCCATATAAAACACGATAGTCTGATTTGGCTGCGCGAGCGCCGGCCAGTTCAGATCGATACTGCCATCCTTTAAATGTCCGGTCACAAAGGTTACGGATTGCGCATAGTCGCGGTGTGTCAATGGAATGCCCGCATACGCCGCGCAGCCGGATGCGGCCGTAATACCAGGAATAACCTGGAAAGGCACACCCTCAGCAGCAAGCGTGTCGATCTCCTCGCCACCACGTCCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 75-530 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNKT01000079.1 Allochromatium palmeri strain DSM 15591 NODE_79_length_7088_cov_35.4193, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 75 36 100.0 32 .................................... AAGAAGCGCGTGATTATGACGGCTCTGGGCGG 143 36 100.0 34 .................................... AAATGGAAGGATAAGCATTGGCGCGGTCGAGACC 213 36 100.0 34 .................................... AAGTCAATAACGATGCTTTCGACAGTATTCATTT 283 36 100.0 34 .................................... GCCGGATACAGCCGCCAAGCGGAATCATGTCAGG 353 36 100.0 35 .................................... ACGGCGGGGATCTGGGTATGCTGCTGGAGGTCGGG 424 36 100.0 35 .................................... TCGAGCTTGAGCATCTGAGCGGCGAGCTTAGCGGG 495 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 7 36 100.0 34 GTCCGCATTGAGACCCGCTTTCGAGGGGATTAAGAC # Left flank : CAGCTCCCCCCTTACCACCGCGCCTCTTGTGTCGATGTCACTTATACCTGTTCCATATACATAGTGTCTCTCGTG # Right flank : CGCCGATCAGAAACTCATCACTCCGCCAAGGACGGCGAGCACGTCACCGTCTTCCTGCCGCTCAAGCCCGAGCCAATCACCCTTCAGCACGCTTGAGTCGATCCCCAAAGCACACCCGAGGCGCAAAGAGACGCGACGGCGATCATTTCGCCGTCTGCGCACCCCTCACCGGGATTTCACTCCAGATGTCGTATCGTGATCCCGCCCCAGTGCGCCTGGAGATGCTCGGCGACCAGACGCCGGTGACAGTGACGTGGACTGGCCTCGCTGCACAGCAGGCAGGCTCCGTCGAACAGGGCGGGGTCGAGTGTGGTGCTGACCTGCCGCTCGGTGAGCAGTGCCTGGAACTGGCGTTCATAGACGTCCCAGTCGCCACCCTGCTTCTTGTAGTCATCGAGCAGGGCCGGCGTGGGGGCGAGTTCCGGCACCTCCTGATAGCCGATTCCGCCGAGGCGCTGGAGGAAGAAGCGCAGATCGTCGCGCTTGGCAAAGCCCGCCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCATTGAGACCCGCTTTCGAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 350-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNKT01000017.1 Allochromatium palmeri strain DSM 15591 NODE_17_length_74142_cov_37.468, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 349 36 100.0 34 .................................... TGATCGTCGACGAGGGCTGTCAAGTGACGCTCGA 279 36 100.0 32 .................................... GCCAGTGCTTTCCTCGTGAGTCCGGTTGCTGG 211 36 100.0 34 .................................... CAGTATTCACTCCATGGACCGTCGATCCAGTACT 141 36 100.0 34 .................................... AACTGGAACGTTAAGATGAGGGCGGGGCGCGTGG 71 36 88.9 0 ..............G.T....A.........T.... | ========== ====== ====== ====== ==================================== ================================== ================== 5 36 97.8 34 GTCCGCATTGAGACCCGCTTTCGAGGGGATTAAGAC # Left flank : GGGCGGCCATTGGTGCCACAACGGGGGCGGTCGGGTCGGCTGCCGCCGTTGTGGCAGGCACGACGGCCAGCGCCGCATCGGTGGCCACCACCGTGGGTGCCGTGGGTACGGCCACGGTCGTCACCAAGGCGTCCATCGATACGCTGCGCGCCGGTCAGACCGCGCTCGTGACCCGGCGTGCGCGCCGGACGTCCCTCGCCTAACCCGCCCTCAACGGTCGCTCGTATCGGGCGACCCCTCAAGCCGCTCATGGCCAGCCAATGCAGCCAGGGCGATGAATTCAGCCTGGAGTTCTGAAAGAGACGTCAGGATGTCAGCGTTAAAAGCACTTGATCCAAGCGCCAAGTTCGATACTATCGAGCTTGGCTGACAAGGCCACTCTGATCCCGAAATCTGTTGTATTTTTGGTCAAAACTTGACCTAACTTTTTTGCTGACTCTATGTGTATGCTAGAGCTTGTCTATCAAACTGATTTTTCAAGCAAAAGTTATCCACAGGGA # Right flank : CATGGCGAGCTTATCGATGGCGGAGTGGAGGGTGGG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCATTGAGACCCGCTTTCGAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //