Array 1 86384-86119 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEPD010000011.1 Dickeya dadantii strain Housui2-1 Nashi2-1_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================== ================== 86383 32 96.9 34 ............A................... ATCCAGTCCGGTTTTTGTATCTGCGGCTCGGGTT 86317 32 100.0 34 ................................ AGCTCCGTGAGGATGTCTCGATTGCTGACGAAAT 86251 32 87.5 66 .....................C.C.....T.T TTGATTCGCCGGTTAACGCGGCGATGGCGGGTCCGCTTCAAACAGCGGCAACGGCTTGCCGATGAT TACA [86227] 86149 31 59.4 0 ..A....-.GG......T...C...CAAGGCA | ========== ====== ====== ====== ================================ ================================================================== ================== 4 32 85.9 45 GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Left flank : GGCGCGTGGATTGAAACAACAGAGAAGCGCCGGGTTGCGCGCCCCAGGTC # Right flank : TCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACTACGTCCCAGTTCCACAGCCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACAAACCCCAGCACCGCCGCCGATCGCACGTTGGACTCCATCTGGTACAGGCTTAGCGCCAGAAAGGTAGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAGGCTGTTGGCGCCGACCGCGCCCAGTCCGCGGCTGGGCGATCGCTCGACCGCTTCGTGCCCTTCCGCGTACAGCTTGCCGAGCAGACCGGTGTCCTGCATCAGGATCGCCAACGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACGAAAATCAGCCCCCAGATCGCCATGTCGATGCCGCGCAACACGTCCAGCAGACGGCGCACCAGCAGCGCCACCGGCCGTAGCATCGGTTCGTGCATCACGTTGCGCGCCGCCAGGAACGACAACGGCAGCGCCAC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:3, 4:0.30, 5:-1.5, 6:0.25, 7:-0.89, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], //